Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Reverse (-)

24774926 .. 24778056

Gene Structure 3131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAAGGCCACGCTCCCAAAGGCACTGTCAAGAAGTTCAGAATGCCCACTTCCCAGAATCTAGTCCCAATTCGCGTCGATTTCGAAGTCGAAGGCCAGAGGTTCAAAGACACCTTCACTTGGAACCCATCTGACCATGATAGCGAGATTGTCAAGTTTGCGAAAGCAACAGTTAAAGACTTGAAGCTGTCTTCCAATTACGAGAAAGCCATTGTTAATTCCATTCAGAGCCAAATTGAGATTTTCCGATCGTTCCAAGGCCAAGATATGTACACCGGCGAGAGGATTGTTCCGATTAAGCTTGATCTTCGTGTGAACCATACTCTCATCAGGGACCAGTTTTTATGGGACTTGAACAACTTTGAAAGTGATCCGGAGGAGTTTGCTAAAACCTTGTGTGCAGATTTAGGTGTTCATGACCCTGAAGTTGGTCCTGCAATTGCTTTTGCTATTAGAGAACAGCTGTATGAGATTGCAGTCCAAAATGTAGCTTCAGCAAGAGAAAGCAGACTAGCCAAGAAAGGGCGTCGAGGGGGTGATCATACTCCACTCAGTAAAGCAAGTAGTACCGGATTGGACCTGGTCAAGTCATTTGGTCACAAATCTACTGTCATTCGGAAAAGAAAGGAGTGGGATGTGTATGAACCCATTGTTGATCTTCTATCTAGTGAGGAAGTTGATGCTCTCGAAGCAAAAGAAGAAAGGAATGCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

239

Amino Acids

27.05

Weight (kDa)

