Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000977.1

Orthogroup ID

OG0006370

Physical Location & Seq

Genomic Coordinates Forward (+)

94145 .. 95350

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000977.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atggcacaatgttgcttctcctcctctcttcttcgttttctccgttcagctcgccggttctcctcactccccaacccaacaacaacgacccaaaacgacgccgaactggtatcaaacatcctcctccaccaccacaacccctttcacgccatggagtcctctctccagctccacggcatcactctctcccccgacctcctccaccacactctcctccgcctcaagcacaattccaaaatcgccctcgccctcttccactacgccaagtccctcccctcccccccgcccctcacctcccacgccttccacctcctcatcgacatcgtcgccaaggtccgccagtacgacgtcgcttggcagctcatcctcgaaatggaccgccacaacctcactcccaccgccgccaccttcctcatcctcatccgccgcctcatcgcctccggcctcacccgccaggccgtccgggccttcgacgacatcgagaccttcgtcctgacccgccccaccgcccaagacttctgcttcttactcgacaccctctgtaaatacggctacgttaagctcgcggctgaagttttcaacaaaaggaagcatgactatgtggccgatgtgaaaatgtacactgttctggtttacgggtggtgtaagatcggccgtttcgatatggcggagaggttcttgagggatatgatcgagcgaggtgttgagcccaatgtggttacttacaatgtgtttctggatgggatttgtaggaaggcgagtttgcaccctcaggacaggtttgagagaaccataagaaatgcactgaaggtgttcgacgaaatgtccagcagaggcattgagccggacgtgacgagtttttcgatccttcttcatgtttatagccgggcgcataagcccgagttgtcgcttgataagctcaaggaaatgagggagagggggatttgccccaccgtggcgacttacacttcagttgttaagtgtctttgctcttgcgggaggcttgaggaagcggaggagttgcttggtgagatggtgaggaatggggttagtccctctgcggctacgtataattgtttcttcaaagagtacagggggagaaaggactcggaaagtgctttgaagttgtataggaagatgaaggaggatagattgtttgcgccgagtgtgcacacttataatatattggtggggatacacttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

401

Amino Acids

45.94

Weight (kDa)

