RLG00000023302

Pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006370
Physical Location & Seq
Reverse (-)
21479417 .. 21484171
4755 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023302

Sequence Viewer

Length: 2010 bp
ATGGCACAGGGTCGCTTCTCCTCCTCTCTTCTTCTTCGTCTCCGTTCAGCTCGCCGGTTCTCCTCACTCCCCAACCTAACAACAACCCAAAACGACGCCGAACTGGTATCAAACATTCTCCTCCACCACCACAACCCCTTCCACGCCATGGAGTCCTCTCTCCAGCTCCACGGCATCACTCTCTCCCCCGACCTCCTCCACCACACTCTCCTCCGCCTCAAGCACAATTCCAAAATCGCCCTCGCCCTCTTCCACTACGCCAAGTCCCTCCCCTCCCCCCCGCCCCTCACCTCCGACGCCTTCCACCTCCTCATCGACATCGTCGCCAAGGTCCGCCAGTACGACGTCGCTTGGCAGCTCATCCTCGAAATGGACCGCCACAACCTCACCCCCACCGCCGCCACCTTCCTCATCCTCATCCGCCGCCTCATCGCCTCTGGCCTCACCCGCCAGGCCGTCCGGGCCTTCGACGACATCGAGACCTTCGTCCTGACCCGGCCCACCGCCCAAGACTTCTGCTCTCTACTCGACACCCTCTGTAAATACGGCTACGTTAAGCTCGCGGCTGAAGTTTTCAACAAAAGGAAGCATGACTATGTGGCCGATGTGAAAATGTACACTGTTCTGGTTTACGGGTGGTGTAAGATCGGCCGTTTCGATATGGCGGAGAGGAAGGCGAGTTTGCACCCTCAGGACAGGTTTGAGAGGACCATAAGGAATGCACTGAAGGTGTTCGATGAAATGTCCAGCAGAGGCATTGAGCCGGACGTGACTAGTTTTTCGGTCCTTCTTCATGTTTATAGCCGGGCGCATAAGCCGGAGTTGTCGCTTGATAAGCTCAAGGAAATGAGGGAGAGGGGGATTTGCCCCACCGTGGCGACTTACACTTCAGTTGTCAAGTGTCTCTGCTCTTGCGGAAGGCTTGAGGAAGCGGAGGAGTTGCTTGGTGAGATGGTGAGGAATGGGGTTAGTCCCTCTGCGGCTACGTATAATTGTTTCTTCAAAGAGTACAGGGGGAGAAAGGACTCGGAAAGTGCTTTGAAGTTGTATAGGAAGATGAAGGAGGATAGATTGTTTGCACCGAGTGTGCACACTTATAATATTTTGGTGGGGATGTTTTTGCAGCTGAATCGAGTGGAGATTGTGAGAGAGATATGGGATGACATGAAGGAGAGTGGGACAGGGCCGGATTTGGATTCGTATACGATGTTGGTTCATGGGTTATGTGAGAAGCAGAAGTGGAGAGAGGCGTGCCAGTTTTTTGTGGAGATGATAGAGAAGGGGCTTCTTCCTCAGAAAGAGATGATCAGGATGTGTTTTCTTTCTTGCTTATGTTTTGAGTGGATTATAGAATCTGTGGTCAAGTTACTTGCTGCTTCTATGGTTGACATAAAGGAAAACATTAACGATAACCTTCTTGCTTCAGACCATCACAGAGTTCTGATGGAATGGACAGGATGGATTAGGCCTTCCTTCAGCTGTGAATTTAAAAATATGATAGATTTCATTGGACACGATGGATCAGTTGTGATCTTGGACCCTGCAAAGCTCCAAAAGAATGGACGTTATTCATTTGAACAGAATGTTTGGTCCAACTACTACCCAAGACGAGGATTTCAAGGACACTCAACAATTGGCCAGATCTGTGATGGATGGCTACTTGGCTACAATATCATGCAAGCAGCTGTCATATATTGCATGAAAGTGGTTCCATCAGTTCTACTGCAATCAATAACCGCAGTAGTCATTCCCAGAGGTGGACGACAGTATGAGGATTTGCAACTCAAAGAACAGATTGAGAGCCTGAAAAAGGCATTAGCAAGCAAGGAAGGCCCAATATCTGTCAAGAAGGATAGTCTTTGGATATCACATGACATGGAGAAATCCTCCCTACCATCTGAGATAGTGGAGGAATATGGTCAACGTCAAGGTTCAGAAGCAGTCGCAAAGTCATTTGGGTATTTCAGCAATCAGAATGCAATGTTGAAGTGTACCGTCCCAACCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

670

Amino Acids

76.44

Weight (kDa)

8.42

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 231 - 331 2.5e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 238 - 267 2.3e-06 PPR repeat family
PPR_3 PF13812 243 - 300 1.2e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 258 - 303 8e-08 PPR repeat family
