Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Reverse (-)

51462226 .. 51465171

Gene Structure 2946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAAGGCCACGCTCCCAAAGGCTCTGTCAAGAAGTTCAGAATGCCAACTTCCCAGAATTTGGTCCCAATTCGCGTCGATTTCGAAGTCGAAGGCCAGAGGTTCAAAGACGCCTTCACTTGGAACCCATCTGACCCTGATGGAGAGATTGCCAAGTTTGCGAAAGTAACAGTTAGAGACTTGAAGCTGTCTTCGAATTACGAGAGAGCCATTGTTAATTCCATTCAGAGCCAAGTTGATATTTTTCGATCATTCCAAGGCCAAGATATGTACACCGGCGAGAGGATTGTTCCGATTAAGCTTGACCTCCGTGTAAACCATACTCTCATTAGGGACCAGTTTTTATGGGACTTGAACAACTTTGAAAGTGATCCTGAGGAGTTTGCTAAAACCTTGTGTGCAGATTTAGGTGTTCATGACCCTGAAGTTGGTCCTGCAATTGCTTTTGCAATTAGAGAACAGCTGTATGAGATTGCAGTCCAAAATGTAGCTTCAGCAAGAGAAAGCAGACTAAGCAAGAAAGGGCGCCGAGGGAGTGATCATACTCCACTCAGTAAAGCAAGTAGTACTGGATTGGACCTGGTCAAGTCATTTGGTCACAGATCTACTGTCATTCGGAAAAGAAAGGAGTGGGATGTGTACGAACCCATTGTTGATCTTCTATCTAGTGAAGAAGTCGATGCCCTTGAAGCAAAAGAAGAAAGGAACGCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

238

Amino Acids

27.03

Weight (kDa)