9.02

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17370
fragaria_vesca	FvH4_6g24130 FvH4_6g24130 FvH4_6g24130 FvH4_6g24130 FvH4_6g24130
malus_domestica	MD17G1234700.v1.1
prunus_persica	Prupe.3G134300_v2.0.a1
pyrus_communis	pycom17g23790 pycom17g23800
rosa_chinensis	RchiOBHm_Chr3g0483111 RchiOBHm_Chr3g0483141
rosa_laevigata	RLG00000023302
rosa_multiflora	Rmu_co8094512.1_g000001 Rmu_sc0000441.1_g000051 Rmu_sc0000977.1_g000020 Rmu_sc0003226.1_g000094
rosa_roxburghii	Rroxscaffold_6G00398650
rosa_rugosa	Rorug03G0204600
rosa_samantha	Rh3AG252100 Rh3AG252800 Rh3BG289100 Rh3BG289300 Rh3CG286300 Rh3DG282200
rosa_wichuraiana	Rw3G022820 Rw3G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1179, 1204
AatII	GACGTC	1 cut(s)	351
AccII	CGCG	1 cut(s)	566
AclWI	GGATC	1 cut(s)	859
AcoI	YGGCCR	2 cut(s)	603, 652
AcuI	CTGAAG	3 cut(s)	591, 827, 954
AcyI	GRCGYC	2 cut(s)	99, 348
AfaI	GTAC	3 cut(s)	344, 620, 1091
AfiI	CCNNNNNNNGG	2 cut(s)	373, 955
AgsI	TTSAA	3 cut(s)	580, 1084, 1123
AhdI	GACNNNNNGTC	1 cut(s)	823
AjiI	CACGTC	1 cut(s)	850
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	5 cut(s)	50, 169, 361, 562, 919
AluI	AGCT	5 cut(s)	50, 169, 361, 562, 919
Alw21I	GWGCWC	1 cut(s)	1173
Alw26I	GTCTC	1 cut(s)	476
Alw44I	GTGCAC	1 cut(s)	1169
AlwI	GGATC	1 cut(s)	859
Ama87I	CYCGRG	1 cut(s)	899
AoxI	GGCC	5 cut(s)	442, 456, 465, 603, 652
ApaLI	GTGCAC	1 cut(s)	1169
ApeKI	GCWGC	1 cut(s)	358
ArsI	GACNNNNNNTTYG	2 cut(s)	844, 876
Asp700I	GAANNNNTTC	1 cut(s)	812
AspLEI	GCGC	2 cut(s)	892, 1162
AspS9I	GGNCC	3 cut(s)	334, 376, 465
AsuC2I	CCSGG	2 cut(s)	464, 887
AsuHPI	GGTGA	4 cut(s)	283, 439, 1040, 1048
AvaI	CYCGRG	1 cut(s)	899
AvaII	GGWCC	2 cut(s)	334, 376
AxyI	CCTNAGG	1 cut(s)	771
BaeGI	GKGCMC	1 cut(s)	1173
BanII	GRGCYC	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	1173
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	2 cut(s)	734, 1027
BceAI	ACGGC	4 cut(s)	190, 443, 565, 639
BciT130I	CCWGG	1 cut(s)	455
BciVI	GTATCC	1 cut(s)	1188
BcnI	CCSGG	2 cut(s)	464, 887
BcoDI	GTCTC	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	1188
BglI	GCCNNNNNGGC	1 cut(s)	464
BisI	GCNGC	5 cut(s)	359, 402, 427, 567, 1062
BlsI	GCNGC	5 cut(s)	360, 403, 428, 568, 1063
Bme1390I	CCNGG	3 cut(s)	455, 464, 887
Bme18I	GGWCC	2 cut(s)	334, 376
BmeRI	GACNNNNNGTC	1 cut(s)	823
BmeT110I	CYCGRG	1 cut(s)	899
BmgBI	CACGTC	1 cut(s)	850
BmgT120I	GGNCC	3 cut(s)	334, 376, 465
BmrFI	CCNGG	3 cut(s)	455, 464, 887
BmsI	GCATC	1 cut(s)	186
BoxI	GACNNNNGTC	1 cut(s)	488
BpmI	CTGGAG	1 cut(s)	149
BpuEI	CTTGAG	4 cut(s)	206, 700, 905, 1025
BpuMI	CCSGG	2 cut(s)	464, 887
BsaAI	YACGTR	1 cut(s)	1068
BsaHI	GRCGYC	2 cut(s)	99, 348
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	4 cut(s)	150, 172, 330, 954
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 955
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	111, 340
Bse21I	CCTNAGG	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	4 cut(s)	150, 172, 330, 954
BseGI	GGATG	5 cut(s)	117, 363, 414, 420, 745
BseLI	CCNNNNNNNGG	2 cut(s)	373, 955
BseMII	CTCAG	1 cut(s)	785
BseNI	ACTGG	2 cut(s)	111, 340
BseRI	GAGGAG	8 cut(s)	10, 13, 52, 113, 188, 203, 302, 1031
BseSI	GKGCMC	1 cut(s)	1173
BseX3I	CGGCCG	1 cut(s)	652
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	566
Bsh1285I	CGRYCG	1 cut(s)	655
BshFI	GGCC	5 cut(s)	444, 458, 467, 605, 654
BsiEI	CGRYCG	1 cut(s)	655
BsiHKAI	GWGCWC	1 cut(s)	1173
BsiHKCI	CYCGRG	1 cut(s)	899
BsiSI	CCGG	5 cut(s)	55, 441, 463, 845, 886
BslFI	GGGAC	2 cut(s)	253, 1038