TPR_24 PF23276 264 - 378 1.8e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 286 - 319 4.7e-11 PPR repeat
PPR_2 PF13041 292 - 336 2.4e-11 PPR repeat family
PPR PF01535 294 - 323 2.7e-08 PPR repeat
PPR_3 PF13812 314 - 373 6.1e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 325 - 371 3.6e-08 PPR repeat family
PPR_2 PF13041 361 - 409 4e-11 PPR repeat family
PPR_2 PF13041 396 - 431 9.4e-06 PPR repeat family
PPR_1 PF12854 396 - 424 7.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1098
AatII GACGTC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 148
AccI GTMKAC 1 cut(s) 1202
AccII CGCG 1 cut(s) 563
AclWI GGATC 1 cut(s) 1528
AcoI YGGCCR 3 cut(s) 600, 649, 1636
AcsI RAATTY 1 cut(s) 1484
AcuI CTGAAG 5 cut(s) 588, 746, 873, 1407, 1459
AcyI GRCGYC 3 cut(s) 96, 297, 345
AdeI CACNNNGTG 1 cut(s) 1085
AfaI GTAC 4 cut(s) 341, 617, 1010, 1993
AfiI CCNNNNNNNGG 6 cut(s) 148, 370, 874, 1610, 1757, 1810
AgsI TTSAA 6 cut(s) 577, 1003, 1042, 1577, 1619, 1987
AhlI ACTAGT 1 cut(s) 773
AjiI CACGTC 1 cut(s) 769
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 9 cut(s) 50, 166, 358, 559, 838, 1126, 1479, 1549, 1685
AluI AGCT 9 cut(s) 50, 166, 358, 559, 838, 1126, 1479, 1549, 1685
Alw21I GWGCWC 1 cut(s) 1092
Alw26I GTCTC 3 cut(s) 44, 473, 908
Alw44I GTGCAC 1 cut(s) 1088
AlwI GGATC 1 cut(s) 1528
ApaLI GTGCAC 1 cut(s) 1088
ApeKI GCWGC 4 cut(s) 355, 1123, 1373, 1682
ApoI RAATTY 1 cut(s) 1484
ArsI GACNNNNNNTTYG 2 cut(s) 763, 795
Asp700I GAANNNNTTC 1 cut(s) 731
AspLEI GCGC 1 cut(s) 811
AsuC2I CCSGG 3 cut(s) 461, 496, 806
AsuHPI GGTGA 5 cut(s) 280, 379, 436, 959, 967
AvaII GGWCC 6 cut(s) 331, 373, 708, 784, 1537, 1590
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 1092
BalI TGGCCA 1 cut(s) 1638
Bbv12I GWGCWC 1 cut(s) 1092
BbvI GCAGC 4 cut(s) 367, 1135, 1360, 1694
BccI CCATC 9 cut(s) 946, 1437, 1438, 1452, 1511, 1643, 1647, 1720, 1903
BceAI ACGGC 4 cut(s) 187, 440, 562, 636
BcgI CGANNNNNNTGC 2 cut(s) 1112, 1146
BciT130I CCWGG 1 cut(s) 452
BclI TGATCA 1 cut(s) 1305
BcnI CCSGG 3 cut(s) 461, 496, 806
BcoDI GTCTC 3 cut(s) 44, 473, 908
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 1 cut(s) 774
BglI GCCNNNNNGGC 1 cut(s) 461
BglII AGATCT 1 cut(s) 1641
BisI GCNGC 8 cut(s) 356, 399, 424, 564, 981, 1124, 1374, 1683
BlsI GCNGC 8 cut(s) 357, 400, 425, 565, 982, 1125, 1375, 1684
Bme1390I CCNGG 4 cut(s) 452, 461, 496, 806
Bme18I GGWCC 6 cut(s) 331, 373, 708, 784, 1537, 1590
BmgBI CACGTC 1 cut(s) 769
BmiI GGNNCC 2 cut(s) 1539, 1710
BmrFI CCNGG 4 cut(s) 452, 461, 496, 806
