Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009388

Physical Location & Seq

Genomic Coordinates Forward (+)

9333262 .. 9334675

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G119400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATGGGAAGTCGAAGCCTGGGTTGCCGCACGGTGGGATGACCGACACGTGGGTGAAGAAGCACCGTCTGATCTACATTGGAGCCACCCGACACCCTTTTATCCTCAGCATTCGTGACGGCACCGTCGATCTTCCAGCCTTCAAACGATGGCTGGGGCAAGACTACATATTTGTTAGGGCGTTTGTGCCTTTCGTAGCGAGTGTGCTGATAAGGGCTTATAAGAAAGGTGATGAGAGTAGTGGTGATATGGAAGTGATATTGAGTGGTTTGGGTTCTCTGAATGATGAGATTGCATGGTTCAAGCAAGAGGCTTCCAAATGGGGTGTTGACCTCTCTCAAGTTGCCCCTGAAAAACCAACCCAACATTACTGCAGATTTCTAGAGGAATTAATGAGGCCAGAGGTTGATTATACTGTGGCCATGGCAGCCTTTTGGGCCATTGAAGCTGTGTACCAAGAGAGCTTTGCCCATTGTCTGGAAGAGGGGTCCAAAGCCCCACCAGAGCTAAAAGAGGCTTGTCAGAGATGGGGCAATGATGGGTTTGGTCACTACTGCTCTTCTCTCCGAAACATAGCTGACCGTCTGTTGGAGAAGGCGGCTTCAGGCAGCGTGCCTCTGGTGAAGGTTTCAGAAGATGTGGTGAGCAAAGCTGAAGTAACATTCCTGCGTGTGCTTGAATATGAGGTTGATTTCTGGAACATGAGCTGTGGAACAGCTGGACACTCTGCTCCAAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

TENA_THI-4

Protein Analysis

248

Amino Acids

27.62

Weight (kDa)

