Rmu_sc0003226.1_g000094

Pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
Physical Location & Seq
Forward (+)
327330 .. 328850
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003226.1_g000094.1.cds

Sequence Viewer

Length: 1521 bp
atggcacaatgtcgcttctcctcctctcttcttcgtcttctccgttcagctcgccggttctcctcactcccgaacccaacaacaacccaaaacgacgccgaactggtatcaaacatcctcctccaccaccacaaccccttccacgccatggagtcctctctccagctccacggcatcactctctcccccgacctcctccaccacactctcctccgcctcaagcacaattccaaaatcgccctcgccctcttccactacgccaagtccctccccccccccccgcccctcacctcccacgccttccacctcctcatcgacatcgtcgccaaggtccgccagtacgacgtcgcttggcagctcatcctcgaaatggaccgccacaacctcacccccaccgccgccaccttcctcatcctcatccgccgcctcatcgcctccggcctcacccgccaggccgtccgggccttcgacgacatcgagaccttcgtcctgacccgccccaccgcccaagacttctgcttcttactcgacaccctctgtaaatacggctacgttaagctcgcggctgaagttttcaacaaaaggaagcatgactatgtggccgatgtgaaaatgtacactgttctggtttacgggtggtgtaagatcggccgtttcgatatggcggagaggttcttgagggatatgatcgagcgaggtgttgagcccaatgtggttacttacaatgtgtttctggatgggatttgtaggaaggcgagtttgcaccctcaggacaggtttgagagaaccataagaaatgcactgaaggtgttcgacgaaatgtccagcagaggcattgagccggacgtgacgagtttttcgatccttcttcatgtttatagccgggcgcataagcccgagttgtcgcttgataagctcaaggaaatgagggagagggggatttgccccaccgtggcgacttacacttcagttgttaagtgtctttgctcttgcgggaggcttgaggaagcggaggagttgcttggtgagatggtgaggaatggggttagtccgtctgtggctacgtataattgttttttcaaagagtataaggggaggaaggactcggaaagcgcttcgaagttgtataggaagatgaaggaggatagattgtttgcgccgagtgtgcacacttataatatattggtggggatgtttttgcagttgaatcgagtggagattgtgagagagatatgggatgacatgaaagagagcggggcggggccggatttggattcgtatacgatgttgattcatgggctatgtgagaagcagaagtggagagaggcgtgccagttttttgtggagatgatagagaaggggcttcttcctcagaaagttacttttgagacgctttacagagggttaatacagtctgatatgttgagaacttggagaagattgaagaagaagctcgatgaagagtctgttacttttggattggagtttcaaaattatcaccttaagccatacaggagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

506

Amino Acids

58.65

Weight (kDa)

