Rmu_sc0000441.1_g000051

Pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000441.1
OG0006370
Physical Location & Seq
Reverse (-)
193941 .. 194327
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000441.1_g000051.1.cds

Sequence Viewer

Length: 387 bp
atgaaggaggatagattgtttgcgccgagtgtgcacacttataatactttggtggggatgtttttgcagctgaatcgagtggagattgtgagagagatatgggatgacatgaaagagagcggggtggggccggatttggattcgtatacaatgttgattcatgggctatgtgagaagcagaagtggagagaggcgtgccagttttttgtggatatgatagagaaggggcttcttcctcagaaagttacttttgagacactctacagagggttaatacagtctgatatgttgagaacttggagaagattgaagaagaaactcgatgaagagtctgttacttttggatcggagtttcaaaattatcaccttaagccatataggagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

128

Amino Acids

15.34

Weight (kDa)

7.77

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 146
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 352
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 2 cut(s) 310, 356
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 248
Alw44I GTGCAC 1 cut(s) 32
AlwI GGATC 1 cut(s) 352
AoxI GGCC 1 cut(s) 128
ApaLI GTGCAC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 67
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcoDI GTCTC 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 262
BfrI CTTAAG 1 cut(s) 368
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 199
BseGI GGATG 2 cut(s) 63, 109
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 1 cut(s) 79
BshFI GGCC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 1 cut(s) 352
BspTI CTTAAG 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 199
BssMI GATC 1 cut(s) 344
BssNAI GTATAC 1 cut(s) 147
Bst1107I GTATAC 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 321
BstAFI CTTAAG 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 63, 109
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 347
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 1 cut(s) 344
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 79
BstZ17I GTATAC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 63, 109
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 2 cut(s) 109, 161
CviJI RGCY 5 cut(s) 70, 130, 166, 229, 373
CviKI_1 RGCY 5 cut(s) 70, 130, 166, 229, 373
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
FaeI CATG 2 cut(s) 112, 164
FatI CATG 2 cut(s) 108, 160
FauI CCCGC 1 cut(s) 113
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 2 cut(s) 70, 116
Fsp4HI GCNGC 1 cut(s) 68
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 130
HapII CCGG 1 cut(s) 131
HhaI GCGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 112, 164
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 4 cut(s) 73, 140, 157, 329
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 34, 147
Hpy188I TCNGA 3 cut(s) 240, 283, 349
Hpy8I GTNNAC 2 cut(s) 34, 147
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 34, 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 2 cut(s) 112, 164
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 344
LpnPI CCDG 2 cut(s) 144, 212
Lsp1109I GCAGC 1 cut(s) 79
MaeIII GTNAC 2 cut(s) 244, 334
MalI GATC 1 cut(s) 346
MbiI CCGCTC 1 cut(s) 120
MboI GATC 1 cut(s) 344
MboII GAAGA 5 cut(s) 224, 315, 322, 325, 338
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 358
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 3 cut(s) 184, 246, 260
MseI TTAA 2 cut(s) 272, 369
MspA1I CMGCKG 1 cut(s) 70
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 1 cut(s) 344
NlaIII CATG 2 cut(s) 112, 164
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 51
PfeI GAWTC 3 cut(s) 73, 140, 157
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PsiI TTATAA 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 70
SaqAI TTAA 2 cut(s) 272, 369
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 1 cut(s) 344
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 338
SduI GDGCHC 1 cut(s) 36
SetI ASST 2 cut(s) 72, 369
SfcI CTRYAG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 1 cut(s) 358
SsiI CCGC 1 cut(s) 120
TaaI ACNGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 76, 321
TasI AATT 1 cut(s) 358
TfiI GAWTC 3 cut(s) 73, 140, 157
Tru1I TTAA 2 cut(s) 272, 369
Tru9I TTAA 2 cut(s) 272, 369
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 17, 125, 149, 339
Vha464I CTTAAG 1 cut(s) 368
VneI GTGCAC 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.