Rorug03G0204600

Pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006370
Physical Location & Seq
Reverse (-)
18138359 .. 18139435
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0204600.1

Sequence Viewer

Length: 582 bp
ATGGCCGCCACTGCTGTGAATATGAAGCTACTCCACTTCCACTCCCCACGTGCCAATCCCCACCCGCCATCGTTCTCCCCACTTCTCACCAACACCAGCCATGCCTTCCCTAACAACCTCAGTTTACATTCCGGCCACTCCCACCACCTAAATCCAACGGCGGTGGTCAAAGCGGCGGTGGATAAGGACAGCCTTGTGCCCTCCGACGACGCCGAAGATGGAGTCTTGCTTGGTACCATGAAATTGCCTGATGATACTGACTTTCCCAGATTCCAAATCTTGCTCTTCCAGTGGGCTAACAGTCTCTGCCAAGGAGCAAATCTACCGCTTGATATGCCTTTGAAGGTTGACAAAATAGCAGGTGGGACTAGATTGGGTTTCATTACAATTGGGGATGGGGAGACGGAGGTCATTGGCTACATTGATTGCTTGGTTTTCCCTCCAGAAGGTGGTTCCGGTCCCATTTTTCGAGCTGTTAGAAATGGACGTTTGAAGGATCGGGTCCTTCCCGGGGAGCCCAGGATCATGAGAAATCTTATGCAGGCTCTTCAGAAGTCGGTTCAAATCGCTAGAGTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

193

Amino Acids

21.02

Weight (kDa)

7.1

Isoelectric Point (pI)

