Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Reverse (-)

22217062 .. 22221033

Gene Structure 3972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G208100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAAGGTCAGGCGTCGAGTTCCTACAAAGGCGCTGTCAAGTTCAGGATGCCGACAGCCCAGAATTTAGTACCGATTCGCTTGGACCTCGATGTCGATGGCCAAAAGTTTAAAGACACTTTCACTTGGAACCCATCTGACCCTGACTCAGAGATTGTGGTGTTTGCGAGAAGGACAGCAAAAGACTTGAAGCTTCCTCCGGGTTTCATTACAGTCATGGCTTCTGCCATTCAGTCACAGATTGCAGACTTTCGGTCGTTGGAAGGCCAAGATATGTACCCGGGCGAGAGGATTGTGCCAATTAAGCTTGATCTTCGAGTGAACCATACTCTTATTAGGGACCAGTTTTTGTGGGACTTGAACAACTTTGAAAGTGATCCTGAAGAGTTTGCTAAAACATTCTGCGCAGATTTAGGTATTCAAGATCCTGAAGTGGGGCCTGCAATTGCCTTTTCAATTAGGGAACAACTGTATGAGATTGCAGTTCAAAGTGTAGCATCAGCAAGAGAAAACAGAATAAGCAAAAAGGGACGCCGAGGGGCTGAGTATACTCCAGTCAGTAAAGCAGGTAGTACTGGATTGGACCTGGTGAAGTTATTCGGTCACAAATCTAGTGTTGTTCGGAAAAGGAAGGAGTGGGATGTATACGAACCCATTGTTGATCTTCTATCTAGCGAGGAAGTGGATGCCCTTCAAGCGAAAGAAGAAAGGCTTACTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

241

Amino Acids

27.02

Weight (kDa)

