Rw4G022150

seed maturation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009388
Physical Location & Seq
Reverse (-)
47390498 .. 47391859
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022150.1

Sequence Viewer

Length: 660 bp
ATGACCGACACGTGGCTGAAGAAACACACTTTGATCTACACCGTAGCCACCCGACACCCTTTTATCCTCGCCATTCGCGACGGCACCGACGGCATCTCCGCCTTCAAACGGTGGCTGAGGCAGGACTACATATTTGTGAGAGATTTTGTGCCGTTTGTGGCGAGTTTGGTGGTGAAAGCTTGGAAGAAGTCTGATGATAGTCATGGTGATGTGGAAGTGATACTGAGTGGGCTTGCTGCTTTGAACGATGAGATTGACTGGTTCAAGAAACAAGCCTCCAAATGGGGTGTTGATCTCTCTGTTGTTGCTCCTCAAAAGCCTACCCAGGATTACTGCAGATTTCTGGAGAATTTGACTAGTCCTGAGGTTGATTACACAGTGGGCATGACGGCCTATTGGGCCATTGAAGCTGTGTACCAAGGGAGCTTTGCCCATTGCCTGGGGGAGGGCTCCAAAACCCCACCGGAACTAGAAGAGGTATGTCAAAGATGGGGCAATGATGGCTTCGGTAACTACCGTTCTGCTCTCCGAAGCATTGCTGACCTGCGTTTGTTGAAGGCCACAGATGATGAGGTGAGTAAAGCTGAAGTGACATTCCTGCGTGTTCTTGAATATGAGGTTGAGTTCTGGAACATGAGCAGTGGGATTCCTGGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00730 ko01100 map00730 map01100
Pfam Domains
Protein Families
TENA_THI-4

Protein Analysis

219

Amino Acids

24.9

Weight (kDa)

