pycom17g23800

Pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006370
Physical Location & Seq
Forward (+)
22089474 .. 22090310
837 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g23800.1

Sequence Viewer

Length: 837 bp
ATGATTGAGCGCGGTATTGAGCCCAATGTCGTTACATATAATGTCTTCTTGAATGGTATTTGTAGGCGTGCGAGTTTGCACCCTCAGGAAAGGTTTGAGAAGACGATAAGGAACGCAGAGAAGGTGTTTGAGGAAATGCGGAAGAGAGGGATAGAGCCCGATGTCACTAGTTTTTCGATTGTGCTTCATGTTTATAGCCGTGCTCATAAGCCCGAGTTGTCGCTTGATAAGCTCAAACTGATGAGGGAGAGAGGGATATTCCCCACAGTGGAAACTTACACTTCGGTTGTAAAGTGTCTTTGCTCGTGCGGGAGACTTGAGGATGCAGAGGAGCTGCTTGGTGAAATGGTGAGAAGTGGGGTTAGTCCATGTGCAGCTACGTATAATTGTTTCTTCAAAGAGTACAGGGGGAGAAAGAACGGGGAAGGTGCTCTGAAGTTGTACAGGAAAATGAAGGAGGATGGTTTGTGTGTGCCCAGTATGCACACCTATAACATATTGGTGGGAATGCTTTTGGAATTGAATCGAATGGAGATTGTGAAAGAAATATGGAATGATATGAAAGAGAGTGGAGTGGGACCGGATTTGGATTCGTATACCATGTTGATTCATGGGTTATGTGCAAAACAGAAGTGGAGGGAGGCTTGTCAGTTCTTTGTAGAGATGATAGAGAAGGGTCTTCTTCCTCAGAAGATTACTTTTGAGACACTCTACAAAGGGTTGATACAATCTGATATGTTGAGAACTTGGCGAAGATTGAAGAAGAAACTCGATGAAGAGTCTATTTCGTTTGGGTCAGAGTTCCAAAAGTATCACCTTAAGCCATTTAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

279

Amino Acids

32.44

Weight (kDa)

