Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006370

Physical Location & Seq

Genomic Coordinates Reverse (-)

14048666 .. 14056829

Gene Structure 8164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGACTTTGGTGGCCAAAAGTCGCTCAGCTTCTTTCCAGTTCTTCTCCTTTCTCCTTCATCTCCCTTCAGTGCAAATCCACCGCCACTGCTCTTCACTCTCCACCAACCTCCTTCATGACCCAAATGACGAGGCAAAACACTCAAATGATGCCGAATTAATATCAAAGATCCTTGTCCACCACCACAATCCCTTCCACTCCATGGAGTCTTCTCTGCAGCTCCACGGCATCACTCTCTCTCCTCAGCTCCTCAACCACACCCTCCTGCGCCTCATCCACAATTCCAAAATTGCCCTCGCCTTCTTCAACTATGCCAAGTCCCTCCCCGACCCTCCTCTCTCCACCGCCTCCTTCAACCTCCTCATTGACATCCTCGCCAAGGTTCGCCAGTACGACGTCGCTTGGCAGCTCATCCTCGAAATGGACAACTTCAACCTCACCCCCACCGCCTCCACATTTCTCATCCTCATTCGGCGGTTGATCTCCTCCGGCCTCACCCGCCAAGCCGTTCGGGCCTTTGAGGACATGGAAACCTTCGTCCAAACCAAACCCAGTAGCCAAGATTTTTGCTGTTTGCTTGATACCCTTTCCAAATACGGCCATGTTAAAGTTGCAGCTGAAGTTTTTAACAAAAAGAAGAATGGGTTTGTGCCTGACGTCAAAATGTACACTGTTTTGGTCTATGGGTGGTGTAAGATTGGTCGTTTTGATATGGCGGAGAGATTCTTGAGGGATATGATTGAGCGTGGTATTGAGCCCAATGTTGTAACTTACAATGTCTTCTTGAATGGTATTTGTAGGCGTGCGAGTTTGCACCCTGAGGAAAGGTTTGAGAGGACGATAAGGAATGCAGAGAAGGTGTTTAAGGAAATGTGGGAGAGAGGGATTGAGCCTGATGTCACTAGTTTTTCAATTGTGCTTCATGTTTATAGTCGGGCACATAAGCCCGAGTTGTCACTTGAAAAGCTGAAGCTGATGAGAGAGAGAGGGATTTGCCCCACTCTGGAAACTTATACTTCAGTTGTAAAGTGTCTTTGCTCATGCGGGAGACTTGAGGATGCAGAGGAATTGCTTGGTAAGATGGTGACGAGTGGGGTTAGTCCATGTGCAGCGACGTACAATTGTTTCTTCAAAGAATACAGGGGGAGAAAGGACAGCGAGGGTGCTTTGAAGCTGTACAGGAAGATGAAGGAGGAGGGTTTGTGCGTGCCCAGTATGCACACTTATAACATACTGGTGGGAATGCTTTTGGAATTGAATCGTATGGAGATTGTGAGAGAGATATGGAATGATATGAAAGAGAGTGGGGTAGGACCCGATTTGGATTCATATACCATGTTGATTCATGGGTTATGTGGGAAACAAAAGTGGAGAGAGGCTTGCCAGTTGTTTGTAGAGATGATAGAGAAGGGGCTTCTCCCTCAGAAGATTACTTTTGAGACGCTTTACAAAGGGCTAATACAATCTGATATGTTGAGAACTTGGAGAAGATTGAAAAAGAAGCTTGATGAAGAGTCTATTTCATTTGGATCAGAGTTTCAAAATTATCACCTTAAGCCATATAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

524

Amino Acids

60.37

Weight (kDa)