BslI	CCNNNNNNNGG	2 cut(s)	373, 955
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	253, 1038
BsnI	GGCC	5 cut(s)	444, 458, 467, 605, 654
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	899
Bsp1286I	GDGCHC	2 cut(s)	711, 1173
Bsp1407I	TGTACA	1 cut(s)	618
Bsp143I	GATC	3 cut(s)	648, 690, 864
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	5 cut(s)	444, 458, 467, 605, 654
BspCNI	CTCAG	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	566
BspPI	GGATC	1 cut(s)	859
BspTNI	GGTCTC	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	111, 340
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	4 cut(s)	150, 172, 330, 954
BssMI	GATC	3 cut(s)	648, 690, 864
BssNI	GRCGYC	2 cut(s)	99, 348
BssT1I	CCWWGG	2 cut(s)	150, 330
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	2 cut(s)	625, 955
Bst6I	CTCTTC	2 cut(s)	33, 257
BstACI	GRCGYC	2 cut(s)	99, 348
BstAUI	TGTACA	1 cut(s)	618
BstBAI	YACGTR	1 cut(s)	1068
BstC8I	GCNNGC	2 cut(s)	52, 564
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	3 cut(s)	150, 172, 954
BstF5I	GGATG	5 cut(s)	117, 363, 414, 420, 745
BstFNI	CGCG	1 cut(s)	566
BstHHI	GCGC	2 cut(s)	892, 1162
BstKTI	GATC	3 cut(s)	651, 693, 867
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	3 cut(s)	648, 690, 864
BstMCI	CGRYCG	1 cut(s)	655
BstMWI	GCNNNNNNNGC	4 cut(s)	450, 464, 916, 1168
BstNI	CCWGG	1 cut(s)	455
BstPAI	GACNNNNGTC	1 cut(s)	488
BstSCI	CCNGG	3 cut(s)	453, 462, 885
BstSLI	GKGCMC	1 cut(s)	1173
BstSNI	TACGTA	1 cut(s)	1068
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	370
BstZI	CGGCCG	1 cut(s)	652
Bsu36I	CCTNAGG	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	1188
BsuRI	GGCC	5 cut(s)	444, 458, 467, 605, 654
BtgI	CCRYGG	3 cut(s)	150, 172, 954
BtgZI	GCGATG	1 cut(s)	418
BtrI	CACGTC	1 cut(s)	850
BtsCI	GGATG	5 cut(s)	117, 363, 414, 420, 745
BtsIMutI	CAGTG	2 cut(s)	621, 803
Cac8I	GCNNGC	2 cut(s)	52, 564
CfoI	GCGC	2 cut(s)	892, 1162
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	334, 376, 465
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	343, 619, 1090
CviAII	CATG	3 cut(s)	151, 593, 875
CviQI	GTAC	3 cut(s)	343, 619, 1090
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	3 cut(s)	650, 692, 866
DpnII	GATC	3 cut(s)	648, 690, 864
DriI	GACNNNNNGTC	1 cut(s)	823
EaeI	YGGCCR	2 cut(s)	603, 652
EagI	CGGCCG	1 cut(s)	652
Eam1104I	CTCTTC	2 cut(s)	33, 257
Eam1105I	GACNNNNNGTC	1 cut(s)	823
EarI	CTCTTC	2 cut(s)	33, 257
EciI	GGCGGA	4 cut(s)	206, 326, 413, 683
EclXI	CGGCCG	1 cut(s)	652
Eco105I	TACGTA	1 cut(s)	1068
Eco130I	CCWWGG	2 cut(s)	150, 330
Eco24I	GRGCYC	1 cut(s)	711
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	2 cut(s)	334, 376
Eco52I	CGGCCG	1 cut(s)	652
Eco57I	CTGAAG	3 cut(s)	591, 827, 954
Eco81I	CCTNAGG	1 cut(s)	771
Eco88I	CYCGRG	1 cut(s)	899
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	2 cut(s)	150, 330
EcoT38I	GRGCYC	1 cut(s)	711
ErhI	CCWWGG	2 cut(s)	150, 330
FaeI	CATG	3 cut(s)	154, 596, 878
FaqI	GGGAC	2 cut(s)	253, 1038
FatI	CATG	3 cut(s)	150, 592, 874
FauI	CCCGC	4 cut(s)	291, 458, 506, 989
Fnu4HI	GCNGC	5 cut(s)	359, 402, 427, 567, 1062
FokI	GGATG	5 cut(s)	104, 350, 401, 407, 752
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	5 cut(s)	359, 402, 427, 567, 1062
GlaI	GCGC	2 cut(s)	891, 1161
GluI	GCNGC	5 cut(s)	359, 402, 427, 567, 1062
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	5 cut(s)	444, 458, 467, 605, 654
HapII	CCGG	5 cut(s)	55, 441, 463, 845, 886
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	892, 1162