9.03

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1176
AatII GACGTC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 148
AccBSI CCGCTC 1 cut(s) 1254
AccI GTMKAC 1 cut(s) 1280
AccII CGCG 1 cut(s) 563
AclWI GGATC 1 cut(s) 856
AcoI YGGCCR 2 cut(s) 600, 649
AcuI CTGAAG 3 cut(s) 588, 824, 951
AcyI GRCGYC 2 cut(s) 96, 345
AfaI GTAC 2 cut(s) 341, 617
AfeI AGCGCT 1 cut(s) 1114
AfiI CCNNNNNNNGG 3 cut(s) 148, 370, 952
AflII CTTAAG 1 cut(s) 1502
AgsI TTSAA 5 cut(s) 577, 1081, 1207, 1444, 1490
AhdI GACNNNNNGTC 1 cut(s) 820
AjiI CACGTC 1 cut(s) 847
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 6 cut(s) 50, 166, 358, 559, 916, 1453
AluI AGCT 6 cut(s) 50, 166, 358, 559, 916, 1453
Alw21I GWGCWC 1 cut(s) 1170
Alw26I GTCTC 2 cut(s) 473, 1382
Alw44I GTGCAC 1 cut(s) 1166
AlwI GGATC 1 cut(s) 856
Ama87I CYCGRG 1 cut(s) 896
Aor51HI AGCGCT 1 cut(s) 1114
AoxI GGCC 6 cut(s) 439, 453, 462, 600, 649, 1262
ApaLI GTGCAC 1 cut(s) 1166
ApeKI GCWGC 1 cut(s) 355
ArsI GACNNNNNNTTYG 2 cut(s) 841, 873
Asp700I GAANNNNTTC 1 cut(s) 809
AspLEI GCGC 3 cut(s) 889, 1115, 1159
AspS9I GGNCC 4 cut(s) 331, 373, 462, 1262
AsuC2I CCSGG 2 cut(s) 461, 884
AsuHPI GGTGA 6 cut(s) 280, 379, 436, 1037, 1045, 1490
AsuII TTCGAA 1 cut(s) 1118
AvaI CYCGRG 1 cut(s) 896
AvaII GGWCC 2 cut(s) 331, 373
AxyI CCTNAGG 1 cut(s) 768
BaeGI GKGCMC 1 cut(s) 1170
BanII GRGCYC 1 cut(s) 708
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 1170
BbvI GCAGC 1 cut(s) 367
BccI CCATC 2 cut(s) 731, 1024
BceAI ACGGC 4 cut(s) 187, 440, 562, 636
BcgI CGANNNNNNTGC 2 cut(s) 1190, 1224
BciT130I CCWGG 1 cut(s) 452
BcnI CCSGG 2 cut(s) 461, 884
BcoDI GTCTC 2 cut(s) 473, 1382
BfoI RGCGCY 1 cut(s) 1116
BfrI CTTAAG 1 cut(s) 1502
BglI GCCNNNNNGGC 1 cut(s) 461
BisI GCNGC 4 cut(s) 356, 399, 424, 564
BlsI GCNGC 4 cut(s) 357, 400, 425, 565
Bme1390I CCNGG 3 cut(s) 452, 461, 884
Bme18I GGWCC 2 cut(s) 331, 373
BmeRI GACNNNNNGTC 1 cut(s) 820
BmeT110I CYCGRG 1 cut(s) 896
BmgBI CACGTC 1 cut(s) 847
BmgT120I GGNCC 4 cut(s) 331, 373, 462, 1262
BmiI GGNNCC 1 cut(s) 1263
BmrFI CCNGG 3 cut(s) 452, 461, 884
BmsI GCATC 1 cut(s) 183
BoxI GACNNNNGTC 1 cut(s) 485
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 1118
BpuEI CTTGAG 4 cut(s) 203, 697, 902, 1022
BpuMI CCSGG 2 cut(s) 461, 884
BsaAI YACGTR 1 cut(s) 1065
BsaHI GRCGYC 2 cut(s) 96, 345
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 4 cut(s) 147, 169, 327, 951
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 370, 952
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 3 cut(s) 108, 337, 1333
Bse21I CCTNAGG 1 cut(s) 768
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 4 cut(s) 147, 169, 327, 951
BseGI GGATG 7 cut(s) 114, 360, 411, 417, 742, 1197, 1243
BseLI CCNNNNNNNGG 3 cut(s) 148, 370, 952
BseMII CTCAG 2 cut(s) 782, 1385
BseNI ACTGG 3 cut(s) 108, 337, 1333