8.77

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17370
fragaria_vesca	FvH4_6g24130 FvH4_6g24130 FvH4_6g24130 FvH4_6g24130 FvH4_6g24130
malus_domestica	MD17G1234700.v1.1
prunus_persica	Prupe.3G134300_v2.0.a1
pyrus_communis	pycom17g23790 pycom17g23800
rosa_chinensis	RchiOBHm_Chr3g0483111 RchiOBHm_Chr3g0483141
rosa_laevigata	RLG00000023302
rosa_multiflora	Rmu_co8094512.1_g000001 Rmu_sc0000441.1_g000051 Rmu_sc0000977.1_g000020 Rmu_sc0003226.1_g000094
rosa_roxburghii	Rroxscaffold_6G00398650
rosa_rugosa	Rorug03G0204600
rosa_samantha	Rh3AG252100 Rh3AG252800 Rh3BG289100 Rh3BG289300 Rh3CG286300 Rh3DG282200
rosa_wichuraiana	Rw3G022820 Rw3G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1227
AatII	GACGTC	2 cut(s)	399, 660
AccB7I	CCANNNNNTGG	1 cut(s)	202
AciI	CCGC	7 cut(s)	82, 345, 447, 475, 499, 716, 1044
AclWI	GGATC	2 cut(s)	163, 1537
AcoI	YGGCCR	2 cut(s)	12, 598
AcuI	CTGAAG	4 cut(s)	51, 639, 989, 1002
AcyI	GRCGYC	2 cut(s)	396, 657
AfaI	GTAC	4 cut(s)	392, 668, 1118, 1178
AfiI	CCNNNNNNNGG	4 cut(s)	202, 379, 421, 1003
AflII	CTTAAG	1 cut(s)	1553
AhlI	ACTAGT	1 cut(s)	902
AluBI	AGCT	9 cut(s)	29, 220, 247, 409, 617, 967, 973, 1174, 1504
AluI	AGCT	9 cut(s)	29, 220, 247, 409, 617, 967, 973, 1174, 1504
Alw26I	GTCTC	2 cut(s)	1042, 1433
AlwI	GGATC	2 cut(s)	163, 1537
Ama87I	CYCGRG	1 cut(s)	947
AoxI	GGCC	4 cut(s)	12, 490, 513, 598
ApeKI	GCWGC	4 cut(s)	217, 406, 614, 1109
AseI	ATTAAT	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	513, 1313
AsuHPI	GGTGA	4 cut(s)	430, 487, 1096, 1541
AvaI	CYCGRG	1 cut(s)	947
AvaII	GGWCC	1 cut(s)	1313
AxyI	CCTNAGG	1 cut(s)	819
BaeGI	GKGCMC	2 cut(s)	940, 1212
BalI	TGGCCA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	759
BbsI	GAAGAC	2 cut(s)	201, 772
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	4 cut(s)	229, 418, 626, 1121
BccI	CCATC	1 cut(s)	1075
BceAI	ACGGC	3 cut(s)	241, 491, 613
BcoDI	GTCTC	2 cut(s)	1042, 1433
BcuI	ACTAGT	1 cut(s)	902
BfaI	CTAG	1 cut(s)	903
BfmI	CTRYAG	1 cut(s)	215
BfrI	CTTAAG	1 cut(s)	1553
BglI	GCCNNNNNGGC	1 cut(s)	512
BisI	GCNGC	4 cut(s)	218, 407, 615, 1110
BlpI	GCTNAGC	1 cut(s)	25
BlsI	GCNGC	4 cut(s)	219, 408, 616, 1111
Bme18I	GGWCC	1 cut(s)	1313
BmeT110I	CYCGRG	1 cut(s)	947
BmgT120I	GGNCC	2 cut(s)	513, 1313
BmiI	GGNNCC	1 cut(s)	1315
BmrI	ACTGGG	2 cut(s)	546, 1206
BmsI	GCATC	3 cut(s)	139, 237, 1048
BmuI	ACTGGG	2 cut(s)	546, 1206
BpiI	GAAGAC	2 cut(s)	201, 772
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	25
BpuEI	CTTGAG	2 cut(s)	748, 1073
BsaHI	GRCGYC	2 cut(s)	396, 657
BsaJI	CCNNGG	3 cut(s)	201, 223, 378
BsaXI	ACNNNNNCTCC	4 cut(s)	223, 253, 1187, 1217
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 379, 421, 1003
Bse1I	ACTGG	6 cut(s)	37, 388, 552, 1212, 1239, 1384