Hin1I	GRCGYC	2 cut(s)	99, 348
Hin1II	CATG	3 cut(s)	154, 596, 878
Hin6I	GCGC	2 cut(s)	890, 1160
HinP1I	GCGC	2 cut(s)	890, 1160
HinfI	GANTC	2 cut(s)	155, 1106
HpaII	CCGG	5 cut(s)	55, 441, 463, 845, 886
HphI	GGTGA	4 cut(s)	283, 439, 1040, 1048
Hpy166II	GTNNAC	3 cut(s)	621, 634, 1171
Hpy188I	TCNGA	1 cut(s)	1111
Hpy188III	TCNNGA	5 cut(s)	481, 493, 679, 737, 773
Hpy8I	GTNNAC	3 cut(s)	621, 634, 1171
Hpy99I	CGWCG	6 cut(s)	101, 329, 350, 353, 476, 821
HpyAV	CCTTC	8 cut(s)	313, 418, 478, 496, 748, 802, 878, 1135
HpyCH4III	ACNGT	2 cut(s)	625, 955
HpyCH4IV	ACGT	4 cut(s)	348, 555, 849, 1067
HpyCH4V	TGCA	3 cut(s)	766, 803, 1171
HpyF10VI	GCNNNNNNNGC	4 cut(s)	450, 464, 916, 1168
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	4 cut(s)	348, 555, 849, 1067
Hsp92I	GRCGYC	2 cut(s)	99, 348
Hsp92II	CATG	3 cut(s)	154, 596, 878
HspAI	GCGC	2 cut(s)	890, 1160
Kzo9I	GATC	3 cut(s)	648, 690, 864
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	186
MaeII	ACGT	4 cut(s)	348, 555, 849, 1067
MaeIII	GTNAC	2 cut(s)	718, 850
MalI	GATC	3 cut(s)	650, 692, 866
MboI	GATC	3 cut(s)	648, 690, 864
MboII	GAAGA	6 cut(s)	20, 23, 244, 863, 1072, 1147
MhlI	GDGCHC	2 cut(s)	711, 1173
MluCI	AATT	2 cut(s)	229, 1072
MlyI	GAGTC	2 cut(s)	164, 1100
MroXI	GAANNNNTTC	1 cut(s)	812
MseI	TTAA	2 cut(s)	558, 978
MslI	CAYNNNNRTG	1 cut(s)	597
MspI	CCGG	5 cut(s)	55, 441, 463, 845, 886
MspR9I	CCNGG	3 cut(s)	455, 464, 887
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	4 cut(s)	450, 464, 916, 1168
NciI	CCSGG	2 cut(s)	464, 887
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	648, 690, 864
NlaIII	CATG	3 cut(s)	154, 596, 878
NmeAIII	GCCGAG	1 cut(s)	1188
NmuCI	GTSAC	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	5 cut(s)	40, 477, 486, 657, 860
PdmI	GAANNNNTTC	1 cut(s)	812
PflFI	GACNNNGTC	1 cut(s)	323
PkrI	GCNGC	5 cut(s)	360, 403, 428, 568, 1063
PleI	GAGTC	2 cut(s)	163, 1100
PpsI	GAGTC	2 cut(s)	163, 1100
Ppu21I	YACGTR	1 cut(s)	1068
PshAI	GACNNNNGTC	1 cut(s)	488
PsiI	TTATAA	2 cut(s)	1179, 1204
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspPI	GGNCC	3 cut(s)	334, 376, 465
PsyI	GACNNNGTC	1 cut(s)	323
RsaI	GTAC	3 cut(s)	344, 620, 1091
RsaNI	GTAC	3 cut(s)	343, 619, 1090
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	558, 978
SatI	GCNGC	5 cut(s)	359, 402, 427, 567, 1062
Sau3AI	GATC	3 cut(s)	648, 690, 864
Sau96I	GGNCC	3 cut(s)	334, 376, 465
SchI	GAGTC	2 cut(s)	164, 1100
ScrFI	CCNGG	3 cut(s)	455, 464, 887
SduI	GDGCHC	2 cut(s)	711, 1173
SfaNI	GCATC	1 cut(s)	186
SfiI	GGCCNNNNNGGCC	1 cut(s)	464
SinI	GGWCC	2 cut(s)	334, 376
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	4 cut(s)	221, 679, 920, 1004
SmoI	CTYRAG	4 cut(s)	221, 679, 920, 1004
SnaBI	TACGTA	1 cut(s)	1068
Sse9I	AATT	2 cut(s)	229, 1072
StyD4I	CCNGG	3 cut(s)	453, 462, 885
StyI	CCWWGG	2 cut(s)	150, 330
TaaI	ACNGT	2 cut(s)	625, 955
TaiI	ACGT	4 cut(s)	351, 558, 852, 1070
TaqI	TCGA	9 cut(s)	318, 369, 471, 480, 531, 660, 693, 816, 863
TasI	AATT	2 cut(s)	229, 1072
TatI	WGTACW	2 cut(s)	618, 1089
TauI	GCSGC	4 cut(s)	404, 429, 569, 1064
Tru1I	TTAA	2 cut(s)	558, 978
Tru9I	TTAA	2 cut(s)	558, 978
TscAI	CASTG	2 cut(s)	628, 810
TseFI	GTSAC	1 cut(s)	850
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	850
TspDTI	ATGAA	2 cut(s)	863, 1154
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	628, 810
Tth111I	GACNNNGTC	1 cut(s)	323
VneI	GTGCAC	1 cut(s)	1169
VpaK11BI	GGWCC	2 cut(s)	334, 376
XmnI	GAANNNNTTC	1 cut(s)	812
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.