Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Reverse (-)

55968717 .. 55974266

Gene Structure 5550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG299500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGATTACGAGCTGCTGCACATTCATCATCTTCTTCCATAGACAGCAGCAACCATCCTGACCTTGATGGTCTTCTTCCTAAGCCTTCTGGATCGTCTTCTTCTTCGTCTCTCTCTCACAAAATCAATGGTGGTTCTAATTCTCGTAACAGTCGCAGAAGCACTCATACCAGAACAGATTTGAGCACTGATCTCAGACTTGGCCTGAGCATATCACCATCTCATCACTCTGACTTGTCTTCCACTACTTCAAGCCCAAGTGGTAATAATGGCTGGATTATAACTATCAACTATGTTATGTGGTATCAGAGCCAAGTTGACATTTTTCGATCATTCCAAGGCCAAGATATGTACACCGGCGAGAGGATTGTTCCGATTAAGCTTGATCTCCGTGTAAACCATACTCTCATTAGGGACCAGTTTTTATGGGACTTGAACAACTTTGAAAGTGATCCCGAGGAGTTTGCTAAAACCTTGTGTGCAGATTTAGGTGTTCATGACCCTGAAGTTGGTCCTGCAATTGCTTTTGCAATTAGAGAGCAGCTGTATGAGATTGCAGTCCAAAATGTAGCTTCAGCAAGAGAAAGCAGACTAAGCAAAAAAGGGCGCCGAGGGAGTGATCATACTCCACTCAGTAAAGCTAGTAGTACTGGATTGGACCTGGTCAAGTCATTTGGTCACAGATCTACTGTCATTCGGAAAAGAAAGGAGTGGGATGTGTATGAACCCATTGTTGATCTTCTATCTAGTGAAGAAGTCGATGCCCTTGAAGCAAAAGAAGAAAGGAACGCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

265

Amino Acids

29.32

Weight (kDa)