BmsI GCATC 1 cut(s) 183
BoxI GACNNNNGTC 1 cut(s) 485
BplI GAGNNNNNCTC 2 cut(s) 1871, 1903
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 3 cut(s) 203, 824, 944
BpuMI CCSGG 3 cut(s) 461, 496, 806
BsaAI YACGTR 1 cut(s) 987
BsaHI GRCGYC 3 cut(s) 96, 297, 345
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 4 cut(s) 147, 169, 327, 873
Bsc4I CCNNNNNNNGG 6 cut(s) 148, 370, 874, 1610, 1757, 1810
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 3 cut(s) 108, 337, 1255
Bse21I CCTNAGG 1 cut(s) 690
Bse3DI GCAATG 1 cut(s) 1986
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 4 cut(s) 147, 169, 327, 873
BseGI GGATG 8 cut(s) 360, 411, 417, 1119, 1165, 1317, 1463, 1658
BseLI CCNNNNNNNGG 6 cut(s) 148, 370, 874, 1610, 1757, 1810
BseMI GCAATG 1 cut(s) 1986
BseMII CTCAG 3 cut(s) 704, 1307, 1890
BseNI ACTGG 3 cut(s) 108, 337, 1255
BseRI GAGGAG 8 cut(s) 10, 13, 52, 110, 185, 200, 299, 950
BseSI GKGCMC 1 cut(s) 1092
BseX3I CGGCCG 1 cut(s) 649
BseXI GCAGC 4 cut(s) 367, 1135, 1360, 1694
Bsh1236I CGCG 1 cut(s) 563
Bsh1285I CGRYCG 1 cut(s) 652
BsiEI CGRYCG 1 cut(s) 652
BsiHKAI GWGCWC 1 cut(s) 1092
BsiSI CCGG 7 cut(s) 55, 460, 496, 764, 805, 818, 1187
BslFI GGGAC 4 cut(s) 250, 957, 1192, 1982
BslI CCNNNNNNNGG 6 cut(s) 148, 370, 874, 1610, 1757, 1810
BsmAI GTCTC 3 cut(s) 44, 473, 908
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 4 cut(s) 250, 957, 1192, 1982
BsmI GAATGC 2 cut(s) 724, 1981
Bso31I GGTCTC 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 1092
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 5 cut(s) 645, 1305, 1520, 1530, 1641
Bsp19I CCATGG 1 cut(s) 147
BspCNI CTCAG 3 cut(s) 703, 1306, 1891
BspFNI CGCG 1 cut(s) 563
BspLI GGNNCC 2 cut(s) 1539, 1710
BspPI GGATC 1 cut(s) 1528
BspTNI GGTCTC 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 1986
BsrFI RCCGGY 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 615
BsrI ACTGG 3 cut(s) 108, 337, 1255
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 4 cut(s) 147, 169, 327, 873
BssMI GATC 5 cut(s) 645, 1305, 1520, 1530, 1641
BssNAI GTATAC 1 cut(s) 1203
BssNI GRCGYC 3 cut(s) 96, 297, 345
BssT1I CCWWGG 2 cut(s) 147, 327
Bst1107I GTATAC 1 cut(s) 1203
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 4 cut(s) 622, 874, 1767, 1996
Bst6I CTCTTC 2 cut(s) 33, 254
BstACI GRCGYC 3 cut(s) 96, 297, 345
BstAUI TGTACA 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 987
BstC8I GCNNGC 5 cut(s) 52, 561, 1252, 1680, 1822
BstDEI CTNAG 3 cut(s) 690, 1293, 1899
BstDSI CCRYGG 3 cut(s) 147, 169, 873
BstENI CCTNNNNNAGG 1 cut(s) 1808
