pycom17g23790

Pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006370
Physical Location & Seq
Forward (+)
22088731 .. 22089417
687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g23790.1

Sequence Viewer

Length: 687 bp
ATGATTTTTGCGGCCCAAAGTCGCGTCTGCTTATCCTTGCCTTGTTTCCAGTTATTCTCCTCTCTTGTTCGTTTCCCTTCAGTTCAAATCCATCGCTCCTGCTCTTCATTCCCCACCCTTAATGACCCAAATGGTGACACAAAGGACGCTAATGATGCTGAATTGATATCGAAAATCCTTGTCCACCACCATAATCCCTTCCACGCCATGGAGTCCTCTCTCCAACTCCATGGTATTACTCTCTCCTCCCAACTTGTCCACCACACCCTCCTCCGCCTCACCAATAATTCCAAAATTGCTCTTGCCTTCTTCCAGTATGCCAAGTCCCTTCCCAACCCTCCTCTCACCACAGCCTCCTTCAACCTGCTCATCGACATCCTTGCCAAGGTCCGTCAGTATGACGTCGCTTGGCAGCTCATCGTTGAAATGGACAACTTCAACCTCACTCCCACCACTGCCACATTTCTTACCCTCATTCGCCGCTTGATCGATCCTCTGGCCTCACCCGCCAAGCCGTTCGGGCCTTTGACGACATCGAGACCTTTGTCCAAACCAAGCCCAGTTGCCAAGATTTTTGCTTTTTGCTTGATACCCTTTGCAAATACGGTCATGTTAAGGTTGCAACTGAAGTTTTTAACAAAAGGAAGCACGAATTTGTCCCCGATGTCAAAATGTACACTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

229

Amino Acids

25.38

Weight (kDa)