5.86

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc16I	TGCGCA	1 cut(s)	406
Acc36I	ACCTGC	1 cut(s)	557
AccI	GTMKAC	2 cut(s)	548, 645
AclWI	GGATC	2 cut(s)	371, 419
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	2 cut(s)	402, 450
AcyI	GRCGYC	2 cut(s)	14, 532
AfaI	GTAC	3 cut(s)	72, 278, 574
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	7 cut(s)	190, 361, 371, 422, 456, 488, 695
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	2 cut(s)	193, 307
AluI	AGCT	2 cut(s)	193, 307
AlwI	GGATC	2 cut(s)	371, 419
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	3 cut(s)	100, 265, 437
ApoI	RAATTY	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
Asp700I	GAANNNNTTC	1 cut(s)	596
AspLEI	GCGC	2 cut(s)	35, 407
AspS9I	GGNCC	4 cut(s)	85, 340, 437, 583
AsuC2I	CCSGG	3 cut(s)	201, 281, 282
AsuHPI	GGTGA	1 cut(s)	601
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	3 cut(s)	85, 340, 583
BalI	TGGCCA	1 cut(s)	102
BccI	CCATC	2 cut(s)	92, 142
BciT130I	CCWGG	1 cut(s)	587
BcnI	CCSGG	3 cut(s)	201, 281, 282
BfaI	CTAG	2 cut(s)	612, 672
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	557
BmcAI	AGTACT	1 cut(s)	574
Bme1390I	CCNGG	4 cut(s)	201, 281, 282, 587
Bme18I	GGWCC	3 cut(s)	85, 340, 583
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	280
BmgT120I	GGNCC	4 cut(s)	85, 340, 437, 583
BmiI	GGNNCC	3 cut(s)	131, 341, 438
BmrFI	CCNGG	4 cut(s)	201, 281, 282, 587
BmsI	GCATC	3 cut(s)	39, 506, 676
BpmI	CTGGAG	1 cut(s)	537
BpuMI	CCSGG	3 cut(s)	201, 281, 282
BsaHI	GRCGYC	2 cut(s)	14, 532
BsaJI	CCNNGG	2 cut(s)	280, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	3 cut(s)	343, 554, 580
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	2 cut(s)	280, 535
BseGI	GGATG	3 cut(s)	54, 646, 691
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	2 cut(s)	162, 534
BseNI	ACTGG	3 cut(s)	343, 554, 580
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	3 cut(s)	102, 267, 439
BsiEI	CGRYCG	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	200, 281
BslFI	GGGAC	3 cut(s)	353, 368, 543
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmFI	GGGAC	3 cut(s)	353, 368, 543
BsnI	GGCC	3 cut(s)	102, 267, 439
BsoBI	CYCGRG	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	310, 376, 424, 661
BspANI	GGCC	3 cut(s)	102, 267, 439
BspCNI	CTCAG	2 cut(s)	161, 535
BspLI	GGNNCC	3 cut(s)	131, 341, 438
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	2 cut(s)	371, 419
BsrI	ACTGG	3 cut(s)	343, 554, 580
BssECI	CCNNGG	2 cut(s)	280, 535
BssMI	GATC	4 cut(s)	310, 376, 424, 661
BssNAI	GTATAC	2 cut(s)	549, 646
BssNI	GRCGYC	2 cut(s)	14, 532
Bst1107I	GTATAC	2 cut(s)	549, 646
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	214, 471
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	2 cut(s)	14, 532
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	148, 543
BstF5I	GGATG	3 cut(s)	54, 646, 691
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 407
BstKTI	GATC	4 cut(s)	313, 379, 427, 664
BstMBI	GATC	4 cut(s)	310, 376, 424, 661
BstMCI	CGRYCG	1 cut(s)	257
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 695
BstNI	CCWGG	1 cut(s)	587
BstSCI	CCNGG	4 cut(s)	199, 279, 280, 585
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BstZ17I	GTATAC	2 cut(s)	549, 646
BsuRI	GGCC	3 cut(s)	102, 267, 439
BtsCI	GGATG	3 cut(s)	54, 646, 691
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	1 cut(s)	441
CfoI	GCGC	2 cut(s)	35, 407
Cfr13I	GGNCC	4 cut(s)	85, 340, 437, 583
Cfr9I	CCCGGG	1 cut(s)	280
CseI	GACGC	2 cut(s)	3, 540
CsiI	ACCWGGT	1 cut(s)	585
Csp6I	GTAC	3 cut(s)	71, 277, 573
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	9 cut(s)	59, 102, 193, 221, 267, 307, 439, 542, 712
CviKI_1	RGCY	9 cut(s)	59, 102, 193, 221, 267, 307, 439, 542, 712
CviQI	GTAC	3 cut(s)	71, 277, 573
DdeI	CTNAG	2 cut(s)	148, 543
DpnI	GATC	4 cut(s)	312, 378, 426, 663
DpnII	GATC	4 cut(s)	310, 376, 424, 661
DraI	TTTAAA	1 cut(s)	112
