Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003608.1

Orthogroup ID

OG0009388

Physical Location & Seq

Genomic Coordinates Reverse (-)

64619 .. 66017

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003608.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggacgtgacacccaagcccggagttccctgccgcgggatgaccgacacgtggctgaagaaacacgctttgatctacaccggagccacccgacacccttttatcctcgccattcgcgacggcaccgtcgacatctccgccttcaaacggtggctgagccaggactacatatttgtgagagcttttgtgccgtttgtggcgagcttggtggtgaaagcttggaggaagtctgatgatagtcatggtgatgtggaagtgatactgagtgggcttgctgctttgaacgatgagattgactggttcaagaaacaagcctccaaatggggtgttgatctctctgttgttgctcctcaaaagcctacccaggattactgcagatttctggagaatttgactagtcctgaggttgattacacagtgggcatgacggcctattgggccattgaagctgtgtaccaagagagctttgcccattgcctgggggagggctccaaaaccccaccggagctagaagaggtttgtcaaagatggggcaatgatggcttcggtaactactgttctgctctccgaagcattgctgaccggcgtttgttgaaggccacagatgatgaggtgagtaaagctgaagtgacattcctgtgtgttcttgaatatgaggttgagttctggaacatgagccgtgggattcctgggtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

TENA_THI-4

Protein Analysis

232

Amino Acids

26.21

Weight (kDa)