BstF5I GGATG 8 cut(s) 360, 411, 417, 1119, 1165, 1317, 1463, 1658
BstFNI CGCG 1 cut(s) 563
BstHHI GCGC 1 cut(s) 811
BstKTI GATC 5 cut(s) 648, 1308, 1523, 1533, 1644
BstMAI GTCTC 3 cut(s) 44, 473, 908
BstMBI GATC 5 cut(s) 645, 1305, 1520, 1530, 1641
BstMCI CGRYCG 1 cut(s) 652
BstMWI GCNNNNNNNGC 4 cut(s) 447, 461, 835, 1830
BstNI CCWGG 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 485
BstSCI CCNGG 4 cut(s) 450, 459, 494, 804
BstSLI GKGCMC 1 cut(s) 1092
BstSNI TACGTA 1 cut(s) 987
BstUI CGCG 1 cut(s) 563
BstV1I GCAGC 4 cut(s) 367, 1135, 1360, 1694
BstX2I RGATCY 1 cut(s) 1641
BstXI CCANNNNNNTGG 1 cut(s) 1559
BstYI RGATCY 1 cut(s) 1641
BstZ17I GTATAC 1 cut(s) 1203
BstZI CGGCCG 1 cut(s) 649
Bsu36I CCTNAGG 1 cut(s) 690
BtgI CCRYGG 3 cut(s) 147, 169, 873
BtgZI GCGATG 1 cut(s) 415
BtrI CACGTC 1 cut(s) 769
BtsCI GGATG 8 cut(s) 360, 411, 417, 1119, 1165, 1317, 1463, 1658
BtsIMutI CAGTG 2 cut(s) 618, 722
Cac8I GCNNGC 5 cut(s) 52, 561, 1252, 1680, 1822
CfoI GCGC 1 cut(s) 811
Cfr10I RCCGGY 1 cut(s) 54
CseI GACGC 2 cut(s) 104, 305
Csp6I GTAC 4 cut(s) 340, 616, 1009, 1992
CviAII CATG 9 cut(s) 148, 590, 794, 1165, 1217, 1675, 1699, 1871, 1876
CviQI GTAC 4 cut(s) 340, 616, 1009, 1992
DdeI CTNAG 3 cut(s) 690, 1293, 1899
DpnI GATC 5 cut(s) 647, 1307, 1522, 1532, 1643
DpnII GATC 5 cut(s) 645, 1305, 1520, 1530, 1641
DraI TTTAAA 1 cut(s) 1489
DraIII CACNNNGTG 1 cut(s) 1085
EaeI YGGCCR 3 cut(s) 600, 649, 1636
EagI CGGCCG 1 cut(s) 649
Eam1104I CTCTTC 2 cut(s) 33, 254
EarI CTCTTC 2 cut(s) 33, 254
EciI GGCGGA 4 cut(s) 203, 323, 410, 680
EclXI CGGCCG 1 cut(s) 649
Eco105I TACGTA 1 cut(s) 987
Eco130I CCWWGG 2 cut(s) 147, 327
Eco147I AGGCCT 1 cut(s) 1468
Eco31I GGTCTC 1 cut(s) 473
Eco32I GATATC 1 cut(s) 1866
Eco47I GGWCC 6 cut(s) 331, 373, 708, 784, 1537, 1590
Eco52I CGGCCG 1 cut(s) 649
Eco57I CTGAAG 5 cut(s) 588, 746, 873, 1407, 1459
Eco81I CCTNAGG 1 cut(s) 690
EcoNI CCTNNNNNAGG 1 cut(s) 1808
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 1 cut(s) 1866
EcoT14I CCWWGG 2 cut(s) 147, 327
ErhI CCWWGG 2 cut(s) 147, 327
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 9 cut(s) 151, 593, 797, 1168, 1220, 1678, 1702, 1874, 1879
FaqI GGGAC 4 cut(s) 250, 957, 1192, 1982
FatI CATG 9 cut(s) 147, 589, 793, 1164, 1216, 1674, 1698, 1870, 1875
FauI CCCGC 2 cut(s) 288, 455
FbaI TGATCA 1 cut(s) 1305
FblI GTMKAC 1 cut(s) 1202
Fnu4HI GCNGC 8 cut(s) 356, 399, 424, 564, 981, 1124, 1374, 1683
FokI GGATG 8 cut(s) 347, 398, 404, 1126, 1172, 1324, 1470, 1665
Fsp4HI GCNGC 8 cut(s) 356, 399, 424, 564, 981, 1124, 1374, 1683
FspBI CTAG 1 cut(s) 774
GlaI GCGC 1 cut(s) 810