BseRI GAGGAG 8 cut(s) 10, 13, 52, 110, 185, 200, 299, 1028
BseSI GKGCMC 1 cut(s) 1170
BseX3I CGGCCG 1 cut(s) 649
BseXI GCAGC 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 563
Bsh1285I CGRYCG 1 cut(s) 652
BshFI GGCC 6 cut(s) 441, 455, 464, 602, 651, 1264
BsiEI CGRYCG 1 cut(s) 652
BsiHKAI GWGCWC 1 cut(s) 1170
BsiHKCI CYCGRG 1 cut(s) 896
BsiSI CCGG 6 cut(s) 55, 438, 460, 842, 883, 1265
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 3 cut(s) 148, 370, 952
BsmAI GTCTC 2 cut(s) 473, 1382
BsmBI CGTCTC 1 cut(s) 1382
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 6 cut(s) 441, 455, 464, 602, 651, 1264
Bso31I GGTCTC 1 cut(s) 473
BsoBI CYCGRG 1 cut(s) 896
Bsp119I TTCGAA 1 cut(s) 1118
Bsp1286I GDGCHC 2 cut(s) 708, 1170
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 3 cut(s) 645, 687, 861
Bsp19I CCATGG 1 cut(s) 147
BspANI GGCC 6 cut(s) 441, 455, 464, 602, 651, 1264
BspCNI CTCAG 2 cut(s) 781, 1384
BspFNI CGCG 1 cut(s) 563
BspLI GGNNCC 1 cut(s) 1263
BspPI GGATC 1 cut(s) 856
BspT104I TTCGAA 1 cut(s) 1118
BspTI CTTAAG 1 cut(s) 1502
BspTNI GGTCTC 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 1254
BsrFI RCCGGY 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 615
BsrI ACTGG 3 cut(s) 108, 337, 1333
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 4 cut(s) 147, 169, 327, 951
BssMI GATC 3 cut(s) 645, 687, 861
BssNAI GTATAC 1 cut(s) 1281
BssNI GRCGYC 2 cut(s) 96, 345
BssT1I CCWWGG 2 cut(s) 147, 327
Bst1107I GTATAC 1 cut(s) 1281
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 3 cut(s) 622, 952, 1413
Bst6I CTCTTC 3 cut(s) 33, 254, 1455
BstACI GRCGYC 2 cut(s) 96, 345
BstAFI CTTAAG 1 cut(s) 1502
BstAUI TGTACA 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 1065
BstBI TTCGAA 1 cut(s) 1118
BstC8I GCNNGC 3 cut(s) 52, 561, 1330
BstDEI CTNAG 2 cut(s) 768, 1371
BstDSI CCRYGG 3 cut(s) 147, 169, 951
BstF5I GGATG 7 cut(s) 114, 360, 411, 417, 742, 1197, 1243
BstFNI CGCG 1 cut(s) 563
BstH2I RGCGCY 1 cut(s) 1116
BstHHI GCGC 3 cut(s) 889, 1115, 1159
BstKTI GATC 3 cut(s) 648, 690, 864
BstMAI GTCTC 2 cut(s) 473, 1382
BstMBI GATC 3 cut(s) 645, 687, 861
BstMCI CGRYCG 1 cut(s) 652
BstMWI GCNNNNNNNGC 4 cut(s) 447, 461, 913, 1165
BstNI CCWGG 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 485
BstSCI CCNGG 3 cut(s) 450, 459, 882
BstSLI GKGCMC 1 cut(s) 1170
BstSNI TACGTA 1 cut(s) 1065
BstUI CGCG 1 cut(s) 563
BstV1I GCAGC 1 cut(s) 367
BstV2I GAAGAC 1 cut(s) 29
BstZ17I GTATAC 1 cut(s) 1281
BstZI CGGCCG 1 cut(s) 649
Bsu36I CCTNAGG 1 cut(s) 768
BsuRI GGCC 6 cut(s) 441, 455, 464, 602, 651, 1264
BtgI CCRYGG 3 cut(s) 147, 169, 951
BtgZI GCGATG 1 cut(s) 415
BtrI CACGTC 1 cut(s) 847
BtsCI GGATG 7 cut(s) 114, 360, 411, 417, 742, 1197, 1243
BtsIMutI CAGTG 2 cut(s) 618, 800
Cac8I GCNNGC 3 cut(s) 52, 561, 1330
CfoI GCGC 3 cut(s) 889, 1115, 1159
