Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006370

Physical Location & Seq

Genomic Coordinates Reverse (-)

5949006 .. 5949644

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTTTAAGGTCATGCGGGAGAGTAACATGGATATGGATACAGCTGGTTATAACATCATCATCCATGGACTGTGCAAGGCTGGTAAGTTTGACGAAGCAGGGAATATATTCACTAATCTCCTCATCAGTGGATTGCAACCTGATGTTCAAACTTACAATATGATGATCAGATTCAGCTCGTTAGGTAGGGCTGAAAAATTATATGCAGAGATGATCCGTAGAGGTCTAGTCCCCGATACTATAACCTATAACTCAATGATCCATGGACTCTGCAAGCAGAACAAACTAGCTCAGGCGAGAAAGGTATCCAAGAGCTGCTCAACGTTTAATACACTCATTAATGGTTACTGTAAAGCAACAAGGGTTAAAGATGGGATGAATCTTTTCTGCGAGATGTATCGAAGAGGAATAGTTGCTAATGTAATTACTTACACCACTTTGATTCATGGGTTTCGTCAAGTTGGTGATTTTAATACCGCCTTAGACATTTTCCAGGAGATGGTTTCTAATGGTGTGTATTCTAGTTCGATAACGTTCCGTGATATTTTGCCACAGTTATGCAGTAGGAAGGAACTAAGAAAGGCAGTGGCAATGCTACTGCAGAAGAGTAGCATGGTATCAAACAATGTAACCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

212

Amino Acids

23.9

Weight (kDa)