5.18

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16990
fragaria_vesca	FvH4_4g19550
malus_domestica	MD16G1155500.v1.1
prunus_persica	Prupe.1G119400_v2.0.a1
pyrus_communis	pycom16g13180
rosa_chinensis	RchiOBHm_Chr4g0424801
rosa_laevigata	RLG00000007421 RLG00000007423 RLG00000007426
rosa_multiflora	Rmu_sc0003608.1_g000020 Rmu_sc0007418.1_g000003 Rmu_sc0007418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00367020
rosa_rugosa	Rorug04G0199300
rosa_samantha	Rh4AG256900 Rh4BG262200 Rh4CG273200 Rh4DG257600 Rh4DG258000
rosa_wichuraiana	Rw4G022150 Rw4G022160 Rw4G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	36, 117
AciI	CCGC	3 cut(s)	34, 36, 138
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	2 cut(s)	77, 645
AcvI	CACGTG	1 cut(s)	51
AfaI	GTAC	2 cut(s)	455, 695
AfiI	CCNNNNNNNGG	8 cut(s)	20, 35, 36, 51, 147, 321, 478, 484
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	6 cut(s)	145, 283, 304, 446, 595, 650
AhlI	ACTAGT	1 cut(s)	395
AjiI	CACGTC	1 cut(s)	7
AjnI	CCWGG	4 cut(s)	159, 363, 477, 688
AluBI	AGCT	7 cut(s)	182, 204, 218, 449, 465, 508, 623
AluI	AGCT	7 cut(s)	182, 204, 218, 449, 465, 508, 623
AoxI	GGCC	3 cut(s)	429, 438, 597
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	388
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspS9I	GGNCC	1 cut(s)	438
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	3 cut(s)	223, 257, 625
AxyI	CCTNAGG	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	491
BbrPI	CACGTG	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	522, 533
BceAI	ACGGC	4 cut(s)	136, 175, 444, 663
BciT130I	CCWGG	4 cut(s)	161, 365, 479, 690
BcnI	CCSGG	1 cut(s)	21
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	3 cut(s)	396, 509, 697
BfmI	CTRYAG	1 cut(s)	373
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	2 cut(s)	34, 276
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	2 cut(s)	35, 277
Bme1390I	CCNGG	5 cut(s)	21, 161, 365, 479, 690
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	3 cut(s)	85, 124, 490
BmrFI	CCNGG	5 cut(s)	21, 161, 365, 479, 690
BpmI	CTGGAG	1 cut(s)	404
Bpu1102I	GCTNAGC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	51
BsaJI	CCNNGG	5 cut(s)	34, 363, 478, 679, 689
BsaWI	WCCGGW	2 cut(s)	80, 502
Bsc4I	CCNNNNNNNGG	8 cut(s)	20, 35, 36, 51, 147, 321, 478, 484
Bse118I	RCCGGY	1 cut(s)	582
Bse1I	ACTGG	1 cut(s)	302
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	3 cut(s)	472, 541, 573
BseBI	CCWGG	4 cut(s)	161, 365, 479, 690
BseDI	CCNNGG	5 cut(s)	34, 363, 478, 679, 689
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	8 cut(s)	20, 35, 36, 51, 147, 321, 478, 484
BseMI	GCAATG	3 cut(s)	472, 541, 573
BseMII	CTCAG	3 cut(s)	146, 254, 393
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	2 cut(s)	36, 117
BshFI	GGCC	3 cut(s)	431, 440, 599
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	4 cut(s)	21, 81, 503, 583
BslI	CCNNNNNNNGG	8 cut(s)	20, 35, 36, 51, 147, 321, 478, 484
BsnI	GGCC	3 cut(s)	431, 440, 599
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	72, 331
Bsp1720I	GCTNAGC	1 cut(s)	155
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	3 cut(s)	34, 36, 138
BspANI	GGCC	3 cut(s)	431, 440, 599
BspCNI	CTCAG	3 cut(s)	147, 255, 394
BspFNI	CGCG	2 cut(s)	36, 117
BspLI	GGNNCC	3 cut(s)	85, 124, 490
BspMAI	CTGCAG	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	3 cut(s)	472, 541, 573
BsrFI	RCCGGY	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	582
BssECI	CCNNGG	5 cut(s)	34, 363, 478, 679, 689
BssMI	GATC	2 cut(s)	72, 331
Bst2UI	CCWGG	4 cut(s)	161, 365, 479, 690
Bst4CI	ACNGT	4 cut(s)	127, 150, 418, 557
Bst6I	CTCTTC	1 cut(s)	507
BstBAI	YACGTR	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	202, 273
BstDEI	CTNAG	3 cut(s)	155, 263, 402
BstDSI	CCRYGG	2 cut(s)	34, 679
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	45
BstFNI	CGCG	2 cut(s)	36, 117
BstKTI	GATC	2 cut(s)	75, 334
BstMBI	GATC	2 cut(s)	72, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 446, 540
BstNI	CCWGG	4 cut(s)	161, 365, 479, 690
BstSCI	CCNGG	5 cut(s)	19, 159, 363, 477, 688
BstSFI	CTRYAG	1 cut(s)	373
BstUI	CGCG	2 cut(s)	36, 117
BstV1I	GCAGC	1 cut(s)	262
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	431, 440, 599
BtgI	CCRYGG	2 cut(s)	34, 679
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	423