6.55

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	18 - 80	3.3e-14	SNF5 / SMARCB1 / INI1
SNF5	PF04855	97 - 238	4.7e-18	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	525
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccII	CGCG	1 cut(s)	75
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	2 cut(s)	444, 477
AcyI	GRCGYC	2 cut(s)	111, 526
AfaI	GTAC	3 cut(s)	272, 568, 641
AfiI	CCNNNNNNNGG	4 cut(s)	61, 120, 282, 428
AgsI	TTSAA	5 cut(s)	106, 184, 355, 365, 689
AjnI	CCWGG	1 cut(s)	579
AluBI	AGCT	4 cut(s)	187, 301, 463, 491
AluI	AGCT	4 cut(s)	187, 301, 463, 491
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	3 cut(s)	7, 94, 259
ApoI	RAATTY	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	4 cut(s)	64, 334, 431, 577
AsuII	TTCGAA	2 cut(s)	84, 194
AvaII	GGWCC	4 cut(s)	64, 334, 431, 577
AxyI	CCTNAGG	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	183
BccI	CCATC	2 cut(s)	134, 136
BciT130I	CCWGG	1 cut(s)	581
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	529
BglII	AGATCT	1 cut(s)	602
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	1 cut(s)	581
Bme18I	GGWCC	4 cut(s)	64, 334, 431, 577
BmgT120I	GGNCC	4 cut(s)	64, 334, 431, 577
BmiI	GGNNCC	4 cut(s)	66, 125, 335, 527
BmrFI	CCNGG	1 cut(s)	581
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	183
Bpu14I	TTCGAA	2 cut(s)	84, 194
BsaHI	GRCGYC	2 cut(s)	111, 526
BsaJI	CCNNGG	2 cut(s)	256, 529
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 120, 282, 428
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	337, 574
Bse21I	CCTNAGG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	256, 529
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	4 cut(s)	61, 120, 282, 428
BseMII	CTCAG	2 cut(s)	366, 565
BseNI	ACTGG	2 cut(s)	337, 574
BseRI	GAGGAG	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	9, 96, 261
BshNI	GGYRCC	1 cut(s)	525
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	3 cut(s)	50, 347, 362
BslI	CCNNNNNNNGG	4 cut(s)	61, 120, 282, 428
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	3 cut(s)	50, 347, 362
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	3 cut(s)	9, 96, 261
Bsp119I	TTCGAA	2 cut(s)	84, 194
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	5 cut(s)	248, 370, 538, 602, 655
BspANI	GGCC	3 cut(s)	9, 96, 261
BspCNI	CTCAG	2 cut(s)	367, 564
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	4 cut(s)	66, 125, 335, 527
BspPI	GGATC	1 cut(s)	365
BspT104I	TTCGAA	2 cut(s)	84, 194
BspT107I	GGYRCC	1 cut(s)	525
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	337, 574
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	256, 529
BssMI	GATC	5 cut(s)	248, 370, 538, 602, 655
BssNI	GRCGYC	2 cut(s)	111, 526
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	2 cut(s)	172, 610
BstACI	GRCGYC	2 cut(s)	111, 526
BstAUI	TGTACA	1 cut(s)	270
BstBI	TTCGAA	2 cut(s)	84, 194
BstDEI	CTNAG	3 cut(s)	375, 512, 551
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	5 cut(s)	251, 373, 541, 605, 658
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	5 cut(s)	248, 370, 538, 602, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 513, 689
BstNI	CCWGG	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	602
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	9, 96, 261
BtsCI	GGATG	1 cut(s)	640
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	1 cut(s)	528
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	4 cut(s)	64, 334, 431, 577
CseI	GACGC	2 cut(s)	64, 119
CsiI	ACCWGGT	1 cut(s)	579
Csp6I	GTAC	3 cut(s)	271, 567, 640
CviAII	CATG	1 cut(s)	416
CviQI	GTAC	3 cut(s)	271, 567, 640
DdeI	CTNAG	3 cut(s)	375, 512, 551
DinI	GGCGCC	1 cut(s)	527
DpnI	GATC	5 cut(s)	250, 372, 540, 604, 657
DpnII	GATC	5 cut(s)	248, 370, 538, 602, 655
Eco130I	CCWWGG	1 cut(s)	256
Eco47I	GGWCC	4 cut(s)	64, 334, 431, 577
Eco57I	CTGAAG	2 cut(s)	444, 477
Eco81I	CCTNAGG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	256
EgeI	GGCGCC	1 cut(s)	527
EheI	GGCGCC	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	419
FaiI	YATR	6 cut(s)	269, 321, 346, 417, 468, 543
FaqI	GGGAC	3 cut(s)	50, 347, 362
FatI	CATG	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	538
FokI	GGATG	1 cut(s)	647
FspBI	CTAG	1 cut(s)	666
GlaI	GCGC	1 cut(s)	527
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	3 cut(s)	9, 96, 261
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	64, 119
HhaI	GCGC	1 cut(s)	528
Hin1I	GRCGYC	2 cut(s)	111, 526
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	299
HpaII	CCGG	1 cut(s)	276
Hpy166II	GTNNAC	3 cut(s)	273, 316, 640
Hpy188I	TCNGA	5 cut(s)	41, 133, 228, 294, 618
Hpy188III	TCNNGA	3 cut(s)	31, 374, 416
Hpy8I	GTNNAC	3 cut(s)	273, 316, 640
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	86, 124
HpyCH4III	ACNGT	2 cut(s)	172, 610
HpyCH4V	TGCA	4 cut(s)	401, 437, 449, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 513, 689
HpyF3I	CTNAG	3 cut(s)	375, 512, 551
Hsp92I	GRCGYC	2 cut(s)	111, 526
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	1 cut(s)	526
KasI	GGCGCC	1 cut(s)	525
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	248, 370, 538, 602, 655
LmnI	GCTCC	1 cut(s)	19
LweI	GCATC	1 cut(s)	670
MabI	ACCWGGT	1 cut(s)	579
MaeI	CTAG	1 cut(s)	666
MaeIII	GTNAC	2 cut(s)	166, 596
MalI	GATC	5 cut(s)	250, 372, 540, 604, 657
MboI	GATC	5 cut(s)	248, 370, 538, 602, 655
MboII	GAAGA	4 cut(s)	183, 650, 683, 710
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	602
MluCI	AATT	6 cut(s)	58, 69, 196, 217, 438, 450
Mly113I	GGCGCC	1 cut(s)	526
MnlI	CCTC	5 cut(s)	93, 276, 317, 370, 524
MseI	TTAA	2 cut(s)	216, 297
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	581
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	581
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	158, 513, 689
NarI	GGCGCC	1 cut(s)	526
NdeII	GATC	5 cut(s)	248, 370, 538, 602, 655
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	4 cut(s)	66, 125, 335, 527
NmeAIII	GCCGAG	1 cut(s)	554
NmuCI	GTSAC	1 cut(s)	596
NspV	TTCGAA	2 cut(s)	84, 194
PagI	TCATGA	1 cut(s)	415
PctI	GAATGC	1 cut(s)	48
PflFI	GACNNNGTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	61
PluTI	GGCGCC	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	4 cut(s)	66, 125, 335, 527
PspPI	GGNCC	4 cut(s)	64, 334, 431, 577
PsuI	RGATCY	1 cut(s)	602
PsyI	GACNNNGTC	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	3 cut(s)	272, 568, 641
RsaNI	GTAC	3 cut(s)	271, 567, 640
SaqAI	TTAA	2 cut(s)	216, 297
Sau3AI	GATC	5 cut(s)	248, 370, 538, 602, 655
Sau96I	GGNCC	4 cut(s)	64, 334, 431, 577
ScaI	AGTACT	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	581
SetI	ASST	9 cut(s)	104, 189, 303, 309, 395, 412, 465, 493, 582
SexAI	ACCWGGT	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	670
SfoI	GGCGCC	1 cut(s)	527
SfuI	TTCGAA	2 cut(s)	84, 194
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	4 cut(s)	64, 334, 431, 577
Sse9I	AATT	6 cut(s)	58, 69, 196, 217, 438, 450
SspDI	GGCGCC	1 cut(s)	525
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	579
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	172, 610
TaqI	TCGA	6 cut(s)	78, 84, 90, 194, 247, 678
TasI	AATT	6 cut(s)	58, 69, 196, 217, 438, 450
TatI	WGTACW	2 cut(s)	270, 566
Tru1I	TTAA	2 cut(s)	216, 297
Tru9I	TTAA	2 cut(s)	216, 297
TseFI	GTSAC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	2 cut(s)	17, 404
TspGWI	ACGGA	1 cut(s)	299
Tth111I	GACNNNGTC	1 cut(s)	581
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	4 cut(s)	64, 334, 431, 577
XapI	RAATTY	1 cut(s)	58
XspI	CTAG	1 cut(s)	666
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.