Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Reverse (-)

6017166 .. 6019724

Gene Structure 2559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAGGGTTTAGTGTCTACTGGTTGGAAAGGTCCCGTCAAGTTCAGGATGCCCACTGCTGAAAACTTGGTACCTATTCGATTGGACATTCAATTCGAAGGTCAGCGTTACAAAGATGCTTTCACTTGGAACCCTTCAGACCCGGATAATGAAGTCGTTATCTTTGCCAAAAGAACTGTTAAAGACTTGAAACTTCCCTATGCATTTGTCACTCAGATTGCCCAATCTATTCAGTCTCAGCTCTCAGACTTTCGGGCTTATGAAGGACAAGACATGTACACTGGTGAAAAAATCATACCAATTAAGCTTGATCTCCGAGTTAACCATACTCTCATCAAGGATCAGTTCTTATGGGACCTAAACAATTTTGAGAGTGATCCTGAGGAATTTGCAAGAACCTTGTGCAAGGATTTAGGTGTTGAAGACCCTGAAGTTGGACCTGCTGTTGCCTTTGCAATAAGGGAACAACTTTACGAGATTGCAATTCAAAGTGTGGCTTCAGCTAGGGAGAGTAGATTAAGCAAGAAAGGCCGCAGAGGATCTGATCATGGTTCAGCGAGCAAGGCAAGTGGCCTGTCAATGGACTTAATGAAGTTATTCAGTTTTAAGTCCAGTGTAGTTCGGAAAAGGAAAGACTTGGATGTTTATGAACCAGTTGTGGATCTGCTAACAAGTGAGGAAGTTGATGCGCTTGAAGCCAGGGAAGAGAGACATGCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

240

Amino Acids

27.29

Weight (kDa)