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 4 cut(s) 331, 373, 462, 1262
CseI GACGC 2 cut(s) 104, 1399
Csp6I GTAC 2 cut(s) 340, 616
CviAII CATG 5 cut(s) 148, 590, 872, 1243, 1295
CviQI GTAC 2 cut(s) 340, 616
DdeI CTNAG 2 cut(s) 768, 1371
DpnI GATC 3 cut(s) 647, 689, 863
DpnII GATC 3 cut(s) 645, 687, 861
DriI GACNNNNNGTC 1 cut(s) 820
EaeI YGGCCR 2 cut(s) 600, 649
EagI CGGCCG 1 cut(s) 649
Eam1104I CTCTTC 3 cut(s) 33, 254, 1455
Eam1105I GACNNNNNGTC 1 cut(s) 820
EarI CTCTTC 3 cut(s) 33, 254, 1455
EciI GGCGGA 4 cut(s) 203, 323, 410, 680
EclXI CGGCCG 1 cut(s) 649
Eco105I TACGTA 1 cut(s) 1065
Eco130I CCWWGG 2 cut(s) 147, 327
Eco24I GRGCYC 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 473
Eco47I GGWCC 2 cut(s) 331, 373
Eco47III AGCGCT 1 cut(s) 1114
Eco52I CGGCCG 1 cut(s) 649
Eco57I CTGAAG 3 cut(s) 588, 824, 951
Eco81I CCTNAGG 1 cut(s) 768
Eco88I CYCGRG 1 cut(s) 896
EcoRII CCWGG 1 cut(s) 450
EcoT14I CCWWGG 2 cut(s) 147, 327
EcoT38I GRGCYC 1 cut(s) 708
ErhI CCWWGG 2 cut(s) 147, 327
Esp3I CGTCTC 1 cut(s) 1382
FaeI CATG 5 cut(s) 151, 593, 875, 1246, 1298
FaqI GGGAC 1 cut(s) 250
FatI CATG 5 cut(s) 147, 589, 871, 1242, 1294
FauI CCCGC 6 cut(s) 288, 455, 503, 986, 1247, 1252
FblI GTMKAC 1 cut(s) 1280
Fnu4HI GCNGC 4 cut(s) 356, 399, 424, 564
FokI GGATG 7 cut(s) 101, 347, 398, 404, 749, 1204, 1250
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 4 cut(s) 356, 399, 424, 564
GlaI GCGC 3 cut(s) 888, 1114, 1158
GluI GCNGC 4 cut(s) 356, 399, 424, 564
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 1116
HaeIII GGCC 6 cut(s) 441, 455, 464, 602, 651, 1264
HapII CCGG 6 cut(s) 55, 438, 460, 842, 883, 1265
HgaI GACGC 2 cut(s) 104, 1399
HhaI GCGC 3 cut(s) 889, 1115, 1159
Hin1I GRCGYC 2 cut(s) 96, 345
Hin1II CATG 5 cut(s) 151, 593, 875, 1246, 1298
Hin6I GCGC 3 cut(s) 887, 1113, 1157
HinP1I GCGC 3 cut(s) 887, 1113, 1157
HinfI GANTC 6 cut(s) 152, 1103, 1207, 1274, 1291, 1463
HpaII CCGG 6 cut(s) 55, 438, 460, 842, 883, 1265
HphI GGTGA 6 cut(s) 280, 379, 436, 1037, 1045, 1490
Hpy166II GTNNAC 4 cut(s) 618, 631, 1168, 1281
Hpy188I TCNGA 3 cut(s) 1108, 1374, 1417
Hpy188III TCNNGA 6 cut(s) 70, 478, 490, 676, 734, 770
Hpy8I GTNNAC 4 cut(s) 618, 631, 1168, 1281
Hpy99I CGWCG 6 cut(s) 98, 326, 347, 350, 473, 818
HpyCH4III ACNGT 3 cut(s) 622, 952, 1413
HpyCH4IV ACGT 4 cut(s) 345, 552, 846, 1064
HpyCH4V TGCA 4 cut(s) 763, 800, 1168, 1201
HpyF10VI GCNNNNNNNGC 4 cut(s) 447, 461, 913, 1165
HpyF3I CTNAG 2 cut(s) 768, 1371
HpySE526I ACGT 4 cut(s) 345, 552, 846, 1064
Hsp92I GRCGYC 2 cut(s) 96, 345
Hsp92II CATG 5 cut(s) 151, 593, 875, 1246, 1298
HspAI GCGC 3 cut(s) 887, 1113, 1157
Kzo9I GATC 3 cut(s) 645, 687, 861
LmnI GCTCC 1 cut(s) 171
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 1 cut(s) 183
MaeII ACGT 4 cut(s) 345, 552, 846, 1064