5.83

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16990
fragaria_vesca	FvH4_4g19550
malus_domestica	MD16G1155500.v1.1
prunus_persica	Prupe.1G119400_v2.0.a1
pyrus_communis	pycom16g13180
rosa_chinensis	RchiOBHm_Chr4g0424801
rosa_laevigata	RLG00000007421 RLG00000007423 RLG00000007426
rosa_multiflora	Rmu_sc0003608.1_g000020 Rmu_sc0007418.1_g000003 Rmu_sc0007418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00367020
rosa_rugosa	Rorug04G0199300
rosa_samantha	Rh4AG256900 Rh4BG262200 Rh4CG273200 Rh4DG257600 Rh4DG258000
rosa_wichuraiana	Rw4G022150 Rw4G022160 Rw4G024020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AasI	GACNNNNNNGTC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	478
AciI	CCGC	2 cut(s)	29, 599
AcoI	YGGCCR	1 cut(s)	420
AcuI	CTGAAG	2 cut(s)	588, 675
AcvI	CACGTG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	4 cut(s)	35, 51, 478, 589
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	4 cut(s)	145, 304, 446, 680
AjnI	CCWGG	1 cut(s)	19
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	7 cut(s)	449, 465, 508, 578, 653, 708, 719
AluI	AGCT	7 cut(s)	449, 465, 508, 578, 653, 708, 719
AoxI	GGCC	3 cut(s)	398, 420, 438
ApeKI	GCWGC	2 cut(s)	428, 609
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AseI	ATTAAT	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	438, 489
AsuHPI	GGTGA	5 cut(s)	67, 242, 257, 634, 655
AvaII	GGWCC	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	122
BbrPI	CACGTG	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	440, 621
BccI	CCATC	3 cut(s)	144, 522, 533
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	21
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	373
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	4 cut(s)	29, 429, 600, 610
BlsI	GCNGC	4 cut(s)	30, 430, 601, 611
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	438, 489
BmiI	GGNNCC	3 cut(s)	85, 124, 490
BmrFI	CCNGG	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	20, 423
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 51, 478, 589
Bse3DI	GCAATG	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	20, 423
BseGI	GGATG	2 cut(s)	10, 45
BseLI	CCNNNNNNNGG	4 cut(s)	35, 51, 478, 589
BseMI	GCAATG	1 cut(s)	541
BseMII	CTCAG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	440, 621
BseYI	CCCAGC	1 cut(s)	154
BshFI	GGCC	3 cut(s)	400, 422, 440
BshNI	GGYRCC	1 cut(s)	122
BslI	CCNNNNNNNGG	4 cut(s)	35, 51, 478, 589
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	3 cut(s)	400, 422, 440
Bsp143I	GATC	2 cut(s)	72, 130
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	2 cut(s)	29, 599
BspANI	GGCC	3 cut(s)	400, 422, 440
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	85, 124, 490
BspMAI	CTGCAG	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	565
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	541
BssECI	CCNNGG	2 cut(s)	20, 423
BssMI	GATC	2 cut(s)	72, 130
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	5 cut(s)	35, 68, 127, 418, 584
Bst6I	CTCTTC	2 cut(s)	477, 565
BstBAI	YACGTR	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	614
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	10, 45
BstKTI	GATC	2 cut(s)	75, 133
BstMBI	GATC	2 cut(s)	72, 130
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 428, 437, 446
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	440, 621
BsuRI	GGCC	3 cut(s)	400, 422, 440
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	10, 45
Cac8I	GCNNGC	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	438, 489
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	3 cut(s)	297, 424, 703
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	2 cut(s)	74, 132
DpnII	GATC	2 cut(s)	72, 130
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	2 cut(s)	477, 565
EarI	CTCTTC	2 cut(s)	477, 565
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	489
Eco57I	CTGAAG	2 cut(s)	588, 675
Eco72I	CACGTG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	3 cut(s)	300, 427, 706
FaiI	YATR	9 cut(s)	170, 222, 251, 298, 414, 425, 575, 684, 704
FatI	CATG	3 cut(s)	296, 423, 702
Fnu4HI	GCNGC	4 cut(s)	29, 429, 600, 610
FokI	GGATG	2 cut(s)	17, 52
Fsp4HI	GCNGC	4 cut(s)	29, 429, 600, 610
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	4 cut(s)	29, 429, 600, 610
GsaI	CCCAGC	1 cut(s)	158
HaeIII	GGCC	3 cut(s)	400, 422, 440
Hin1II	CATG	3 cut(s)	300, 427, 706
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HphI	GGTGA	5 cut(s)	67, 242, 257, 634, 655
Hpy166II	GTNNAC	2 cut(s)	331, 454
Hpy188I	TCNGA	5 cut(s)	72, 282, 525, 569, 634
Hpy188III	TCNNGA	4 cut(s)	116, 383, 479, 697
Hpy8I	GTNNAC	2 cut(s)	331, 454
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	151, 589, 619
HpyCH4III	ACNGT	5 cut(s)	35, 68, 127, 418, 584
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	296, 375
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 428, 437, 446
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	300, 427, 706
Kzo9I	GATC	2 cut(s)	72, 130
LguI	GCTCTTC	1 cut(s)	565
LmnI	GCTCC	2 cut(s)	83, 736
Lsp1109I	GCAGC	2 cut(s)	440, 621
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	3 cut(s)	116, 548, 658
MalI	GATC	2 cut(s)	74, 132
MboI	GATC	2 cut(s)	72, 130
MboII	GAAGA	5 cut(s)	70, 125, 494, 552, 647
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	1 cut(s)	389
MluNI	TGGCCA	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	570
Mox20I	TGGCCA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	719
MspR9I	CCNGG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	4 cut(s)	25, 428, 437, 446
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	2 cut(s)	72, 130
NlaIII	CATG	3 cut(s)	300, 427, 706
NlaIV	GGNNCC	3 cut(s)	85, 124, 490
NmuCI	GTSAC	2 cut(s)	116, 548
OliI	CACNNNNGTG	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	1 cut(s)	111
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	4 cut(s)	30, 430, 601, 611
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	51
PshBI	ATTAAT	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	19
PspCI	CACGTG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	3 cut(s)	85, 124, 490
PspPI	GGNCC	2 cut(s)	438, 489
PstI	CTGCAG	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	565
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	4 cut(s)	29, 429, 600, 610
Sau3AI	GATC	2 cut(s)	72, 130
Sau96I	GGNCC	2 cut(s)	438, 489
ScrFI	CCNGG	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	389
SsiI	CCGC	2 cut(s)	29, 599
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	5 cut(s)	35, 68, 127, 418, 584
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	2 cut(s)	14, 129
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	389
TauI	GCSGC	2 cut(s)	31, 602
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TseFI	GTSAC	2 cut(s)	116, 548
TseI	GCWGC	2 cut(s)	428, 609
Tsp45I	GTSAC	2 cut(s)	116, 548
Van91I	CCANNNNNTGG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	489
VspI	ATTAAT	1 cut(s)	392
XbaI	TCTAGA	1 cut(s)	382
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.