GluI GCNGC 8 cut(s) 356, 399, 424, 564, 981, 1124, 1374, 1683
GsuI CTGGAG 1 cut(s) 146
HapII CCGG 7 cut(s) 55, 460, 496, 764, 805, 818, 1187
HgaI GACGC 2 cut(s) 104, 305
HhaI GCGC 1 cut(s) 811
Hin1I GRCGYC 3 cut(s) 96, 297, 345
Hin1II CATG 9 cut(s) 151, 593, 797, 1168, 1220, 1678, 1702, 1874, 1879
Hin6I GCGC 1 cut(s) 809
HinP1I GCGC 1 cut(s) 809
HincII GTYRAC 2 cut(s) 1387, 1922
HindII GTYRAC 2 cut(s) 1387, 1922
HinfI GANTC 5 cut(s) 152, 1025, 1129, 1196, 1352
HpaII CCGG 7 cut(s) 55, 460, 496, 764, 805, 818, 1187
HphI GGTGA 5 cut(s) 280, 379, 436, 959, 967
Hpy166II GTNNAC 8 cut(s) 618, 631, 1090, 1203, 1387, 1760, 1922, 1992
Hpy188I TCNGA 8 cut(s) 295, 1030, 1296, 1426, 1443, 1900, 1936, 1974
Hpy188III TCNNGA 5 cut(s) 478, 490, 692, 1309, 1846
Hpy8I GTNNAC 8 cut(s) 618, 631, 1090, 1203, 1387, 1760, 1922, 1992
Hpy99I CGWCG 6 cut(s) 98, 299, 326, 347, 350, 473
HpyCH4III ACNGT 4 cut(s) 622, 874, 1767, 1996
HpyCH4IV ACGT 6 cut(s) 345, 552, 768, 986, 1564, 1924
HpyF10VI GCNNNNNNNGC 4 cut(s) 447, 461, 835, 1830
HpyF3I CTNAG 3 cut(s) 690, 1293, 1899
HpySE526I ACGT 6 cut(s) 345, 552, 768, 986, 1564, 1924
Hsp92I GRCGYC 3 cut(s) 96, 297, 345
Hsp92II CATG 9 cut(s) 151, 593, 797, 1168, 1220, 1678, 1702, 1874, 1879
HspAI GCGC 1 cut(s) 809
Ksp22I TGATCA 1 cut(s) 1305
Kzo9I GATC 5 cut(s) 645, 1305, 1520, 1530, 1641
LmnI GCTCC 2 cut(s) 171, 1554
Lsp1109I GCAGC 4 cut(s) 367, 1135, 1360, 1694
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 774
MaeII ACGT 6 cut(s) 345, 552, 768, 986, 1564, 1924
MaeIII GTNAC 2 cut(s) 769, 1365
MalI GATC 5 cut(s) 647, 1307, 1522, 1532, 1643
MboI GATC 5 cut(s) 645, 1305, 1520, 1530, 1641
MboII GAAGA 8 cut(s) 20, 23, 26, 241, 782, 991, 1066, 1280
MfeI CAATTG 1 cut(s) 1632
MflI RGATCY 1 cut(s) 1641
MhlI GDGCHC 1 cut(s) 1092
MlsI TGGCCA 1 cut(s) 1638
MluCI AATT 4 cut(s) 226, 991, 1484, 1632
MluNI TGGCCA 1 cut(s) 1638
MlyI GAGTC 2 cut(s) 161, 1019
MmeI TCCRAC 2 cut(s) 318, 1617
Mox20I TGGCCA 1 cut(s) 1638
MroXI GAANNNNTTC 1 cut(s) 731
MscI TGGCCA 1 cut(s) 1638
MseI TTAA 3 cut(s) 555, 1404, 1488
MslI CAYNNNNRTG 2 cut(s) 594, 1703
Msp20I TGGCCA 1 cut(s) 1638
MspA1I CMGCKG 3 cut(s) 1126, 1479, 1685
MspI CCGG 7 cut(s) 55, 460, 496, 764, 805, 818, 1187
MspR9I CCNGG 4 cut(s) 452, 461, 496, 806
MunI CAATTG 1 cut(s) 1632
Mva1269I GAATGC 2 cut(s) 724, 1981
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 1 cut(s) 563
MwoI GCNNNNNNNGC 4 cut(s) 447, 461, 835, 1830
NciI CCSGG 3 cut(s) 461, 496, 806
NcoI CCATGG 1 cut(s) 147
NdeII GATC 5 cut(s) 645, 1305, 1520, 1530, 1641
NlaIII CATG 9 cut(s) 151, 593, 797, 1168, 1220, 1678, 1702, 1874, 1879