Bse21I	CCTNAGG	1 cut(s)	819
BseDI	CCNNGG	3 cut(s)	201, 223, 378
BseGI	GGATG	5 cut(s)	273, 369, 411, 462, 1063
BseLI	CCNNNNNNNGG	4 cut(s)	202, 379, 421, 1003
BseMII	CTCAG	4 cut(s)	39, 257, 810, 1436
BseNI	ACTGG	6 cut(s)	37, 388, 552, 1212, 1239, 1384
BseRI	GAGGAG	6 cut(s)	231, 239, 324, 350, 475, 1208
BseSI	GKGCMC	2 cut(s)	940, 1212
BseXI	GCAGC	4 cut(s)	229, 418, 626, 1121
BsgI	GTGCAG	1 cut(s)	1128
BshFI	GGCC	4 cut(s)	14, 492, 515, 600
BsiHKCI	CYCGRG	1 cut(s)	947
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	4 cut(s)	202, 379, 421, 1003
BsmAI	GTCTC	2 cut(s)	1042, 1433
BsmBI	CGTCTC	1 cut(s)	1433
BsmFI	GGGAC	1 cut(s)	304
BsmI	GAATGC	2 cut(s)	853, 1248
BsnI	GGCC	4 cut(s)	14, 492, 515, 600
BsoBI	CYCGRG	1 cut(s)	947
Bsp1286I	GDGCHC	3 cut(s)	759, 940, 1212
Bsp1407I	TGTACA	2 cut(s)	666, 1176
Bsp143I	GATC	3 cut(s)	168, 480, 1529
Bsp1720I	GCTNAGC	1 cut(s)	25
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	7 cut(s)	82, 345, 447, 475, 499, 716, 1044
BspANI	GGCC	4 cut(s)	14, 492, 515, 600
BspCNI	CTCAG	4 cut(s)	38, 256, 811, 1435
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	1315
BspMAI	CTGCAG	1 cut(s)	219
BspPI	GGATC	2 cut(s)	163, 1537
BspQI	GCTCTTC	1 cut(s)	97
BspTI	CTTAAG	1 cut(s)	1553
BsrGI	TGTACA	2 cut(s)	666, 1176
BsrI	ACTGG	6 cut(s)	37, 388, 552, 1212, 1239, 1384
BssECI	CCNNGG	3 cut(s)	201, 223, 378
BssMI	GATC	3 cut(s)	168, 480, 1529
BssNI	GRCGYC	2 cut(s)	396, 657
BssT1I	CCWWGG	2 cut(s)	201, 378
Bst4CI	ACNGT	1 cut(s)	673
Bst6I	CTCTTC	2 cut(s)	97, 1506
BstACI	GRCGYC	2 cut(s)	396, 657
BstAFI	CTTAAG	1 cut(s)	1553
BstAUI	TGTACA	2 cut(s)	666, 1176
BstC8I	GCNNGC	3 cut(s)	804, 1208, 1381
BstDEI	CTNAG	4 cut(s)	25, 243, 819, 1422
BstDSI	CCRYGG	2 cut(s)	201, 223
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	5 cut(s)	273, 369, 411, 462, 1063
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	3 cut(s)	171, 483, 1532
BstMAI	GTCTC	2 cut(s)	1042, 1433
BstMBI	GATC	3 cut(s)	168, 480, 1529
BstMWI	GCNNNNNNNGC	3 cut(s)	498, 512, 1216
BstSFI	CTRYAG	1 cut(s)	215
BstSLI	GKGCMC	2 cut(s)	940, 1212
BstV1I	GCAGC	4 cut(s)	229, 418, 626, 1121
BstV2I	GAAGAC	2 cut(s)	201, 772
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	819
BsuRI	GGCC	4 cut(s)	14, 492, 515, 600
BtgI	CCRYGG	2 cut(s)	201, 223
BtsCI	GGATG	5 cut(s)	273, 369, 411, 462, 1063
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	75, 85, 669
Cac8I	GCNNGC	3 cut(s)	804, 1208, 1381
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	513, 1313
CseI	GACGC	1 cut(s)	1450
Csp6I	GTAC	4 cut(s)	391, 667, 1117, 1177
CviAII	CATG	9 cut(s)	116, 202, 526, 602, 923, 1041, 1104, 1336, 1346
CviQI	GTAC	4 cut(s)	391, 667, 1117, 1177
DdeI	CTNAG	4 cut(s)	25, 243, 819, 1422