6.36

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	124 - 265	5.1e-18	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	606
AclWI	GGATC	2 cut(s)	100, 446
AcuI	CTGAAG	2 cut(s)	525, 558
AcyI	GRCGYC	1 cut(s)	607
AfaI	GTAC	2 cut(s)	353, 649
AfiI	CCNNNNNNNGG	2 cut(s)	363, 509
AgsI	TTSAA	4 cut(s)	252, 436, 446, 770
AjnI	CCWGG	1 cut(s)	660
AluBI	AGCT	5 cut(s)	14, 382, 544, 572, 641
AluI	AGCT	5 cut(s)	14, 382, 544, 572, 641
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	100, 446
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	202, 340
ApeKI	GCWGC	4 cut(s)	14, 17, 48, 541
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	3 cut(s)	415, 512, 658
AsuHPI	GGTGA	1 cut(s)	207
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	3 cut(s)	415, 512, 658
BanI	GGYRCC	1 cut(s)	606
BarI	GAAGNNNNNNTAC	2 cut(s)	151, 183
BbsI	GAAGAC	3 cut(s)	65, 90, 231
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	3 cut(s)	4, 60, 553
BccI	CCATC	3 cut(s)	62, 63, 226
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	1 cut(s)	662
BclI	TGATCA	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	642, 747
BfoI	RGCGCY	1 cut(s)	610
BglII	AGATCT	1 cut(s)	683
BisI	GCNGC	4 cut(s)	15, 18, 49, 542
BlsI	GCNGC	4 cut(s)	16, 19, 50, 543
BmcAI	AGTACT	1 cut(s)	649
Bme1390I	CCNGG	1 cut(s)	662
Bme18I	GGWCC	3 cut(s)	415, 512, 658
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	3 cut(s)	415, 512, 658
BmiI	GGNNCC	2 cut(s)	416, 608
BmrFI	CCNGG	1 cut(s)	662
BmsI	GCATC	1 cut(s)	751
BpiI	GAAGAC	3 cut(s)	65, 90, 231
Bpu10I	CCTNAGC	2 cut(s)	81, 206
BsaHI	GRCGYC	1 cut(s)	607
BsaJI	CCNNGG	3 cut(s)	337, 456, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 509
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	2 cut(s)	418, 655
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	3 cut(s)	337, 456, 610
BseGI	GGATG	2 cut(s)	55, 721
BseLI	CCNNNNNNNGG	2 cut(s)	363, 509
BseMII	CTCAG	3 cut(s)	197, 208, 646
BseNI	ACTGG	2 cut(s)	418, 655
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	3 cut(s)	4, 60, 553
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	2 cut(s)	204, 342
BshNI	GGYRCC	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	2 cut(s)	428, 443
BslI	CCNNNNNNNGG	2 cut(s)	363, 509
BsmAI	GTCTC	1 cut(s)	114
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	428, 443
BsnI	GGCC	2 cut(s)	204, 342
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	8 cut(s)	92, 190, 329, 385, 451, 619, 683, 736
BspANI	GGCC	2 cut(s)	204, 342
BspCNI	CTCAG	3 cut(s)	198, 207, 645
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	416, 608
BspPI	GGATC	2 cut(s)	100, 446
BspT107I	GGYRCC	1 cut(s)	606
BsrFI	RCCGGY	1 cut(s)	356
BsrGI	TGTACA	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	418, 655
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	3 cut(s)	337, 456, 610
BssMI	GATC	8 cut(s)	92, 190, 329, 385, 451, 619, 683, 736
BssNI	GRCGYC	1 cut(s)	607
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	2 cut(s)	152, 691
BstACI	GRCGYC	1 cut(s)	607
BstAUI	TGTACA	1 cut(s)	351
BstDEI	CTNAG	5 cut(s)	81, 194, 206, 593, 632
BstF5I	GGATG	2 cut(s)	55, 721
BstH2I	RGCGCY	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	8 cut(s)	95, 193, 332, 388, 454, 622, 686, 739
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	8 cut(s)	92, 190, 329, 385, 451, 619, 683, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	594, 770
BstNI	CCWGG	1 cut(s)	662
BstSCI	CCNGG	1 cut(s)	660
BstV1I	GCAGC	3 cut(s)	4, 60, 553
BstV2I	GAAGAC	3 cut(s)	65, 90, 231
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	204, 342
BtsCI	GGATG	2 cut(s)	55, 721
BtsIMutI	CAGTG	1 cut(s)	186
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	609
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	3 cut(s)	415, 512, 658
CsiI	ACCWGGT	1 cut(s)	660
Csp6I	GTAC	2 cut(s)	352, 648
CviAII	CATG	1 cut(s)	497
CviQI	GTAC	2 cut(s)	352, 648
DdeI	CTNAG	5 cut(s)	81, 194, 206, 593, 632