MaeIII GTNAC 4 cut(s) 715, 847, 1378, 1468
MalI GATC 3 cut(s) 647, 689, 863
MbiI CCGCTC 1 cut(s) 1254
MboI GATC 3 cut(s) 645, 687, 861
MhlI GDGCHC 2 cut(s) 708, 1170
MluCI AATT 3 cut(s) 226, 1069, 1492
MlyI GAGTC 3 cut(s) 161, 1097, 1472
MroXI GAANNNNTTC 1 cut(s) 809
MseI TTAA 4 cut(s) 555, 975, 1406, 1503
MslI CAYNNNNRTG 1 cut(s) 594
MspCI CTTAAG 1 cut(s) 1502
MspI CCGG 6 cut(s) 55, 438, 460, 842, 883, 1265
MspR9I CCNGG 3 cut(s) 452, 461, 884
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 1 cut(s) 563
MwoI GCNNNNNNNGC 4 cut(s) 447, 461, 913, 1165
NciI CCSGG 2 cut(s) 461, 884
NcoI CCATGG 1 cut(s) 147
NdeII GATC 3 cut(s) 645, 687, 861
NlaIII CATG 5 cut(s) 151, 593, 875, 1246, 1298
NlaIV GGNNCC 1 cut(s) 1263
NmeAIII GCCGAG 1 cut(s) 1185
NmuCI GTSAC 1 cut(s) 847
NspV TTCGAA 1 cut(s) 1118
PcsI WCGNNNNNNNCGW 5 cut(s) 40, 474, 483, 654, 857
PdmI GAANNNNTTC 1 cut(s) 809
PfeI GAWTC 3 cut(s) 1207, 1274, 1291
PflFI GACNNNGTC 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 4 cut(s) 357, 400, 425, 565
PleI GAGTC 3 cut(s) 160, 1097, 1471
PpsI GAGTC 3 cut(s) 160, 1097, 1471
Ppu21I YACGTR 1 cut(s) 1065
PshAI GACNNNNGTC 1 cut(s) 485
PsiI TTATAA 1 cut(s) 1176
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 1263
PspPI GGNCC 4 cut(s) 331, 373, 462, 1262
PsyI GACNNNGTC 1 cut(s) 320
RsaI GTAC 2 cut(s) 341, 617
RsaNI GTAC 2 cut(s) 340, 616
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 4 cut(s) 555, 975, 1406, 1503
SatI GCNGC 4 cut(s) 356, 399, 424, 564
Sau3AI GATC 3 cut(s) 645, 687, 861
Sau96I GGNCC 4 cut(s) 331, 373, 462, 1262
SchI GAGTC 3 cut(s) 161, 1097, 1472
ScrFI CCNGG 3 cut(s) 452, 461, 884
SduI GDGCHC 2 cut(s) 708, 1170
SfaNI GCATC 1 cut(s) 183
SfiI GGCCNNNNNGGCC 1 cut(s) 461
SfuI TTCGAA 1 cut(s) 1118
SinI GGWCC 2 cut(s) 331, 373
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 5 cut(s) 218, 676, 917, 1001, 1502
SmoI CTYRAG 5 cut(s) 218, 676, 917, 1001, 1502
SnaBI TACGTA 1 cut(s) 1065
Sse9I AATT 3 cut(s) 226, 1069, 1492
StyD4I CCNGG 3 cut(s) 450, 459, 882
StyI CCWWGG 2 cut(s) 147, 327
TaaI ACNGT 3 cut(s) 622, 952, 1413
TaiI ACGT 4 cut(s) 348, 555, 849, 1067
TasI AATT 3 cut(s) 226, 1069, 1492
TatI WGTACW 1 cut(s) 615
TauI GCSGC 3 cut(s) 401, 426, 566
TfiI GAWTC 3 cut(s) 1207, 1274, 1291
Tru1I TTAA 4 cut(s) 555, 975, 1406, 1503
Tru9I TTAA 4 cut(s) 555, 975, 1406, 1503
TscAI CASTG 2 cut(s) 625, 807
TseFI GTSAC 1 cut(s) 847
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 847
TspDTI ATGAA 5 cut(s) 860, 1151, 1259, 1283, 1473
TspGWI ACGGA 2 cut(s) 32, 1041
TspRI CASTG 2 cut(s) 625, 807
Tth111I GACNNNGTC 1 cut(s) 320
Van91I CCANNNNNTGG 1 cut(s) 148
Vha464I CTTAAG 1 cut(s) 1502
VneI GTGCAC 1 cut(s) 1166
VpaK11BI GGWCC 2 cut(s) 331, 373
XmiI GTMKAC 1 cut(s) 1280
XmnI GAANNNNTTC 1 cut(s) 809
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.