23.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7148 PF23650 72 - 191 2.7e-57 Domain of unknown function (DUF7148)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 350
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 449
AciI CCGC 6 cut(s) 6, 65, 161, 173, 176, 326
AclWI GGATC 2 cut(s) 504, 530
AcoI YGGCCR 2 cut(s) 3, 133
AcuI CTGAAG 1 cut(s) 533
AcvI CACGTG 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 3 cut(s) 446, 449, 511
AgsI TTSAA 3 cut(s) 343, 493, 563
AjnI CCWGG 1 cut(s) 518
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 2 cut(s) 28, 473
AluI AGCT 2 cut(s) 28, 473
Alw26I GTCTC 2 cut(s) 308, 395
AlwI GGATC 2 cut(s) 504, 530
AlwNI CAGNNNCTG 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 509
AoxI GGCC 2 cut(s) 3, 133
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
Asp718I GGTACC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 458, 502
AsuC2I CCSGG 2 cut(s) 510, 511
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 509
AvaII GGWCC 2 cut(s) 458, 502
BaeGI GKGCMC 1 cut(s) 201
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 519
BbrPI CACGTG 1 cut(s) 50
BccI CCATC 3 cut(s) 76, 212, 389
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 520
BcnI CCSGG 2 cut(s) 510, 511
BcoDI GTCTC 2 cut(s) 308, 395
BfaI CTAG 2 cut(s) 369, 570
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 2 cut(s) 6, 174
BlsI GCNGC 2 cut(s) 7, 175
Bme1390I CCNGG 3 cut(s) 510, 511, 520
Bme18I GGWCC 2 cut(s) 458, 502
BmeT110I CYCGRG 1 cut(s) 509
BmgT120I GGNCC 2 cut(s) 458, 502
BmiI GGNNCC 5 cut(s) 235, 454, 460, 503, 516
BmrFI CCNGG 3 cut(s) 510, 511, 520
BoxI GACNNNNGTC 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 426
BpuMI CCSGG 2 cut(s) 510, 511
BsaAI YACGTR 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 310, 509, 510, 518
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 449, 511
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 520
BseDI CCNNGG 4 cut(s) 310, 509, 510, 518
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 3 cut(s) 446, 449, 511
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 289
BseSI GKGCMC 1 cut(s) 201
BshFI GGCC 2 cut(s) 5, 135
BshNI GGYRCC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 3 cut(s) 132, 456, 510
BslFI GGGAC 2 cut(s) 379, 444
BslI CCNNNNNNNGG 3 cut(s) 446, 449, 511
BsmAI GTCTC 2 cut(s) 308, 395
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 379, 444
BsnI GGCC 2 cut(s) 5, 135
BsoBI CYCGRG 1 cut(s) 509
Bsp1286I GDGCHC 2 cut(s) 201, 519
Bsp143I GATC 2 cut(s) 496, 522
BspACI CCGC 6 cut(s) 6, 65, 161, 173, 176, 326
BspANI GGCC 2 cut(s) 5, 135
BspCNI CTCAG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 525
BspLI GGNNCC 5 cut(s) 235, 454, 460, 503, 516
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 2 cut(s) 504, 530
BspQI GCTCTTC 2 cut(s) 290, 552
BspT107I GGYRCC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 4 cut(s) 310, 509, 510, 518
BssMI GATC 2 cut(s) 496, 522
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 2 cut(s) 290, 552
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 1 cut(s) 119
BstENI CCTNNNNNAGG 1 cut(s) 444
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 2 cut(s) 499, 525
BstMAI GTCTC 2 cut(s) 308, 395
BstMBI GATC 2 cut(s) 496, 522
BstMWI GCNNNNNNNGC 2 cut(s) 11, 334
BstNI CCWGG 1 cut(s) 520
BstPAI GACNNNNGTC 1 cut(s) 407
BstSCI CCNGG 3 cut(s) 508, 509, 518
BstSLI GKGCMC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 5, 135
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 9, 296
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 306
CciI TCATGA 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 458, 502
Cfr9I CCCGGG 1 cut(s) 509
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 234
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 3 cut(s) 101, 238, 526
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 498, 524
DpnII GATC 2 cut(s) 496, 522
EaeI YGGCCR 2 cut(s) 3, 133
Eam1104I CTCTTC 2 cut(s) 290, 552
EarI CTCTTC 2 cut(s) 290, 552
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 458, 502
Eco57I CTGAAG 1 cut(s) 533
Eco72I CACGTG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 509
EcoNI CCTNNNNNAGG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 3 cut(s) 104, 241, 529
FaiI YATR 6 cut(s) 23, 102, 239, 335, 527, 539
FaqI GGGAC 2 cut(s) 379, 444
FatI CATG 3 cut(s) 100, 237, 525
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 6, 174
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 2 cut(s) 6, 174
FspBI CTAG 2 cut(s) 369, 570
GluI GCNGC 2 cut(s) 6, 174
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 2 cut(s) 5, 135
HapII CCGG 3 cut(s) 132, 456, 510
HgaI GACGC 1 cut(s) 218
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 3 cut(s) 104, 241, 529
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 2 cut(s) 222, 270
HpaII CCGG 3 cut(s) 132, 456, 510
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 2 cut(s) 125, 349
Hpy188I TCNGA 2 cut(s) 205, 552
Hpy188III TCNNGA 2 cut(s) 443, 526
Hpy8I GTNNAC 2 cut(s) 125, 349
Hpy99I CGWCG 2 cut(s) 209, 212
HpyAV CCTTC 5 cut(s) 115, 337, 440, 487, 515
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 2 cut(s) 49, 487
HpyCH4V TGCA 1 cut(s) 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 334
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 2 cut(s) 49, 487
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 3 cut(s) 104, 241, 529
KpnI GGTACC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 496, 522
LguI GCTCTTC 2 cut(s) 290, 552
LmnI GCTCC 2 cut(s) 314, 514
MaeI CTAG 2 cut(s) 369, 570
MaeII ACGT 2 cut(s) 49, 487
MalI GATC 2 cut(s) 498, 524
MboI GATC 2 cut(s) 496, 522
MboII GAAGA 3 cut(s) 227, 277, 539
MfeI CAATTG 1 cut(s) 387
MhlI GDGCHC 2 cut(s) 201, 519
MluCI AATT 2 cut(s) 242, 387
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 2 cut(s) 179, 228
MnlI CCTC 4 cut(s) 128, 211, 400, 450
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 3 cut(s) 132, 456, 510
MspR9I CCNGG 3 cut(s) 510, 511, 520
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 520
MwoI GCNNNNNNNGC 2 cut(s) 11, 334
NciI CCSGG 2 cut(s) 510, 511
NdeII GATC 2 cut(s) 496, 522
NlaIII CATG 3 cut(s) 104, 241, 529
NlaIV GGNNCC 5 cut(s) 235, 454, 460, 503, 516
OliI CACNNNNGTG 1 cut(s) 14
PagI TCATGA 1 cut(s) 525
PaqCI CACCTGC 1 cut(s) 350
PciSI GCTCTTC 2 cut(s) 290, 552
PfeI GAWTC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 2 cut(s) 7, 175
PleI GAGTC 1 cut(s) 230
PmaCI CACGTG 1 cut(s) 50
PmlI CACGTG 1 cut(s) 50
PpsI GAGTC 1 cut(s) 230
Ppu21I YACGTR 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 502
PshAI GACNNNNGTC 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 518
PspCI CACGTG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 5 cut(s) 235, 454, 460, 503, 516
PspPI GGNCC 2 cut(s) 458, 502
PspPPI RGGWCCY 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 306
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
RseI CAYNNNNRTG 1 cut(s) 14
SapI GCTCTTC 2 cut(s) 290, 552
SatI GCNGC 2 cut(s) 6, 174
Sau3AI GATC 2 cut(s) 496, 522
Sau96I GGNCC 2 cut(s) 458, 502
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 3 cut(s) 510, 511, 520
SduI GDGCHC 2 cut(s) 201, 519
SinI GGWCC 2 cut(s) 458, 502
SmaI CCCGGG 1 cut(s) 511
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 242, 387
SsiI CCGC 6 cut(s) 6, 65, 161, 173, 176, 326
SspMI CTAG 2 cut(s) 369, 570
StyD4I CCNGG 3 cut(s) 508, 509, 518
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 2 cut(s) 52, 490
TaqI TCGA 1 cut(s) 469
TasI AATT 2 cut(s) 242, 387
TauI GCSGC 2 cut(s) 8, 176
TfiI GAWTC 1 cut(s) 270
TscAI CASTG 2 cut(s) 16, 296
TspDTI ATGAA 3 cut(s) 38, 254, 370
TspGWI ACGGA 1 cut(s) 419
TspMI CCCGGG 1 cut(s) 509
TspRI CASTG 2 cut(s) 16, 296
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 458, 502
XagI CCTNNNNNAGG 1 cut(s) 444
XmaI CCCGGG 1 cut(s) 509
XspI CTAG 2 cut(s) 369, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.