DinI	GGCGCC	1 cut(s)	608
DpnI	GATC	8 cut(s)	94, 192, 331, 387, 453, 621, 685, 738
DpnII	GATC	8 cut(s)	92, 190, 329, 385, 451, 619, 683, 736
Eco130I	CCWWGG	1 cut(s)	337
Eco47I	GGWCC	3 cut(s)	415, 512, 658
Eco57I	CTGAAG	2 cut(s)	525, 558
Eco88I	CYCGRG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	337
EgeI	GGCGCC	1 cut(s)	608
EheI	GGCGCC	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	1 cut(s)	500
FaqI	GGGAC	2 cut(s)	428, 443
FatI	CATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	4 cut(s)	15, 18, 49, 542
FokI	GGATG	2 cut(s)	42, 728
Fsp4HI	GCNGC	4 cut(s)	15, 18, 49, 542
FspBI	CTAG	2 cut(s)	642, 747
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	4 cut(s)	15, 18, 49, 542
HaeII	RGCGCY	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	204, 342
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	609
Hin1I	GRCGYC	1 cut(s)	607
Hin1II	CATG	1 cut(s)	500
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	380
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	3 cut(s)	319, 354, 397
Hpy188I	TCNGA	5 cut(s)	197, 232, 309, 375, 699
Hpy188III	TCNNGA	4 cut(s)	59, 90, 455, 497
Hpy8I	GTNNAC	3 cut(s)	319, 354, 397
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	2 cut(s)	152, 691
HpyCH4V	TGCA	5 cut(s)	20, 482, 518, 530, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	594, 770
HpyF3I	CTNAG	5 cut(s)	81, 194, 206, 593, 632
Hsp92I	GRCGYC	1 cut(s)	607
Hsp92II	CATG	1 cut(s)	500
HspAI	GCGC	1 cut(s)	607
KasI	GGCGCC	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	8 cut(s)	92, 190, 329, 385, 451, 619, 683, 736
Lsp1109I	GCAGC	3 cut(s)	4, 60, 553
LweI	GCATC	1 cut(s)	751
MabI	ACCWGGT	1 cut(s)	660
MaeI	CTAG	2 cut(s)	642, 747
MaeIII	GTNAC	2 cut(s)	146, 677
MalI	GATC	8 cut(s)	94, 192, 331, 387, 453, 621, 685, 738
MboI	GATC	8 cut(s)	92, 190, 329, 385, 451, 619, 683, 736
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	3 cut(s)	139, 519, 531
Mly113I	GGCGCC	1 cut(s)	607
MnlI	CCTC	3 cut(s)	357, 451, 605
MseI	TTAA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	544
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	662
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	662
MwoI	GCNNNNNNNGC	2 cut(s)	594, 770
NarI	GGCGCC	1 cut(s)	607
NdeII	GATC	8 cut(s)	92, 190, 329, 385, 451, 619, 683, 736
NlaIII	CATG	1 cut(s)	500
NlaIV	GGNNCC	2 cut(s)	416, 608
NmeAIII	GCCGAG	1 cut(s)	635
NmuCI	GTSAC	1 cut(s)	677
PagI	TCATGA	1 cut(s)	496
PflFI	GACNNNGTC	1 cut(s)	662
PkrI	GCNGC	4 cut(s)	16, 19, 50, 543
PluTI	GGCGCC	1 cut(s)	610
PsiI	TTATAA	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	2 cut(s)	416, 608
PspPI	GGNCC	3 cut(s)	415, 512, 658
PsuI	RGATCY	1 cut(s)	683
PsyI	GACNNNGTC	1 cut(s)	662
PvuII	CAGCTG	1 cut(s)	544
RsaI	GTAC	2 cut(s)	353, 649
RsaNI	GTAC	2 cut(s)	352, 648
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	4 cut(s)	15, 18, 49, 542
Sau3AI	GATC	8 cut(s)	92, 190, 329, 385, 451, 619, 683, 736
Sau96I	GGNCC	3 cut(s)	415, 512, 658
ScaI	AGTACT	1 cut(s)	649
ScrFI	CCNGG	1 cut(s)	662
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	9 cut(s)	16, 66, 384, 476, 493, 546, 574, 643, 663
SexAI	ACCWGGT	1 cut(s)	660
SfaNI	GCATC	1 cut(s)	751
SfoI	GGCGCC	1 cut(s)	608
SgrAI	CRCCGGYG	1 cut(s)	356
SinI	GGWCC	3 cut(s)	415, 512, 658
Sse9I	AATT	3 cut(s)	139, 519, 531
SspDI	GGCGCC	1 cut(s)	606
SspMI	CTAG	2 cut(s)	642, 747
StyD4I	CCNGG	1 cut(s)	660
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	152, 691
TaqI	TCGA	2 cut(s)	328, 759
TasI	AATT	3 cut(s)	139, 519, 531
TatI	WGTACW	2 cut(s)	351, 647
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	4 cut(s)	14, 17, 48, 541
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	3 cut(s)	15, 485, 738
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	193
Tth111I	GACNNNGTC	1 cut(s)	662
VpaK11BI	GGWCC	3 cut(s)	415, 512, 658
XspI	CTAG	2 cut(s)	642, 747
ZrmI	AGTACT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.