Rmu_co8094512.1_g000001

Pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8094512.1
OG0006370
Physical Location & Seq
Forward (+)
28 .. 596
569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8094512.1_g000001.1.cds

Sequence Viewer

Length: 569 bp
atgtacactgttctggtttacgggtggtgtaagatcggccgtttcgatatggcggagaggttcttgagggatatgatcgagcgaggtgttgagcccaatgtggttacttacaatgtgtttctggatgggatttgtaggaaggcgagtttgcaccctcaggacaggtttgagagaaccataagaaatgcactgaaggtgttcgacgaaatgtccagcagaggcattgagccggacgtgacgagtttttcgatccttcttcatgtttatagccgggcgcataagcccgagttgtcgcttgataagctcaaggaaatgagggagagggggatttgccccaccgtggcgacttacacttcagttgttaagtgtctttgctcttgcgggaggcttgaggaagcggaggagttgcttggtgagatggtgaggaatggggttagtccctctgcggctacgtataattgtttcttcaaagagtacagggggagaaaggactcggaaagtgctttgaagttgtataggaagatgaaggaggatagattgtttgcgccgagtgtgcacacttataatat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

189

Amino Acids

21.87

Weight (kDa)

8.64

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AciI CCGC 4 cut(s) 53, 381, 398, 446
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 37
AcuI CTGAAG 2 cut(s) 212, 339
AfaI GTAC 2 cut(s) 5, 476
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 2 cut(s) 469, 508
AhdI GACNNNNNGTC 1 cut(s) 208
AjiI CACGTC 1 cut(s) 235
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 1 cut(s) 558
Alw44I GTGCAC 1 cut(s) 554
AlwI GGATC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 1 cut(s) 37
ApaLI GTGCAC 1 cut(s) 554
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 2 cut(s) 277, 547
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 425, 433
AvaI CYCGRG 1 cut(s) 284
AxyI CCTNAGG 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 558
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 558
BccI CCATC 2 cut(s) 119, 412
BceAI ACGGC 1 cut(s) 24
BcnI CCSGG 1 cut(s) 272
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 272
BmeRI GACNNNNNGTC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 272
BpuEI CTTGAG 3 cut(s) 85, 290, 410
BpuMI CCSGG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse21I CCTNAGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 1 cut(s) 558
BseX3I CGGCCG 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 558
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 2 cut(s) 230, 271
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 96, 558
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 33, 75, 249
BspACI CCGC 4 cut(s) 53, 381, 398, 446
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 169
BspPI GGATC 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 3 cut(s) 33, 75, 249
Bst4CI ACNGT 2 cut(s) 10, 340
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 453
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 130
BstHHI GCGC 2 cut(s) 277, 547
BstKTI GATC 3 cut(s) 36, 78, 252
BstMBI GATC 3 cut(s) 33, 75, 249
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 301, 553
BstSCI CCNGG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 558
BstSNI TACGTA 1 cut(s) 453
BstZI CGGCCG 1 cut(s) 37
Bsu36I CCTNAGG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 6, 188
CfoI GCGC 2 cut(s) 277, 547
Csp6I GTAC 2 cut(s) 4, 475
CviAII CATG 1 cut(s) 260
CviJI RGCY 8 cut(s) 39, 94, 229, 270, 283, 304, 388, 449
CviKI_1 RGCY 8 cut(s) 39, 94, 229, 270, 283, 304, 388, 449
CviQI GTAC 2 cut(s) 4, 475
DdeI CTNAG 1 cut(s) 156
DpnI GATC 3 cut(s) 35, 77, 251
DpnII GATC 3 cut(s) 33, 75, 249
DriI GACNNNNNGTC 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 37
EagI CGGCCG 1 cut(s) 37
Eam1105I GACNNNNNGTC 1 cut(s) 208
EciI GGCGGA 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 37
Eco105I TACGTA 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 96
Eco52I CGGCCG 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 212, 339
Eco81I CCTNAGG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 263
FaiI YATR 9 cut(s) 50, 74, 179, 261, 267, 279, 456, 516, 564
FaqI GGGAC 1 cut(s) 423
FatI CATG 1 cut(s) 259
FauI CCCGC 1 cut(s) 374
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 447
GlaI GCGC 2 cut(s) 276, 546
GluI GCNGC 1 cut(s) 447
HaeIII GGCC 1 cut(s) 39
HapII CCGG 2 cut(s) 230, 271
HhaI GCGC 2 cut(s) 277, 547
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 2 cut(s) 275, 545
HinP1I GCGC 2 cut(s) 275, 545
HinfI GANTC 1 cut(s) 491
HpaII CCGG 2 cut(s) 230, 271
HphI GGTGA 2 cut(s) 425, 433
Hpy166II GTNNAC 3 cut(s) 6, 19, 556
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 3 cut(s) 64, 122, 158
Hpy8I GTNNAC 3 cut(s) 6, 19, 556
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 4 cut(s) 133, 187, 263, 520
HpyCH4III ACNGT 2 cut(s) 10, 340
HpyCH4IV ACGT 2 cut(s) 234, 452
HpyCH4V TGCA 3 cut(s) 151, 188, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 553
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 234, 452
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 2 cut(s) 275, 545
Kzo9I GATC 3 cut(s) 33, 75, 249
LpnPI CCDG 7 cut(s) 107, 143, 148, 226, 243, 284, 463
MaeII ACGT 2 cut(s) 234, 452
MaeIII GTNAC 2 cut(s) 103, 235
MalI GATC 3 cut(s) 35, 77, 251
MboI GATC 3 cut(s) 33, 75, 249
MboII GAAGA 3 cut(s) 248, 457, 532
MhlI GDGCHC 2 cut(s) 96, 558
MluCI AATT 1 cut(s) 457
MlyI GAGTC 1 cut(s) 485
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 363
MspI CCGG 2 cut(s) 230, 271
MspR9I CCNGG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 301, 553
NciI CCSGG 1 cut(s) 272
NdeII GATC 3 cut(s) 33, 75, 249
NlaIII CATG 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 245
PdmI GAANNNNTTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
Ppu21I YACGTR 1 cut(s) 453
PsiI TTATAA 1 cut(s) 564
RsaI GTAC 2 cut(s) 5, 476
RsaNI GTAC 2 cut(s) 4, 475
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 3 cut(s) 33, 75, 249
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 2 cut(s) 96, 558
SetI ASST 7 cut(s) 62, 88, 167, 198, 237, 306, 455
SmlI CTYRAG 3 cut(s) 64, 305, 389
SmoI CTYRAG 3 cut(s) 64, 305, 389
SnaBI TACGTA 1 cut(s) 453
Sse9I AATT 1 cut(s) 457
SsiI CCGC 4 cut(s) 53, 381, 398, 446
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 10, 340
TaiI ACGT 2 cut(s) 237, 455
TaqI TCGA 4 cut(s) 45, 78, 201, 248
TasI AATT 1 cut(s) 457
TatI WGTACW 2 cut(s) 3, 474
TauI GCSGC 1 cut(s) 449
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 13, 195
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 248, 539
TspRI CASTG 2 cut(s) 13, 195
VneI GTGCAC 1 cut(s) 554
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.