BtuMI	TCGCGA	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	202, 273
Cfr10I	RCCGGY	1 cut(s)	582
Cfr13I	GGNCC	1 cut(s)	438
Cfr42I	CCGCGG	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	454, 694
CviAII	CATG	3 cut(s)	242, 424, 673
CviQI	GTAC	2 cut(s)	454, 694
DdeI	CTNAG	3 cut(s)	155, 263, 402
DpnI	GATC	2 cut(s)	74, 333
DpnII	GATC	2 cut(s)	72, 331
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
EciI	GGCGGA	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	491
Eco57I	CTGAAG	2 cut(s)	77, 645
Eco72I	CACGTG	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	402
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoRII	CCWGG	4 cut(s)	159, 363, 477, 688
EcoT38I	GRGCYC	1 cut(s)	491
FaeI	CATG	3 cut(s)	245, 427, 676
FaiI	YATR	5 cut(s)	170, 243, 425, 654, 674
FatI	CATG	3 cut(s)	241, 423, 672
FauI	CCCGC	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	34, 276
FokI	GGATG	1 cut(s)	52
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	2 cut(s)	34, 276
FspBI	CTAG	3 cut(s)	396, 509, 697
GluI	GCNGC	2 cut(s)	34, 276
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	3 cut(s)	431, 440, 599
HapII	CCGG	4 cut(s)	21, 81, 503, 583
Hin1II	CATG	3 cut(s)	245, 427, 676
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	1 cut(s)	685
HpaII	CCGG	4 cut(s)	21, 81, 503, 583
HphI	GGTGA	3 cut(s)	223, 257, 625
Hpy166II	GTNNAC	2 cut(s)	130, 454
Hpy188I	TCNGA	2 cut(s)	232, 569
Hpy188III	TCNNGA	6 cut(s)	116, 304, 383, 401, 647, 667
Hpy8I	GTNNAC	2 cut(s)	130, 454
Hpy99I	CGWCG	2 cut(s)	122, 131
HpyAV	CCTTC	2 cut(s)	151, 589
HpyCH4III	ACNGT	4 cut(s)	127, 150, 418, 557
HpyCH4IV	ACGT	2 cut(s)	6, 50
HpyCH4V	TGCA	1 cut(s)	375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 446, 540
HpyF3I	CTNAG	3 cut(s)	155, 263, 402
HpySE526I	ACGT	2 cut(s)	6, 50
Hsp92II	CATG	3 cut(s)	245, 427, 676
KspI	CCGCGG	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	72, 331
LmnI	GCTCC	4 cut(s)	83, 352, 494, 505
Lsp1109I	GCAGC	1 cut(s)	262
MaeI	CTAG	3 cut(s)	396, 509, 697
MaeII	ACGT	2 cut(s)	6, 50
MaeIII	GTNAC	3 cut(s)	7, 548, 628
MalI	GATC	2 cut(s)	74, 333
MboI	GATC	2 cut(s)	72, 331
MboII	GAAGA	2 cut(s)	70, 524
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	1 cut(s)	388
MnlI	CCTC	9 cut(s)	116, 216, 325, 360, 397, 478, 508, 604, 649
MslI	CAYNNNNRTG	3 cut(s)	173, 246, 637
MspA1I	CMGCKG	1 cut(s)	36
MspI	CCGG	4 cut(s)	21, 81, 503, 583
MspR9I	CCNGG	5 cut(s)	21, 161, 365, 479, 690
MvaI	CCWGG	4 cut(s)	161, 365, 479, 690
MvnI	CGCG	2 cut(s)	36, 117
MwoI	GCNNNNNNNGC	3 cut(s)	437, 446, 540
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	72, 331
NlaIII	CATG	3 cut(s)	245, 427, 676
NlaIV	GGNNCC	3 cut(s)	85, 124, 490
NmuCI	GTSAC	2 cut(s)	7, 628
NruI	TCGCGA	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 126
PfeI	GAWTC	1 cut(s)	685
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	35, 277
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	51
Psp6I	CCWGG	4 cut(s)	159, 363, 477, 688
PspCI	CACGTG	1 cut(s)	51
PspGI	CCWGG	4 cut(s)	159, 363, 477, 688
PspN4I	GGNNCC	3 cut(s)	85, 124, 490
PspPI	GGNCC	1 cut(s)	438
PsrI	GAACNNNNNNTAC	2 cut(s)	541, 573
PstI	CTGCAG	1 cut(s)	377
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	2 cut(s)	455, 695
RsaNI	GTAC	2 cut(s)	454, 694
RseI	CAYNNNNRTG	3 cut(s)	173, 246, 637
SacII	CCGCGG	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	128
SatI	GCNGC	2 cut(s)	34, 276
Sau3AI	GATC	2 cut(s)	72, 331
Sau96I	GGNCC	1 cut(s)	438
ScrFI	CCNGG	5 cut(s)	21, 161, 365, 479, 690
SduI	GDGCHC	1 cut(s)	491
SfcI	CTRYAG	1 cut(s)	373
SfiI	GGCCNNNNNGGCC	1 cut(s)	437
Sfr303I	CCGCGG	1 cut(s)	37
SgrBI	CCGCGG	1 cut(s)	37
SmiMI	CAYNNNNRTG	3 cut(s)	173, 246, 637
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	1 cut(s)	388
SsiI	CCGC	3 cut(s)	34, 36, 138
SspMI	CTAG	3 cut(s)	396, 509, 697
StyD4I	CCNGG	5 cut(s)	19, 159, 363, 477, 688
TaaI	ACNGT	4 cut(s)	127, 150, 418, 557
TaiI	ACGT	2 cut(s)	9, 53
TaqI	TCGA	1 cut(s)	129
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	388
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	685
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	2 cut(s)	7, 628
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	2 cut(s)	7, 628
TspRI	CASTG	1 cut(s)	423
Van91I	CCANNNNNTGG	1 cut(s)	478
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	3 cut(s)	396, 509, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.