9.63

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 117 - 162 1.1e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 405
Acc36I ACCTGC 1 cut(s) 372
AccB7I CCANNNNNTGG 1 cut(s) 208
AccII CGCG 1 cut(s) 24
AciI CCGC 4 cut(s) 11, 274, 481, 507
AclWI GGATC 1 cut(s) 485
AcsI RAATTY 1 cut(s) 652
AcuI CTGAAG 2 cut(s) 63, 647
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 1 cut(s) 676
AfiI CCNNNNNNNGG 2 cut(s) 208, 385
AgsI TTSAA 4 cut(s) 86, 361, 425, 439
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 1 cut(s) 485
AoxI GGCC 3 cut(s) 12, 498, 521
ApeKI GCWGC 1 cut(s) 412
ApoI RAATTY 1 cut(s) 652
AspS9I GGNCC 3 cut(s) 13, 388, 521
AsuHPI GGTGA 4 cut(s) 146, 271, 337, 495
AvaII GGWCC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 99
BceAI ACGGC 1 cut(s) 499
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BcoDI GTCTC 1 cut(s) 532
BfuAI ACCTGC 1 cut(s) 372
BglI GCCNNNNNGGC 1 cut(s) 520
BisI GCNGC 3 cut(s) 12, 413, 481
BlsI GCNGC 3 cut(s) 13, 414, 482
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 3 cut(s) 13, 388, 521
BmrI ACTGGG 1 cut(s) 554
BmsI GCATC 1 cut(s) 145
BmuI ACTGGG 1 cut(s) 554
BoxI GACNNNNGTC 1 cut(s) 544
Bsa29I ATCGAT 1 cut(s) 489
BsaHI GRCGYC 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 532
BsaJI CCNNGG 3 cut(s) 207, 229, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 385
Bse1I ACTGG 3 cut(s) 49, 313, 560
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 3 cut(s) 207, 229, 384
BseGI GGATG 1 cut(s) 375
BseLI CCNNNNNNNGG 2 cut(s) 208, 385
BseNI ACTGG 3 cut(s) 49, 313, 560
BseRI GAGGAG 4 cut(s) 49, 235, 260, 330
BseXI GCAGC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 3 cut(s) 14, 500, 523
BshVI ATCGAT 1 cut(s) 489
BslFI GGGAC 2 cut(s) 310, 643
BslI CCNNNNNNNGG 2 cut(s) 208, 385
BsmAI GTCTC 1 cut(s) 532
BsmFI GGGAC 2 cut(s) 310, 643
BsnI GGCC 3 cut(s) 14, 500, 523
Bso31I GGTCTC 1 cut(s) 532
Bsp1407I TGTACA 1 cut(s) 674
Bsp143I GATC 2 cut(s) 486, 490
Bsp19I CCATGG 2 cut(s) 207, 229
BspACI CCGC 4 cut(s) 11, 274, 481, 507
BspANI GGCC 3 cut(s) 14, 500, 523
BspDI ATCGAT 1 cut(s) 489
BspFNI CGCG 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 372
BspPI GGATC 1 cut(s) 485
BspQI GCTCTTC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 532
BsrGI TGTACA 1 cut(s) 674
BsrI ACTGG 3 cut(s) 49, 313, 560
BssECI CCNNGG 3 cut(s) 207, 229, 384
BssMI GATC 2 cut(s) 486, 490
BssNI GRCGYC 1 cut(s) 402
BssT1I CCWWGG 3 cut(s) 207, 229, 384
Bst4CI ACNGT 2 cut(s) 607, 681
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 402
BstAUI TGTACA 1 cut(s) 674
BstDSI CCRYGG 2 cut(s) 207, 229
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 375
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 2 cut(s) 489, 493
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 2 cut(s) 486, 490
BstMWI GCNNNNNNNGC 3 cut(s) 155, 506, 520
BstPAI GACNNNNGTC 1 cut(s) 544
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 424
BstXI CCANNNNNNTGG 1 cut(s) 230
Bsu15I ATCGAT 1 cut(s) 489
BsuRI GGCC 3 cut(s) 14, 500, 523
BsuTUI ATCGAT 1 cut(s) 489
BtgI CCRYGG 2 cut(s) 207, 229
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 375
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 453, 677
BveI ACCTGC 1 cut(s) 372
Cfr13I GGNCC 3 cut(s) 13, 388, 521
ClaI ATCGAT 1 cut(s) 489
CseI GACGC 2 cut(s) 13, 155
Csp6I GTAC 1 cut(s) 675
CviAII CATG 3 cut(s) 208, 230, 610
CviJI RGCY 7 cut(s) 14, 353, 415, 500, 514, 523, 558
CviKI_1 RGCY 7 cut(s) 14, 353, 415, 500, 514, 523, 558
CviQI GTAC 1 cut(s) 675
DpnI GATC 2 cut(s) 488, 492
DpnII GATC 2 cut(s) 486, 490
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 263
Eco130I CCWWGG 3 cut(s) 207, 229, 384
Eco31I GGTCTC 1 cut(s) 532
Eco32I GATATC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 388
Eco57I CTGAAG 2 cut(s) 63, 647
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoRV GATATC 1 cut(s) 168
EcoT14I CCWWGG 3 cut(s) 207, 229, 384
ErhI CCWWGG 3 cut(s) 207, 229, 384
FaeI CATG 3 cut(s) 211, 233, 613
FaiI YATR 6 cut(s) 192, 209, 231, 318, 399, 611
FaqI GGGAC 2 cut(s) 310, 643
FatI CATG 3 cut(s) 207, 229, 609
FauI CCCGC 1 cut(s) 514
Fnu4HI GCNGC 3 cut(s) 12, 413, 481
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 12, 413, 481
GluI GCNGC 3 cut(s) 12, 413, 481
HaeIII GGCC 3 cut(s) 14, 500, 523
HgaI GACGC 2 cut(s) 13, 155
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 3 cut(s) 211, 233, 613
HinfI GANTC 1 cut(s) 212
HphI GGTGA 4 cut(s) 146, 271, 337, 495
Hpy166II GTNNAC 3 cut(s) 184, 259, 677
Hpy188III TCNNGA 1 cut(s) 537
Hpy8I GTNNAC 3 cut(s) 184, 259, 677
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 5 cut(s) 87, 208, 316, 338, 367
HpyCH4III ACNGT 2 cut(s) 607, 681
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 2 cut(s) 599, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 506, 520
HpySE526I ACGT 1 cut(s) 402
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 3 cut(s) 211, 233, 613
Kzo9I GATC 2 cut(s) 486, 490
LguI GCTCTTC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 6 cut(s) 62, 112, 326, 377, 482, 573
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 145
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 488, 492
MboI GATC 2 cut(s) 486, 490
MboII GAAGA 2 cut(s) 96, 301
MluCI AATT 4 cut(s) 161, 286, 294, 652
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 247
MseI TTAA 3 cut(s) 120, 614, 635
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 155, 506, 520
NcoI CCATGG 2 cut(s) 207, 229
NdeII GATC 2 cut(s) 486, 490
NlaIII CATG 3 cut(s) 211, 233, 613
NmuCI GTSAC 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 3 cut(s) 13, 414, 482
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PshAI GACNNNNGTC 1 cut(s) 544
PspPI GGNCC 3 cut(s) 13, 388, 521
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
SapI GCTCTTC 1 cut(s) 109
SaqAI TTAA 3 cut(s) 120, 614, 635
SatI GCNGC 3 cut(s) 12, 413, 481
Sau3AI GATC 2 cut(s) 486, 490
Sau96I GGNCC 3 cut(s) 13, 388, 521
SchI GAGTC 1 cut(s) 221
SetI ASST 7 cut(s) 366, 390, 405, 417, 444, 544, 620
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 1 cut(s) 388
Sse9I AATT 4 cut(s) 161, 286, 294, 652
SsiI CCGC 4 cut(s) 11, 274, 481, 507
StyI CCWWGG 3 cut(s) 207, 229, 384
TaaI ACNGT 2 cut(s) 607, 681
TaiI ACGT 1 cut(s) 405
TaqI TCGA 4 cut(s) 170, 372, 489, 536
TasI AATT 4 cut(s) 161, 286, 294, 652
TatI WGTACW 1 cut(s) 674
TauI GCSGC 2 cut(s) 14, 483
Tru1I TTAA 3 cut(s) 120, 614, 635
Tru9I TTAA 3 cut(s) 120, 614, 635
TscAI CASTG 2 cut(s) 460, 684
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 2 cut(s) 460, 684
Van91I CCANNNNNTGG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 388
XagI CCTNNNNNAGG 1 cut(s) 383
XapI RAATTY 1 cut(s) 652
ZraI GACGTC 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.