DpnI	GATC	3 cut(s)	170, 482, 1531
DpnII	GATC	3 cut(s)	168, 480, 1529
EaeI	YGGCCR	2 cut(s)	12, 598
Eam1104I	CTCTTC	2 cut(s)	97, 1506
EarI	CTCTTC	2 cut(s)	97, 1506
EciI	GGCGGA	1 cut(s)	731
Eco130I	CCWWGG	2 cut(s)	201, 378
Eco24I	GRGCYC	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	1313
Eco57I	CTGAAG	4 cut(s)	51, 639, 989, 1002
Eco81I	CCTNAGG	1 cut(s)	819
Eco88I	CYCGRG	1 cut(s)	947
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	1313
EcoT14I	CCWWGG	2 cut(s)	201, 378
EcoT38I	GRGCYC	1 cut(s)	759
ErhI	CCWWGG	2 cut(s)	201, 378
Esp3I	CGTCTC	1 cut(s)	1433
FaeI	CATG	9 cut(s)	119, 205, 529, 605, 926, 1044, 1107, 1339, 1349
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	9 cut(s)	115, 201, 525, 601, 922, 1040, 1103, 1335, 1345
FauI	CCCGC	2 cut(s)	506, 1037
Fnu4HI	GCNGC	4 cut(s)	218, 407, 615, 1110
FokI	GGATG	5 cut(s)	260, 356, 398, 449, 1070
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	4 cut(s)	218, 407, 615, 1110
FspBI	CTAG	1 cut(s)	903
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	4 cut(s)	218, 407, 615, 1110
HaeIII	GGCC	4 cut(s)	14, 492, 515, 600
HapII	CCGG	1 cut(s)	489
HgaI	GACGC	1 cut(s)	1450
HhaI	GCGC	1 cut(s)	270
Hin1I	GRCGYC	2 cut(s)	396, 657
Hin1II	CATG	9 cut(s)	119, 205, 529, 605, 926, 1044, 1107, 1339, 1349
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	1502
HinfI	GANTC	6 cut(s)	206, 723, 1258, 1325, 1342, 1514
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	4 cut(s)	430, 487, 1096, 1541
Hpy166II	GTNNAC	2 cut(s)	178, 669
Hpy188I	TCNGA	3 cut(s)	1425, 1468, 1534
Hpy188III	TCNNGA	4 cut(s)	116, 727, 784, 1004
Hpy8I	GTNNAC	2 cut(s)	178, 669
Hpy99I	CGWCG	3 cut(s)	398, 401, 1117
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4IV	ACGT	3 cut(s)	396, 657, 1115
HpyCH4V	TGCA	8 cut(s)	73, 217, 614, 814, 851, 1061, 1109, 1219
HpyF10VI	GCNNNNNNNGC	3 cut(s)	498, 512, 1216
HpyF3I	CTNAG	4 cut(s)	25, 243, 819, 1422
HpySE526I	ACGT	3 cut(s)	396, 657, 1115
Hsp92I	GRCGYC	2 cut(s)	396, 657
Hsp92II	CATG	9 cut(s)	119, 205, 529, 605, 926, 1044, 1107, 1339, 1349
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	168, 480, 1529
LguI	GCTCTTC	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	225, 252
Lsp1109I	GCAGC	4 cut(s)	229, 418, 626, 1121
LweI	GCATC	3 cut(s)	139, 237, 1048
MaeI	CTAG	1 cut(s)	903
MaeII	ACGT	3 cut(s)	396, 657, 1115
MaeIII	GTNAC	4 cut(s)	766, 898, 954, 1084
MalI	GATC	3 cut(s)	170, 482, 1531
MboI	GATC	3 cut(s)	168, 480, 1529
MfeI	CAATTG	2 cut(s)	912, 1120
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	3 cut(s)	759, 940, 1212
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	8 cut(s)	155, 280, 288, 912, 1067, 1120, 1253, 1543