6.62

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	18 - 82	1.7e-15	SNF5 / SMARCB1 / INI1
SNF5	PF04855	97 - 238	5.7e-18	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	373
AclWI	GGATC	1 cut(s)	365
AcuI	CTGAAG	2 cut(s)	444, 477
AcyI	GRCGYC	1 cut(s)	526
AfaI	GTAC	2 cut(s)	272, 568
AfiI	CCNNNNNNNGG	4 cut(s)	120, 282, 428, 522
AgsI	TTSAA	4 cut(s)	106, 184, 355, 365
AjnI	CCWGG	1 cut(s)	579
AluBI	AGCT	4 cut(s)	187, 301, 463, 491
AluI	AGCT	4 cut(s)	187, 301, 463, 491
AlwI	GGATC	1 cut(s)	365
Aor13HI	TCCGGA	1 cut(s)	373
AoxI	GGCC	3 cut(s)	7, 94, 259
ArsI	GACNNNNNNTTYG	4 cut(s)	12, 44, 594, 626
AspS9I	GGNCC	3 cut(s)	334, 431, 577
AsuHPI	GGTGA	1 cut(s)	548
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	3 cut(s)	334, 431, 577
BbsI	GAAGAC	1 cut(s)	183
BccI	CCATC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	581
BclI	TGATCA	1 cut(s)	538
BfaI	CTAG	3 cut(s)	62, 512, 666
Bme1390I	CCNGG	1 cut(s)	581
Bme18I	GGWCC	3 cut(s)	334, 431, 577
BmgT120I	GGNCC	3 cut(s)	334, 431, 577
BmiI	GGNNCC	2 cut(s)	125, 335
BmrFI	CCNGG	1 cut(s)	581
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	2 cut(s)	373, 569
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 282, 428, 522
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	337
BseAI	TCCGGA	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	4 cut(s)	120, 282, 428, 522
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	9, 96, 261
BsiEI	CGRYCG	1 cut(s)	251
BsiSI	CCGG	3 cut(s)	276, 374, 570
BslFI	GGGAC	3 cut(s)	50, 347, 362
BslI	CCNNNNNNNGG	4 cut(s)	120, 282, 428, 522
BsmFI	GGGAC	3 cut(s)	50, 347, 362
BsmI	GAATGC	2 cut(s)	48, 712
BsnI	GGCC	3 cut(s)	9, 96, 261
Bsp119I	TTCGAA	1 cut(s)	84
Bsp13I	TCCGGA	1 cut(s)	373
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	5 cut(s)	248, 304, 370, 538, 655
BspANI	GGCC	3 cut(s)	9, 96, 261
BspCNI	CTCAG	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	125, 335
BspPI	GGATC	1 cut(s)	365
BspT104I	TTCGAA	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	5 cut(s)	248, 304, 370, 538, 655
BssNI	GRCGYC	1 cut(s)	526
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	3 cut(s)	28, 172, 610
BstACI	GRCGYC	1 cut(s)	526
BstAUI	TGTACA	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	551
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	5 cut(s)	251, 307, 373, 541, 658
BstMBI	GATC	5 cut(s)	248, 304, 370, 538, 655
BstMCI	CGRYCG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstNI	CCWGG	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	9, 96, 261
BtsCI	GGATG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	24
CciI	TCATGA	1 cut(s)	415
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	334, 431, 577
CseI	GACGC	2 cut(s)	64, 515
CsiI	ACCWGGT	1 cut(s)	579
Csp6I	GTAC	2 cut(s)	271, 567
CviAII	CATG	2 cut(s)	137, 416
CviQI	GTAC	2 cut(s)	271, 567
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	5 cut(s)	250, 306, 372, 540, 657
DpnII	GATC	5 cut(s)	248, 304, 370, 538, 655
Eco130I	CCWWGG	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	334, 431, 577
Eco57I	CTGAAG	2 cut(s)	444, 477
EcoRII	CCWGG	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	140, 419
FaiI	YATR	8 cut(s)	138, 269, 321, 346, 417, 468, 543, 642
FaqI	GGGAC	3 cut(s)	50, 347, 362
FatI	CATG	2 cut(s)	136, 415
FbaI	TGATCA	1 cut(s)	538
FokI	GGATG	1 cut(s)	647
FspBI	CTAG	3 cut(s)	62, 512, 666
HaeIII	GGCC	3 cut(s)	9, 96, 261
HapII	CCGG	3 cut(s)	276, 374, 570
HgaI	GACGC	2 cut(s)	64, 515
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	2 cut(s)	140, 419
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	3 cut(s)	276, 374, 570
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	2 cut(s)	273, 316
Hpy188I	TCNGA	6 cut(s)	41, 133, 228, 248, 294, 618
Hpy188III	TCNNGA	4 cut(s)	31, 374, 416, 686
Hpy8I	GTNNAC	2 cut(s)	273, 316
Hpy99I	CGWCG	2 cut(s)	80, 531
HpyAV	CCTTC	2 cut(s)	86, 124
HpyCH4III	ACNGT	3 cut(s)	28, 172, 610
HpyCH4V	TGCA	3 cut(s)	401, 437, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpyF3I	CTNAG	1 cut(s)	551
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	2 cut(s)	140, 419
Kpn2I	TCCGGA	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	248, 304, 370, 538, 655
LmnI	GCTCC	1 cut(s)	19
LweI	GCATC	1 cut(s)	670
MabI	ACCWGGT	1 cut(s)	579
MaeI	CTAG	3 cut(s)	62, 512, 666
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	5 cut(s)	250, 306, 372, 540, 657
MboI	GATC	5 cut(s)	248, 304, 370, 538, 655
MboII	GAAGA	4 cut(s)	183, 299, 650, 710
MfeI	CAATTG	1 cut(s)	438
MluCI	AATT	5 cut(s)	69, 196, 217, 234, 438
MnlI	CCTC	5 cut(s)	93, 276, 370, 524, 664
MroI	TCCGGA	1 cut(s)	373
MseI	TTAA	3 cut(s)	174, 216, 297
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	3 cut(s)	276, 374, 570
MspR9I	CCNGG	1 cut(s)	581
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	2 cut(s)	48, 712
MvaI	CCWGG	1 cut(s)	581
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	689
NdeII	GATC	5 cut(s)	248, 304, 370, 538, 655
NlaIII	CATG	2 cut(s)	140, 419
NlaIV	GGNNCC	2 cut(s)	125, 335
NmuCI	GTSAC	1 cut(s)	596
NspV	TTCGAA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	415
PctI	GAATGC	2 cut(s)	48, 712
PfeI	GAWTC	1 cut(s)	58
PflFI	GACNNNGTC	1 cut(s)	581
Ple19I	CGATCG	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	2 cut(s)	125, 335
PspPI	GGNCC	3 cut(s)	334, 431, 577
PsyI	GACNNNGTC	1 cut(s)	581
PvuI	CGATCG	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	2 cut(s)	272, 568
RsaNI	GTAC	2 cut(s)	271, 567
SaqAI	TTAA	3 cut(s)	174, 216, 297
Sau3AI	GATC	5 cut(s)	248, 304, 370, 538, 655
Sau96I	GGNCC	3 cut(s)	334, 431, 577
ScrFI	CCNGG	1 cut(s)	581
SetI	ASST	9 cut(s)	104, 116, 189, 303, 395, 412, 465, 493, 582
SexAI	ACCWGGT	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	670
SfuI	TTCGAA	1 cut(s)	84
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	3 cut(s)	334, 431, 577
Sse9I	AATT	5 cut(s)	69, 196, 217, 234, 438
SspMI	CTAG	3 cut(s)	62, 512, 666
StyD4I	CCNGG	1 cut(s)	579
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	3 cut(s)	28, 172, 610
TaqI	TCGA	5 cut(s)	78, 84, 90, 529, 687
TasI	AATT	5 cut(s)	69, 196, 217, 234, 438
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	3 cut(s)	174, 216, 297
Tru9I	TTAA	3 cut(s)	174, 216, 297
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	17, 404, 657
TspRI	CASTG	1 cut(s)	31
Tth111I	GACNNNGTC	1 cut(s)	581
VpaK11BI	GGWCC	3 cut(s)	334, 431, 577
XspI	CTAG	3 cut(s)	62, 512, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.