8.95

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 6 - 128 4.9e-10 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 36 - 65 2.9e-07 PPR repeat family
PPR_3 PF13812 41 - 98 2.7e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 59 - 101 6.2e-06 PPR repeat family
TPR_24 PF23276 61 - 178 1.1e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 84 - 117 7.9e-11 PPR repeat
PPR_2 PF13041 92 - 134 4.4e-09 PPR repeat family
PPR PF01535 92 - 121 3.7e-08 PPR repeat
PPR_3 PF13812 112 - 171 2.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 123 - 171 1.2e-08 PPR repeat family
PPR_2 PF13041 159 - 207 3e-12 PPR repeat family
PPR_1 PF12854 191 - 222 2.6e-07 PPR repeat
PPR_2 PF13041 198 - 241 1.2e-09 PPR repeat family
PPR PF01535 198 - 227 6.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 596
AccII CGCG 1 cut(s) 12
AciI CCGC 3 cut(s) 12, 139, 309
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 2 cut(s) 404, 443
AfiI CCNNNNNNNGG 1 cut(s) 268
AflII CTTAAG 1 cut(s) 818
AgsI TTSAA 4 cut(s) 52, 397, 523, 760
AhlI ACTAGT 1 cut(s) 167
AluBI AGCT 3 cut(s) 232, 334, 377
AluI AGCT 3 cut(s) 232, 334, 377
Alw21I GWGCWC 2 cut(s) 205, 433
Alw26I GTCTC 2 cut(s) 307, 698
Ama87I CYCGRG 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 334, 374
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 578
AsuHPI GGTGA 3 cut(s) 353, 361, 806
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 578
AxyI CCTNAGG 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 477
BanII GRGCYC 2 cut(s) 24, 159
BauI CACGAG 1 cut(s) 304
BbsI GAAGAC 3 cut(s) 37, 107, 671
Bbv12I GWGCWC 2 cut(s) 205, 433
BbvI GCAGC 2 cut(s) 321, 386
BccI CCATC 1 cut(s) 455
BceAI ACGGC 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 307, 698
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 1 cut(s) 168
BfrI CTTAAG 1 cut(s) 818
BisI GCNGC 2 cut(s) 335, 375
BlsI GCNGC 2 cut(s) 336, 376
Bme18I GGWCC 1 cut(s) 578
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 1 cut(s) 579
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 471
BpiI GAAGAC 3 cut(s) 37, 107, 671
BpuEI CTTGAG 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 477
Bse21I CCTNAGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 328, 466
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 98, 701
BseNI ACTGG 1 cut(s) 477
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 2 cut(s) 321, 386
BsgI GTGCAG 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 12
BsiHKAI GWGCWC 2 cut(s) 205, 433
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 1 cut(s) 581
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 307, 698
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 513
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 5 cut(s) 24, 159, 205, 433, 477
Bsp1407I TGTACA 1 cut(s) 441
BspACI CCGC 3 cut(s) 12, 139, 309
BspCNI CTCAG 2 cut(s) 97, 700
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 579
BspTI CTTAAG 1 cut(s) 818
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 1 cut(s) 477
BssNAI GTATAC 1 cut(s) 597
BssSI CACGAG 1 cut(s) 304
Bst1107I GTATAC 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 2 cut(s) 137, 771
BstAFI CTTAAG 1 cut(s) 818
BstAUI TGTACA 1 cut(s) 441
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 84, 687
BstF5I GGATG 2 cut(s) 328, 466
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 12
BstMAI GTCTC 2 cut(s) 307, 698
BstMWI GCNNNNNNNGC 2 cut(s) 229, 481
BstSLI GKGCMC 1 cut(s) 477
BstSNI TACGTA 1 cut(s) 381
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 321, 386
BstV2I GAAGAC 3 cut(s) 37, 107, 671
BstZ17I GTATAC 1 cut(s) 597
Bsu36I CCTNAGG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 328, 466
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 578
Csp6I GTAC 2 cut(s) 403, 442
CviAII CATG 4 cut(s) 188, 369, 601, 611
CviJI RGCY 9 cut(s) 22, 157, 198, 211, 232, 334, 377, 644, 823
CviKI_1 RGCY 9 cut(s) 22, 157, 198, 211, 232, 334, 377, 644, 823
CviQI GTAC 2 cut(s) 403, 442
DdeI CTNAG 2 cut(s) 84, 687
Eam1104I CTCTTC 2 cut(s) 137, 771
EarI CTCTTC 2 cut(s) 137, 771
Eco105I TACGTA 1 cut(s) 381
Eco24I GRGCYC 2 cut(s) 24, 159
Eco47I GGWCC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 455
Eco81I CCTNAGG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 212
EcoT38I GRGCYC 2 cut(s) 24, 159
FaeI CATG 4 cut(s) 191, 372, 604, 614
FaqI GGGAC 1 cut(s) 591
FatI CATG 4 cut(s) 187, 368, 600, 610
FauI CCCGC 1 cut(s) 302
FblI GTMKAC 1 cut(s) 596
Fnu4HI GCNGC 2 cut(s) 335, 375
FokI GGATG 2 cut(s) 335, 473
FriOI GRGCYC 2 cut(s) 24, 159
Fsp4HI GCNGC 2 cut(s) 335, 375
FspBI CTAG 1 cut(s) 168
GlaI GCGC 1 cut(s) 11
GluI GCNGC 2 cut(s) 335, 375
HapII CCGG 1 cut(s) 581
HhaI GCGC 1 cut(s) 12
Hin1II CATG 4 cut(s) 191, 372, 604, 614
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 4 cut(s) 523, 590, 607, 779
HpaII CCGG 1 cut(s) 581
HphI GGTGA 3 cut(s) 353, 361, 806
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 4 cut(s) 435, 690, 733, 799
Hpy188III TCNNGA 2 cut(s) 49, 86
Hpy8I GTNNAC 1 cut(s) 597
HpyAV CCTTC 4 cut(s) 115, 419, 448, 667
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 5 cut(s) 79, 326, 374, 484, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 481
HpyF3I CTNAG 2 cut(s) 84, 687
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 4 cut(s) 191, 372, 604, 614
HspAI GCGC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 5 cut(s) 71, 391, 430, 490, 594
Lsp1109I GCAGC 2 cut(s) 321, 386
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 2 cut(s) 31, 163
MhlI GDGCHC 5 cut(s) 24, 159, 205, 433, 477
MluCI AATT 2 cut(s) 385, 518
MlyI GAGTC 1 cut(s) 788
MseI TTAA 1 cut(s) 819
MslI CAYNNNNRTG 1 cut(s) 500
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 1 cut(s) 581
Mva1269I GAATGC 1 cut(s) 513
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 229, 481
NlaIII CATG 4 cut(s) 191, 372, 604, 614
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 163
PctI GAATGC 1 cut(s) 513
PfeI GAWTC 3 cut(s) 523, 590, 607
PkrI GCNGC 2 cut(s) 336, 376
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
Ppu21I YACGTR 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 1 cut(s) 578
RsaI GTAC 2 cut(s) 404, 443
RsaNI GTAC 2 cut(s) 403, 442
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 1 cut(s) 819
SatI GCNGC 2 cut(s) 335, 375
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 1 cut(s) 788
SduI GDGCHC 5 cut(s) 24, 159, 205, 433, 477
SetI ASST 9 cut(s) 95, 126, 234, 336, 379, 383, 430, 491, 819
SfaNI GCATC 1 cut(s) 313
SinI GGWCC 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 2 cut(s) 317, 818
SmoI CTYRAG 2 cut(s) 317, 818
SnaBI TACGTA 1 cut(s) 381
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 2 cut(s) 385, 518
SsiI CCGC 3 cut(s) 12, 139, 309
SspMI CTAG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 383
TaqI TCGA 3 cut(s) 176, 526, 771
TasI AATT 2 cut(s) 385, 518
TatI WGTACW 2 cut(s) 402, 441
TfiI GAWTC 3 cut(s) 523, 590, 607
Tru1I TTAA 1 cut(s) 819
Tru9I TTAA 1 cut(s) 819
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 2 cut(s) 334, 374
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 5 cut(s) 176, 467, 575, 599, 789
TspRI CASTG 1 cut(s) 273
Vha464I CTTAAG 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 596
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.