DrdI	GACNNNNNNGTC	1 cut(s)	92
DriI	GACNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	378
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	378
Eco47I	GGWCC	3 cut(s)	85, 340, 583
Eco57I	CTGAAG	2 cut(s)	402, 450
Eco88I	CYCGRG	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	585
FaeI	CATG	1 cut(s)	220
FaiI	YATR	6 cut(s)	218, 275, 327, 474, 549, 646
FalI	AAGNNNNNCTT	1 cut(s)	696
FaqI	GGGAC	3 cut(s)	353, 368, 543
FatI	CATG	1 cut(s)	216
FblI	GTMKAC	2 cut(s)	548, 645
FokI	GGATG	3 cut(s)	61, 653, 698
FspBI	CTAG	2 cut(s)	612, 672
FspI	TGCGCA	1 cut(s)	406
GlaI	GCGC	2 cut(s)	34, 406
GsuI	CTGGAG	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	102, 267, 439
HapII	CCGG	2 cut(s)	200, 281
HgaI	GACGC	2 cut(s)	3, 540
HhaI	GCGC	2 cut(s)	35, 407
Hin1I	GRCGYC	2 cut(s)	14, 532
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	2 cut(s)	33, 405
HinP1I	GCGC	2 cut(s)	33, 405
HindIII	AAGCTT	2 cut(s)	191, 305
HinfI	GANTC	2 cut(s)	76, 146
HpaII	CCGG	2 cut(s)	200, 281
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	3 cut(s)	322, 549, 646
Hpy188I	TCNGA	3 cut(s)	139, 151, 624
Hpy188III	TCNNGA	4 cut(s)	46, 380, 422, 428
Hpy8I	GTNNAC	3 cut(s)	322, 549, 646
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	165, 257, 625, 701
HpyCH4III	ACNGT	2 cut(s)	214, 471
HpyCH4V	TGCA	3 cut(s)	245, 443, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 695
HpyF3I	CTNAG	2 cut(s)	148, 543
Hsp92I	GRCGYC	2 cut(s)	14, 532
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	2 cut(s)	33, 405
Kzo9I	GATC	4 cut(s)	310, 376, 424, 661
LweI	GCATC	3 cut(s)	39, 506, 676
MabI	ACCWGGT	1 cut(s)	585
MaeI	CTAG	2 cut(s)	612, 672
MaeIII	GTNAC	2 cut(s)	234, 602
MalI	GATC	4 cut(s)	312, 378, 426, 663
MboI	GATC	4 cut(s)	310, 376, 424, 661
MboII	GAAGA	4 cut(s)	305, 395, 656, 716
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	1 cut(s)	424
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	64, 300, 444, 456
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	5 cut(s)	98, 207, 282, 530, 670
Mox20I	TGGCCA	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	596
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	2 cut(s)	111, 303
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	200, 281
MspR9I	CCNGG	4 cut(s)	201, 281, 282, 587
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	304, 695
NciI	CCSGG	3 cut(s)	201, 281, 282
NdeII	GATC	4 cut(s)	310, 376, 424, 661
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	3 cut(s)	131, 341, 438
NmeAIII	GCCGAG	1 cut(s)	560
NmuCI	GTSAC	2 cut(s)	234, 602
NsbI	TGCGCA	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	3 cut(s)	131, 341, 438
PspPI	GGNCC	4 cut(s)	85, 340, 437, 583
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	3 cut(s)	72, 278, 574
RsaNI	GTAC	3 cut(s)	71, 277, 573
SaqAI	TTAA	2 cut(s)	111, 303
Sau3AI	GATC	4 cut(s)	310, 376, 424, 661
Sau96I	GGNCC	4 cut(s)	85, 340, 437, 583
ScaI	AGTACT	1 cut(s)	574
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	4 cut(s)	201, 281, 282, 587
SetI	ASST	7 cut(s)	10, 90, 195, 309, 418, 571, 588
SexAI	ACCWGGT	1 cut(s)	585
SfaNI	GCATC	3 cut(s)	39, 506, 676
SinI	GGWCC	3 cut(s)	85, 340, 583
SmaI	CCCGGG	1 cut(s)	282
Sse9I	AATT	4 cut(s)	64, 300, 444, 456
SspMI	CTAG	2 cut(s)	612, 672
StyD4I	CCNGG	4 cut(s)	199, 279, 280, 585
TaaI	ACNGT	2 cut(s)	214, 471
TaqI	TCGA	4 cut(s)	17, 90, 96, 316
TaqII	GACCGA	2 cut(s)	243, 590
TasI	AATT	4 cut(s)	64, 300, 444, 456
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	111, 303
Tru9I	TTAA	2 cut(s)	111, 303
TseFI	GTSAC	2 cut(s)	234, 602
Tsp45I	GTSAC	2 cut(s)	234, 602
TspDTI	ATGAA	2 cut(s)	17, 196
TspMI	CCCGGG	1 cut(s)	280
VpaK11BI	GGWCC	3 cut(s)	85, 340, 583
XapI	RAATTY	1 cut(s)	64
XmaI	CCCGGG	1 cut(s)	280
XmiI	GTMKAC	2 cut(s)	548, 645
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	2 cut(s)	612, 672
ZrmI	AGTACT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.