5.16

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TENA_THI-4 PF03070 7 - 214 9.8e-36 TENA/THI-4/PQQC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 552
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 439
AccII CGCG 1 cut(s) 78
AciI CCGC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 2 cut(s) 38, 606
AcvI CACGTG 1 cut(s) 12
AfaI GTAC 2 cut(s) 416, 656
AfiI CCNNNNNNNGG 5 cut(s) 12, 108, 282, 439, 445
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 6 cut(s) 106, 244, 265, 407, 556, 611
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 3 cut(s) 324, 438, 649
AluBI AGCT 4 cut(s) 179, 410, 426, 584
AluI AGCT 4 cut(s) 179, 410, 426, 584
AoxI GGCC 3 cut(s) 390, 399, 558
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 349
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspS9I GGNCC 1 cut(s) 399
AsuHPI GGTGA 3 cut(s) 184, 218, 586
AxyI CCTNAGG 1 cut(s) 363
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 452
BbrPI CACGTG 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 223
BccI CCATC 2 cut(s) 483, 494
BceAI ACGGC 4 cut(s) 97, 106, 136, 405
BciT130I CCWGG 3 cut(s) 326, 440, 651
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 3 cut(s) 357, 470, 658
BfmI CTRYAG 1 cut(s) 334
BfuAI ACCTGC 1 cut(s) 552
BglI GCCNNNNNGGC 1 cut(s) 398
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 3 cut(s) 326, 440, 651
BmgT120I GGNCC 1 cut(s) 399
BmiI GGNNCC 2 cut(s) 85, 451
BmrFI CCNGG 3 cut(s) 326, 440, 651
BmsI GCATC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 12
BsaJI CCNNGG 4 cut(s) 324, 418, 439, 650
BsaWI WCCGGW 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 5 cut(s) 12, 108, 282, 439, 445
Bse1I ACTGG 1 cut(s) 263
Bse21I CCTNAGG 1 cut(s) 363
Bse3DI GCAATG 3 cut(s) 433, 502, 534
BseBI CCWGG 3 cut(s) 326, 440, 651
BseDI CCNNGG 4 cut(s) 324, 418, 439, 650
BseLI CCNNNNNNNGG 5 cut(s) 12, 108, 282, 439, 445
BseMI GCAATG 3 cut(s) 433, 502, 534
BseMII CTCAG 3 cut(s) 107, 215, 354
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 3 cut(s) 392, 401, 560
BshNI GGYRCC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 464
BslI CCNNNNNNNGG 5 cut(s) 12, 108, 282, 439, 445
BsnI GGCC 3 cut(s) 392, 401, 560
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 2 cut(s) 33, 292
Bsp68I TCGCGA 1 cut(s) 78
BspACI CCGC 1 cut(s) 99
BspANI GGCC 3 cut(s) 392, 401, 560
BspCNI CTCAG 3 cut(s) 108, 216, 355
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 85, 451
BspMAI CTGCAG 1 cut(s) 338
BspMI ACCTGC 1 cut(s) 552
BspT107I GGYRCC 1 cut(s) 83
BsrDI GCAATG 3 cut(s) 433, 502, 534
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 324, 418, 439, 650
BssMI GATC 2 cut(s) 33, 292
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 3 cut(s) 326, 440, 651
Bst4CI ACNGT 4 cut(s) 43, 111, 379, 518
Bst6I CTCTTC 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 3 cut(s) 116, 224, 363
BstENI CCTNNNNNAGG 1 cut(s) 443
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 2 cut(s) 36, 295
BstMBI GATC 2 cut(s) 33, 292
BstMWI GCNNNNNNNGC 4 cut(s) 90, 398, 407, 501
BstNI CCWGG 3 cut(s) 326, 440, 651
BstSCI CCNGG 3 cut(s) 324, 438, 649
BstSFI CTRYAG 1 cut(s) 334
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 223
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 3 cut(s) 392, 401, 560
BtsI GCAGTG 1 cut(s) 646
BtsIMutI CAGTG 2 cut(s) 384, 646
BtuMI TCGCGA 1 cut(s) 78
BveI ACCTGC 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 399
Csp6I GTAC 2 cut(s) 415, 655
CviAII CATG 3 cut(s) 203, 385, 634
CviQI GTAC 2 cut(s) 415, 655
DdeI CTNAG 3 cut(s) 116, 224, 363
DpnI GATC 2 cut(s) 35, 294
DpnII GATC 2 cut(s) 33, 292
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
EciI GGCGGA 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 38, 606
Eco72I CACGTG 1 cut(s) 12
Eco81I CCTNAGG 1 cut(s) 363
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoRII CCWGG 3 cut(s) 324, 438, 649
EcoT14I CCWWGG 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 3 cut(s) 206, 388, 637
FaiI YATR 6 cut(s) 131, 204, 386, 481, 615, 635
FatI CATG 3 cut(s) 202, 384, 633
Fnu4HI GCNGC 1 cut(s) 237
FriOI GRGCYC 1 cut(s) 452
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 3 cut(s) 357, 470, 658
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 3 cut(s) 392, 401, 560
HapII CCGG 1 cut(s) 464
Hin1II CATG 3 cut(s) 206, 388, 637
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 1 cut(s) 646
HpaII CCGG 1 cut(s) 464
HphI GGTGA 3 cut(s) 184, 218, 586
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 2 cut(s) 193, 530
Hpy188III TCNNGA 6 cut(s) 77, 265, 344, 362, 608, 628
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 2 cut(s) 83, 92
HpyAV CCTTC 2 cut(s) 112, 550
HpyCH4III ACNGT 4 cut(s) 43, 111, 379, 518
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 398, 407, 501
HpyF3I CTNAG 3 cut(s) 116, 224, 363
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 3 cut(s) 206, 388, 637
Kzo9I GATC 2 cut(s) 33, 292
LmnI GCTCC 3 cut(s) 313, 423, 455
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 102
MaeI CTAG 3 cut(s) 357, 470, 658
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 2 cut(s) 509, 589
MalI GATC 2 cut(s) 35, 294
MboI GATC 2 cut(s) 33, 292
MboII GAAGA 3 cut(s) 31, 196, 485
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 1 cut(s) 349
MnlI CCTC 9 cut(s) 77, 111, 286, 321, 358, 439, 469, 565, 610
MslI CAYNNNNRTG 2 cut(s) 134, 207
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 3 cut(s) 326, 440, 651
MvaI CCWGG 3 cut(s) 326, 440, 651
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 4 cut(s) 90, 398, 407, 501
NdeII GATC 2 cut(s) 33, 292
NlaIII CATG 3 cut(s) 206, 388, 637
NlaIV GGNNCC 2 cut(s) 85, 451
NmuCI GTSAC 1 cut(s) 589
NruI TCGCGA 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 646
PflMI CCANNNNNTGG 1 cut(s) 439
PkrI GCNGC 1 cut(s) 238
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 12
Psp6I CCWGG 3 cut(s) 324, 438, 649
PspCI CACGTG 1 cut(s) 12
PspGI CCWGG 3 cut(s) 324, 438, 649
PspN4I GGNNCC 2 cut(s) 85, 451
PspPI GGNCC 1 cut(s) 399
PsrI GAACNNNNNNTAC 2 cut(s) 502, 534
PstI CTGCAG 1 cut(s) 338
RruI TCGCGA 1 cut(s) 78
RsaI GTAC 2 cut(s) 416, 656
RsaNI GTAC 2 cut(s) 415, 655
RseI CAYNNNNRTG 2 cut(s) 134, 207
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 33, 292
Sau96I GGNCC 1 cut(s) 399
ScrFI CCNGG 3 cut(s) 326, 440, 651
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 334
SfiI GGCCNNNNNGGCC 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 134, 207
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 1 cut(s) 349
SsiI CCGC 1 cut(s) 99
SspMI CTAG 3 cut(s) 357, 470, 658
StyD4I CCNGG 3 cut(s) 324, 438, 649
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 4 cut(s) 43, 111, 379, 518
TaiI ACGT 1 cut(s) 14
TaqII GACCGA 1 cut(s) 20
TasI AATT 1 cut(s) 349
TfiI GAWTC 1 cut(s) 646
TscAI CASTG 2 cut(s) 384, 646
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 589
TspRI CASTG 2 cut(s) 384, 646
Van91I CCANNNNNTGG 1 cut(s) 439
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 1 cut(s) 349
XspI CTAG 3 cut(s) 357, 470, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.