5.78

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	20 - 85	6.7e-16	SNF5 / SMARCB1 / INI1
SNF5	PF04855	99 - 227	5.4e-12	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	448
Acc65I	GGTACC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	1 cut(s)	532
AclWI	GGATC	4 cut(s)	348, 371, 547, 669
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	3 cut(s)	120, 450, 483
AfaI	GTAC	2 cut(s)	72, 278
AfiI	CCNNNNNNNGG	2 cut(s)	434, 580
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	5 cut(s)	92, 190, 422, 488, 695
AjnI	CCWGG	1 cut(s)	698
AluBI	AGCT	3 cut(s)	241, 307, 503
AluI	AGCT	3 cut(s)	241, 307, 503
Alw26I	GTCTC	2 cut(s)	240, 703
AlwI	GGATC	4 cut(s)	348, 371, 547, 669
AoxI	GGCC	2 cut(s)	529, 571
ApoI	RAATTY	1 cut(s)	386
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
Asp700I	GAANNNNTTC	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	3 cut(s)	32, 355, 437
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	296
AsuII	TTCGAA	1 cut(s)	96
AvaII	GGWCC	3 cut(s)	32, 355, 437
AxyI	CCTNAGG	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	700
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	240, 703
BfaI	CTAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	1 cut(s)	532
BlsI	GCNGC	1 cut(s)	533
Bme1390I	CCNGG	2 cut(s)	143, 700
Bme18I	GGWCC	3 cut(s)	32, 355, 437
BmgT120I	GGNCC	3 cut(s)	32, 355, 437
BmiI	GGNNCC	4 cut(s)	34, 72, 131, 356
BmrFI	CCNGG	2 cut(s)	143, 700
BmsI	GCATC	3 cut(s)	39, 106, 676
BpiI	GAAGAC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 580
Bse1I	ACTGG	4 cut(s)	25, 286, 612, 653
Bse21I	CCTNAGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	700
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	2 cut(s)	54, 646
BseLI	CCNNNNNNNGG	2 cut(s)	434, 580
BseMII	CTCAG	4 cut(s)	227, 251, 258, 372
BseNI	ACTGG	4 cut(s)	25, 286, 612, 653
BshFI	GGCC	2 cut(s)	531, 573
BshNI	GGYRCC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	18, 368
BslI	CCNNNNNNNGG	2 cut(s)	434, 580
BsmAI	GTCTC	2 cut(s)	240, 703
BsmFI	GGGAC	2 cut(s)	18, 368
BsnI	GGCC	2 cut(s)	531, 573
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	6 cut(s)	310, 340, 376, 539, 544, 661
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	2 cut(s)	531, 573
BspCNI	CTCAG	4 cut(s)	226, 250, 257, 373
BspLI	GGNNCC	4 cut(s)	34, 72, 131, 356
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	4 cut(s)	348, 371, 547, 669
BspT104I	TTCGAA	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	4 cut(s)	25, 286, 612, 653
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	6 cut(s)	310, 340, 376, 539, 544, 661
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	699
BstAUI	TGTACA	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	4 cut(s)	213, 237, 244, 381
BstF5I	GGATG	2 cut(s)	54, 646
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	6 cut(s)	313, 343, 379, 542, 547, 664
BstMAI	GTCTC	2 cut(s)	240, 703
BstMBI	GATC	6 cut(s)	310, 340, 376, 539, 544, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	528, 563, 695
BstNI	CCWGG	1 cut(s)	700
BstNSI	RCATGY	2 cut(s)	277, 716
BstSCI	CCNGG	2 cut(s)	141, 698
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	2 cut(s)	539, 661
BstYI	RGATCY	2 cut(s)	539, 661
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	531, 573
BtsCI	GGATG	2 cut(s)	54, 646
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	54, 279, 619
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	559
CfoI	GCGC	1 cut(s)	691
Cfr13I	GGNCC	3 cut(s)	32, 355, 437
Csp6I	GTAC	2 cut(s)	71, 277
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	3 cut(s)	274, 548, 713
CviJI	RGCY	8 cut(s)	241, 257, 307, 497, 503, 531, 573, 698
CviKI_1	RGCY	8 cut(s)	241, 257, 307, 497, 503, 531, 573, 698
CviQI	GTAC	2 cut(s)	71, 277
DdeI	CTNAG	4 cut(s)	213, 237, 244, 381
DpnI	GATC	6 cut(s)	312, 342, 378, 541, 546, 663
DpnII	GATC	6 cut(s)	310, 340, 376, 539, 544, 661
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Eco47I	GGWCC	3 cut(s)	32, 355, 437
Eco57I	CTGAAG	3 cut(s)	120, 450, 483
Eco81I	CCTNAGG	1 cut(s)	381
EcoO109I	RGGNCCY	2 cut(s)	32, 355
EcoRII	CCWGG	1 cut(s)	698
EcoT22I	ATGCAT	1 cut(s)	205
FaeI	CATG	3 cut(s)	277, 551, 716
FaiI	YATR	9 cut(s)	201, 261, 275, 296, 327, 352, 549, 648, 714
FalI	AAGNNNNNCTT	2 cut(s)	481, 513
FaqI	GGGAC	2 cut(s)	18, 368
FatI	CATG	3 cut(s)	273, 547, 712
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	532
FokI	GGATG	2 cut(s)	61, 653
Fsp4HI	GCNGC	1 cut(s)	532
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	1 cut(s)	532
HaeIII	GGCC	2 cut(s)	531, 573
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	1 cut(s)	691
Hin1II	CATG	3 cut(s)	277, 551, 716
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	305
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	18, 279, 322
Hpy188I	TCNGA	6 cut(s)	139, 216, 247, 317, 544, 624
Hpy188III	TCNNGA	2 cut(s)	46, 380
Hpy8I	GTNNAC	3 cut(s)	18, 279, 322
HpyAV	CCTTC	3 cut(s)	92, 144, 257
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	6 cut(s)	203, 392, 405, 455, 482, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	528, 563, 695
HpyF3I	CTNAG	4 cut(s)	213, 237, 244, 381
Hsp92II	CATG	3 cut(s)	277, 551, 716
HspAI	GCGC	1 cut(s)	689
KpnI	GGTACC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	544
KspAI	GTTAAC	1 cut(s)	322
Kzo9I	GATC	6 cut(s)	310, 340, 376, 539, 544, 661
LweI	GCATC	3 cut(s)	39, 106, 676
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	107, 208
MalI	GATC	6 cut(s)	312, 342, 378, 541, 546, 663
MboI	GATC	6 cut(s)	310, 340, 376, 539, 544, 661
MboII	GAAGA	2 cut(s)	434, 716
MflI	RGATCY	2 cut(s)	539, 661
MluCI	AATT	5 cut(s)	92, 300, 364, 386, 483
MmeI	TCCRAC	2 cut(s)	5, 415
MnlI	CCTC	3 cut(s)	376, 530, 670
Mph1103I	ATGCAT	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	6 cut(s)	180, 303, 321, 518, 587, 606
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	143, 700
MvaI	CCWGG	1 cut(s)	700
MwoI	GCNNNNNNNGC	3 cut(s)	528, 563, 695
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	6 cut(s)	310, 340, 376, 539, 544, 661
NlaIII	CATG	3 cut(s)	277, 551, 716
NlaIV	GGNNCC	4 cut(s)	34, 72, 131, 356
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	2 cut(s)	277, 716
NspV	TTCGAA	1 cut(s)	96
PciI	ACATGT	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	596
PkrI	GCNGC	1 cut(s)	533
PpuMI	RGGWCCY	2 cut(s)	32, 355
PscI	ACATGT	1 cut(s)	273
Psp5II	RGGWCCY	2 cut(s)	32, 355
Psp6I	CCWGG	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	4 cut(s)	34, 72, 131, 356
PspPI	GGNCC	3 cut(s)	32, 355, 437
PspPPI	RGGWCCY	2 cut(s)	32, 355
PsuI	RGATCY	2 cut(s)	539, 661
RsaI	GTAC	2 cut(s)	72, 278
RsaNI	GTAC	2 cut(s)	71, 277
SaqAI	TTAA	6 cut(s)	180, 303, 321, 518, 587, 606
SatI	GCNGC	1 cut(s)	532
Sau3AI	GATC	6 cut(s)	310, 340, 376, 539, 544, 661
Sau96I	GGNCC	3 cut(s)	32, 355, 437
ScrFI	CCNGG	2 cut(s)	143, 700
SfaNI	GCATC	3 cut(s)	39, 106, 676
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	3 cut(s)	32, 355, 437
Sse9I	AATT	5 cut(s)	92, 300, 364, 386, 483
SsiI	CCGC	1 cut(s)	532
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	141, 698
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	79, 96
TasI	AATT	5 cut(s)	92, 300, 364, 386, 483
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	534
Tru1I	TTAA	6 cut(s)	180, 303, 321, 518, 587, 606
Tru9I	TTAA	6 cut(s)	180, 303, 321, 518, 587, 606
TscAI	CASTG	3 cut(s)	61, 286, 619
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	5 cut(s)	17, 165, 276, 605, 663
TspRI	CASTG	3 cut(s)	61, 286, 619
VpaK11BI	GGWCC	3 cut(s)	32, 355, 437
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	2 cut(s)	277, 716
XmiI	GTMKAC	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.