NlaIV GGNNCC 2 cut(s) 1539, 1710
NmuCI GTSAC 1 cut(s) 769
PceI AGGCCT 1 cut(s) 1468
PcsI WCGNNNNNNNCGW 3 cut(s) 474, 483, 654
PctI GAATGC 2 cut(s) 724, 1981
PdmI GAANNNNTTC 1 cut(s) 731
PfeI GAWTC 3 cut(s) 1129, 1196, 1352
PflFI GACNNNGTC 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 8 cut(s) 357, 400, 425, 565, 982, 1125, 1375, 1684
PleI GAGTC 2 cut(s) 160, 1019
PpsI GAGTC 2 cut(s) 160, 1019
Ppu21I YACGTR 1 cut(s) 987
PshAI GACNNNNGTC 1 cut(s) 485
PsiI TTATAA 1 cut(s) 1098
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 2 cut(s) 1539, 1710
PsuI RGATCY 1 cut(s) 1641
PsyI GACNNNGTC 1 cut(s) 320
PvuII CAGCTG 3 cut(s) 1126, 1479, 1685
RsaI GTAC 4 cut(s) 341, 617, 1010, 1993
RsaNI GTAC 4 cut(s) 340, 616, 1009, 1992
RseI CAYNNNNRTG 2 cut(s) 594, 1703
SaqAI TTAA 3 cut(s) 555, 1404, 1488
SatI GCNGC 8 cut(s) 356, 399, 424, 564, 981, 1124, 1374, 1683
Sau3AI GATC 5 cut(s) 645, 1305, 1520, 1530, 1641
SchI GAGTC 2 cut(s) 161, 1019
ScrFI CCNGG 4 cut(s) 452, 461, 496, 806
SduI GDGCHC 1 cut(s) 1092
SfaNI GCATC 1 cut(s) 183
SfiI GGCCNNNNNGGCC 1 cut(s) 461
SinI GGWCC 6 cut(s) 331, 373, 708, 784, 1537, 1590
SmiMI CAYNNNNRTG 2 cut(s) 594, 1703
SmlI CTYRAG 3 cut(s) 218, 839, 923
SmoI CTYRAG 3 cut(s) 218, 839, 923
SnaBI TACGTA 1 cut(s) 987
SpeI ACTAGT 1 cut(s) 773
Sse9I AATT 4 cut(s) 226, 991, 1484, 1632
SseBI AGGCCT 1 cut(s) 1468
SspI AATATT 1 cut(s) 1102
SspMI CTAG 1 cut(s) 774
StuI AGGCCT 1 cut(s) 1468
StyD4I CCNGG 4 cut(s) 450, 459, 494, 804
StyI CCWWGG 2 cut(s) 147, 327
TaaI ACNGT 4 cut(s) 622, 874, 1767, 1996
TaiI ACGT 6 cut(s) 348, 555, 771, 989, 1567, 1927
TaqI TCGA 8 cut(s) 315, 366, 468, 477, 528, 657, 735, 1132
TaqII GACCGA 1 cut(s) 772
TasI AATT 4 cut(s) 226, 991, 1484, 1632
TatI WGTACW 2 cut(s) 615, 1008
TauI GCSGC 4 cut(s) 401, 426, 566, 983
TfiI GAWTC 3 cut(s) 1129, 1196, 1352
Tru1I TTAA 3 cut(s) 555, 1404, 1488
Tru9I TTAA 3 cut(s) 555, 1404, 1488
TscAI CASTG 2 cut(s) 625, 729
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 4 cut(s) 355, 1123, 1373, 1682
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 8 cut(s) 753, 782, 1073, 1181, 1205, 1495, 1560, 1715
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 2 cut(s) 625, 729
Tth111I GACNNNGTC 1 cut(s) 320
Van91I CCANNNNNTGG 1 cut(s) 148
VneI GTGCAC 1 cut(s) 1088
VpaK11BI GGWCC 6 cut(s) 331, 373, 708, 784, 1537, 1590
XagI CCTNNNNNAGG 1 cut(s) 1808
XapI RAATTY 1 cut(s) 1484
XcmI CCANNNNNNNNNTGG 1 cut(s) 1646
XmiI GTMKAC 1 cut(s) 1202
XmnI GAANNNNTTC 1 cut(s) 731
XspI CTAG 1 cut(s) 774
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.