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	215, 1523
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	5 cut(s)	158, 606, 627, 864, 1554
MslI	CAYNNNNRTG	2 cut(s)	144, 1235
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	1553
MspI	CCGG	1 cut(s)	489
MunI	CAATTG	2 cut(s)	912, 1120
Mva1269I	GAATGC	2 cut(s)	853, 1248
MwoI	GCNNNNNNNGC	3 cut(s)	498, 512, 1216
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	168, 480, 1529
NlaIII	CATG	9 cut(s)	119, 205, 529, 605, 926, 1044, 1107, 1339, 1349
NlaIV	GGNNCC	1 cut(s)	1315
NmuCI	GTSAC	3 cut(s)	898, 954, 1084
PagI	TCATGA	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	97
PctI	GAATGC	2 cut(s)	853, 1248
PfeI	GAWTC	4 cut(s)	723, 1258, 1325, 1342
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	219, 408, 616, 1111
PleI	GAGTC	2 cut(s)	214, 1522
PpsI	GAGTC	2 cut(s)	214, 1522
PpuMI	RGGWCCY	1 cut(s)	1313
PshBI	ATTAAT	1 cut(s)	158
PsiI	TTATAA	1 cut(s)	1227
Psp5II	RGGWCCY	1 cut(s)	1313
PspN4I	GGNNCC	1 cut(s)	1315
PspPI	GGNCC	2 cut(s)	513, 1313
PspPPI	RGGWCCY	1 cut(s)	1313
PstI	CTGCAG	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	4 cut(s)	392, 668, 1118, 1178
RsaNI	GTAC	4 cut(s)	391, 667, 1117, 1177
RseI	CAYNNNNRTG	2 cut(s)	144, 1235
SapI	GCTCTTC	1 cut(s)	97
SaqAI	TTAA	5 cut(s)	158, 606, 627, 864, 1554
SatI	GCNGC	4 cut(s)	218, 407, 615, 1110
Sau3AI	GATC	3 cut(s)	168, 480, 1529
Sau96I	GGNCC	2 cut(s)	513, 1313
SchI	GAGTC	2 cut(s)	215, 1523
SduI	GDGCHC	3 cut(s)	759, 940, 1212
SfaNI	GCATC	3 cut(s)	139, 237, 1048
SfcI	CTRYAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	1313
SmiMI	CAYNNNNRTG	2 cut(s)	144, 1235
SmlI	CTYRAG	3 cut(s)	727, 1052, 1553
SmoI	CTYRAG	3 cut(s)	727, 1052, 1553
SpeI	ACTAGT	1 cut(s)	902
Sse9I	AATT	8 cut(s)	155, 280, 288, 912, 1067, 1120, 1253, 1543
SsiI	CCGC	7 cut(s)	82, 345, 447, 475, 499, 716, 1044
SspMI	CTAG	1 cut(s)	903
StyI	CCWWGG	2 cut(s)	201, 378
TaaI	ACNGT	1 cut(s)	673
TaiI	ACGT	3 cut(s)	399, 660, 1118
TaqI	TCGA	1 cut(s)	417
TasI	AATT	8 cut(s)	155, 280, 288, 912, 1067, 1120, 1253, 1543
TatI	WGTACW	2 cut(s)	666, 1176
TfiI	GAWTC	4 cut(s)	723, 1258, 1325, 1342
Tru1I	TTAA	5 cut(s)	158, 606, 627, 864, 1554
Tru9I	TTAA	5 cut(s)	158, 606, 627, 864, 1554
TscAI	CASTG	3 cut(s)	75, 92, 676
TseFI	GTSAC	3 cut(s)	898, 954, 1084
TseI	GCWGC	4 cut(s)	217, 406, 614, 1109
Tsp45I	GTSAC	3 cut(s)	898, 954, 1084
TspDTI	ATGAA	9 cut(s)	47, 104, 911, 1202, 1310, 1317, 1334, 1512, 1524
TspRI	CASTG	3 cut(s)	75, 92, 676
Van91I	CCANNNNNTGG	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	1553
VpaK11BI	GGWCC	1 cut(s)	1313
VspI	ATTAAT	1 cut(s)	158
XagI	CCTNNNNNAGG	1 cut(s)	377
XspI	CTAG	1 cut(s)	903
ZraI	GACGTC	2 cut(s)	397, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.