9.44

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	11 - 33	4.1e-07	PPR repeat
PPR_2	PF13041	13 - 57	6.7e-13	PPR repeat family
PPR_2	PF13041	63 - 92	9.6e-10	PPR repeat family
PPR_1	PF12854	74 - 102	1.8e-10	PPR repeat
PPR_long	PF17177	102 - 198	7.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	106 - 132	3.3e-09	PPR repeat
PPR_2	PF13041	107 - 151	6.4e-16	PPR repeat family
PPR	PF01535	107 - 137	7.8e-08	PPR repeat
PPR_3	PF13812	128 - 183	9.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	135 - 168	4.4e-08	PPR repeat
PPR_2	PF13041	140 - 187	6.2e-10	PPR repeat family
PPR	PF01535	142 - 172	2.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17370
fragaria_vesca	FvH4_6g24130 FvH4_6g24130 FvH4_6g24130 FvH4_6g24130 FvH4_6g24130
malus_domestica	MD17G1234700.v1.1
prunus_persica	Prupe.3G134300_v2.0.a1
pyrus_communis	pycom17g23790 pycom17g23800
rosa_chinensis	RchiOBHm_Chr3g0483111 RchiOBHm_Chr3g0483141
rosa_laevigata	RLG00000023302
rosa_multiflora	Rmu_co8094512.1_g000001 Rmu_sc0000441.1_g000051 Rmu_sc0000977.1_g000020 Rmu_sc0003226.1_g000094
rosa_roxburghii	Rroxscaffold_6G00398650
rosa_rugosa	Rorug03G0204600
rosa_samantha	Rh3AG252100 Rh3AG252800 Rh3BG289100 Rh3BG289300 Rh3CG286300 Rh3DG282200
rosa_wichuraiana	Rw3G022820 Rw3G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	51
AccB7I	CCANNNNNTGG	1 cut(s)	499
AciI	CCGC	2 cut(s)	16, 477
AclI	AACGTT	2 cut(s)	323, 533
AclWI	GGATC	2 cut(s)	208, 253
AfiI	CCNNNNNNNGG	1 cut(s)	499
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	4 cut(s)	44, 177, 290, 315
AluI	AGCT	4 cut(s)	44, 177, 290, 315
AlwI	GGATC	2 cut(s)	208, 253
ApeKI	GCWGC	1 cut(s)	315
AseI	ATTAAT	1 cut(s)	339
Asp700I	GAANNNNTTC	2 cut(s)	107, 383
AsuHPI	GGTGA	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	365, 493
BciT130I	CCWGG	1 cut(s)	494
BciVI	GTATCC	2 cut(s)	31, 316
BclI	TGATCA	1 cut(s)	165
BfaI	CTAG	3 cut(s)	227, 287, 522
BfmI	CTRYAG	1 cut(s)	599
BfuI	GTATCC	2 cut(s)	31, 316
BisI	GCNGC	1 cut(s)	316
BlsI	GCNGC	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	64, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	64, 262
BseGI	GGATG	2 cut(s)	60, 381
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	215
Bsp143I	GATC	3 cut(s)	165, 213, 258
Bsp19I	CCATGG	2 cut(s)	64, 262
BspACI	CCGC	2 cut(s)	16, 477
BspCNI	CTCAG	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	2 cut(s)	208, 253
BsrDI	GCAATG	1 cut(s)	597
BssECI	CCNNGG	2 cut(s)	64, 262
BssMI	GATC	3 cut(s)	165, 213, 258
BssT1I	CCWWGG	2 cut(s)	64, 262
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	3 cut(s)	72, 350, 555
Bst6I	CTCTTC	2 cut(s)	397, 599
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	3 cut(s)	291, 481, 575
BstDSI	CCRYGG	2 cut(s)	64, 262
BstF5I	GGATG	2 cut(s)	60, 381
BstKTI	GATC	3 cut(s)	168, 216, 261
BstMBI	GATC	3 cut(s)	165, 213, 258
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	302
BsuI	GTATCC	2 cut(s)	31, 316
BtgI	CCRYGG	2 cut(s)	64, 262
BtsCI	GGATG	2 cut(s)	60, 381
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	133, 591
Cac8I	GCNNGC	1 cut(s)	275
CviAII	CATG	6 cut(s)	13, 28, 65, 263, 446, 613
CviJI	RGCY	6 cut(s)	44, 80, 177, 191, 290, 315
CviKI_1	RGCY	6 cut(s)	44, 80, 177, 191, 290, 315
DdeI	CTNAG	3 cut(s)	291, 481, 575
DpnI	GATC	3 cut(s)	167, 215, 260
DpnII	GATC	3 cut(s)	165, 213, 258
Eam1104I	CTCTTC	2 cut(s)	397, 599
EarI	CTCTTC	2 cut(s)	397, 599
Eco130I	CCWWGG	2 cut(s)	64, 262
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	2 cut(s)	64, 262
ErhI	CCWWGG	2 cut(s)	64, 262
FaeI	CATG	6 cut(s)	16, 31, 68, 266, 449, 616
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	6 cut(s)	12, 27, 64, 262, 445, 612
FauI	CCCGC	1 cut(s)	9
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	316
FokI	GGATG	2 cut(s)	47, 388
Fsp4HI	GCNGC	1 cut(s)	316
FspBI	CTAG	3 cut(s)	227, 287, 522
GluI	GCNGC	1 cut(s)	316
Hin1II	CATG	6 cut(s)	16, 31, 68, 266, 449, 616
HinfI	GANTC	4 cut(s)	171, 267, 379, 442
HphI	GGTGA	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	170, 638
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	3 cut(s)	72, 350, 555
HpyCH4IV	ACGT	2 cut(s)	323, 533
HpyCH4V	TGCA	6 cut(s)	75, 136, 206, 273, 561, 601
HpyF3I	CTNAG	3 cut(s)	291, 481, 575
HpySE526I	ACGT	2 cut(s)	323, 533
Hsp92II	CATG	6 cut(s)	16, 31, 68, 266, 449, 616
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	165, 213, 258
LpnPI	CCDG	7 cut(s)	30, 66, 84, 153, 278, 479, 506
Lsp1109I	GCAGC	1 cut(s)	302
MaeI	CTAG	3 cut(s)	227, 287, 522
MaeII	ACGT	2 cut(s)	323, 533
MaeIII	GTNAC	3 cut(s)	23, 344, 628
MalI	GATC	3 cut(s)	167, 215, 260
MboI	GATC	3 cut(s)	165, 213, 258
MboII	GAAGA	2 cut(s)	414, 616
MluCI	AATT	2 cut(s)	197, 423
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	3 cut(s)	131, 215, 398
MroXI	GAANNNNTTC	2 cut(s)	107, 383
MseI	TTAA	5 cut(s)	6, 327, 339, 366, 471
MslI	CAYNNNNRTG	2 cut(s)	32, 556
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	494
NcoI	CCATGG	2 cut(s)	64, 262
NdeII	GATC	3 cut(s)	165, 213, 258
NlaIII	CATG	6 cut(s)	16, 31, 68, 266, 449, 616
PdmI	GAANNNNTTC	2 cut(s)	107, 383
PfeI	GAWTC	3 cut(s)	171, 379, 442
PflMI	CCANNNNNTGG	1 cut(s)	499
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	1 cut(s)	317
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	51
Psp1406I	AACGTT	2 cut(s)	323, 533
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PstI	CTGCAG	1 cut(s)	603
PvuII	CAGCTG	1 cut(s)	44
RseI	CAYNNNNRTG	2 cut(s)	32, 556
SaqAI	TTAA	5 cut(s)	6, 327, 339, 366, 471
SatI	GCNGC	1 cut(s)	316
Sau3AI	GATC	3 cut(s)	165, 213, 258
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	494
SfcI	CTRYAG	1 cut(s)	599
SmiMI	CAYNNNNRTG	2 cut(s)	32, 556
Sse9I	AATT	2 cut(s)	197, 423
SsiI	CCGC	2 cut(s)	16, 477
SspMI	CTAG	3 cut(s)	227, 287, 522
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	2 cut(s)	64, 262
TaaI	ACNGT	3 cut(s)	72, 350, 555
TaiI	ACGT	2 cut(s)	326, 536
TaqI	TCGA	2 cut(s)	400, 527
TasI	AATT	2 cut(s)	197, 423
TfiI	GAWTC	3 cut(s)	171, 379, 442
Tru1I	TTAA	5 cut(s)	6, 327, 339, 366, 471
Tru9I	TTAA	5 cut(s)	6, 327, 339, 366, 471
TscAI	CASTG	2 cut(s)	133, 591
TseI	GCWGC	1 cut(s)	315
TspDTI	ATGAA	2 cut(s)	392, 434
TspGWI	ACGGA	2 cut(s)	206, 527
TspRI	CASTG	2 cut(s)	133, 591
Van91I	CCANNNNNTGG	1 cut(s)	499
VspI	ATTAAT	1 cut(s)	339
XmnI	GAANNNNTTC	2 cut(s)	107, 383
XspI	CTAG	3 cut(s)	227, 287, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.