Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Forward (+)

10548380 .. 10551849

Gene Structure 3470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1137100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTCAGCCGCTCCGAAATCCAGTAAACTGAAGAAATCAAAAAATTGGTGCAAGGAGGGAGAAAGAGAAGAGAAAGCCATGAAAGGCCAGCTGTCGGCTTCCTCCAGAGGCCCTGTCAAGTTCAGAATGCCAACAGCTCAGAATTTGGTACCAATTCGCTTGGACCTCGACATCGACGGCCAAAGGTTCAAAGACTGCTTCACTTGGAACCCATCTGACCCTGACTCGGAGATTGTGGTGTTCGCGAAAAGGACAGCGAAAGACTTGAAGCTTCCTCCGGGTTTCATCACAGTCATTGCTTCGGCCATTCAGTCACAAATTGTTGAATTTCGATCACTTGAGGGGCAAGACATGTACACCGGCGAGAGGATTGTTCCGATTAAGCTTGATCTTCGAGTGAACCGCACTGTCATTAGGGACCAGTTTTTATGGGACTTGAACAACTTTGAAAGTGATCCTGAAGAGTTTGCTAAAACTTTCTGCGCGGACTTAGGTATTCAAGACCCTGAAGTTGGGCCTGCAATTGCCTTTTCAATTAGAGAACAACTGTATGAGATTGTAGTTCAAAGTGTAGCTTCAGTAAGAGAAACCAGAATTAACAAGAAGGGACGCCGTGGAGCTGAGTATACTCCAGTCAGTAAAGTAGGTAGTACTGGATTGGACCTGGTGAAGTTATTTGGTCACAGATCTAGTGTTGTTCGGAAAAGAAAGGAGTGGGACGTATATGAACCCATCGTTGATCTTCTATCAACCGAGGAAGTGGAGGCCCTTCAAGCGAAAGAAGAAAGGATTGCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

267

Amino Acids

30.13

Weight (kDa)

8.64

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	47 - 266	1.8e-33	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	148
AccBSI	CCGCTC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	626
AccII	CGCG	2 cut(s)	245, 485
AciI	CCGC	3 cut(s)	9, 403, 485
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	2 cut(s)	178, 303
AcsI	RAATTY	2 cut(s)	142, 326
AcuI	CTGAAG	4 cut(s)	50, 480, 528, 561
AcyI	GRCGYC	1 cut(s)	610
AfaI	GTAC	3 cut(s)	150, 356, 652
AfiI	CCNNNNNNNGG	4 cut(s)	94, 226, 366, 512
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	9 cut(s)	190, 268, 326, 439, 449, 500, 534, 566, 773
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	6 cut(s)	91, 137, 271, 385, 575, 620
AluI	AGCT	6 cut(s)	91, 137, 271, 385, 575, 620
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	6 cut(s)	85, 109, 178, 303, 515, 765
ApoI	RAATTY	2 cut(s)	142, 326
Asp718I	GGTACC	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	6 cut(s)	110, 163, 418, 515, 661, 766
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	679
AvaII	GGWCC	3 cut(s)	163, 418, 661
BanI	GGYRCC	1 cut(s)	148
BccI	CCATC	2 cut(s)	220, 740
BceAI	ACGGC	2 cut(s)	193, 597
BciT130I	CCWGG	1 cut(s)	665
BcnI	CCSGG	1 cut(s)	279
BfaI	CTAG	1 cut(s)	690
BglII	AGATCT	1 cut(s)	686
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
BmcAI	AGTACT	1 cut(s)	652
Bme1390I	CCNGG	2 cut(s)	279, 665
Bme18I	GGWCC	3 cut(s)	163, 418, 661
BmgT120I	GGNCC	6 cut(s)	110, 163, 418, 515, 661, 766
BmiI	GGNNCC	3 cut(s)	150, 209, 419
BmrFI	CCNGG	2 cut(s)	279, 665
BpmI	CTGGAG	2 cut(s)	88, 615
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	610
BsaJI	CCNNGG	2 cut(s)	613, 753
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 226, 366, 512
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	4 cut(s)	21, 421, 632, 658
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	2 cut(s)	613, 753
BseLI	CCNNNNNNNGG	4 cut(s)	94, 226, 366, 512
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	152, 612
BseNI	ACTGG	4 cut(s)	21, 421, 632, 658
Bsh1236I	CGCG	2 cut(s)	245, 485
BshFI	GGCC	6 cut(s)	87, 111, 180, 305, 517, 767
BshNI	GGYRCC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	278, 360
BslFI	GGGAC	4 cut(s)	431, 446, 621, 731
BslI	CCNNNNNNNGG	4 cut(s)	94, 226, 366, 512
BsmFI	GGGAC	4 cut(s)	431, 446, 621, 731
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	6 cut(s)	87, 111, 180, 305, 517, 767
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	5 cut(s)	332, 388, 454, 686, 739
Bsp68I	TCGCGA	1 cut(s)	245
BspACI	CCGC	3 cut(s)	9, 403, 485
BspANI	GGCC	6 cut(s)	87, 111, 180, 305, 517, 767
BspCNI	CTCAG	2 cut(s)	151, 613
BspFNI	CGCG	2 cut(s)	245, 485
BspLI	GGNNCC	3 cut(s)	150, 209, 419
BspPI	GGATC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	4 cut(s)	21, 421, 632, 658
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	613, 753
BssMI	GATC	5 cut(s)	332, 388, 454, 686, 739
BssNAI	GTATAC	1 cut(s)	627
BssNI	GRCGYC	1 cut(s)	610
Bst1107I	GTATAC	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	3 cut(s)	292, 409, 549
Bst6I	CTCTTC	2 cut(s)	63, 456
BstACI	GRCGYC	1 cut(s)	610
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	89, 519
BstDEI	CTNAG	3 cut(s)	138, 490, 621
BstDSI	CCRYGG	1 cut(s)	613
BstFNI	CGCG	2 cut(s)	245, 485
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	5 cut(s)	335, 391, 457, 689, 742
BstMBI	GATC	5 cut(s)	332, 388, 454, 686, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	773
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	277, 663
BstUI	CGCG	2 cut(s)	245, 485
BstX2I	RGATCY	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	686
BstZ17I	GTATAC	1 cut(s)	627
BsuRI	GGCC	6 cut(s)	87, 111, 180, 305, 517, 767
BtgI	CCRYGG	1 cut(s)	613
BtsIMutI	CAGTG	1 cut(s)	405
BtuMI	TCGCGA	1 cut(s)	245
Cac8I	GCNNGC	2 cut(s)	89, 519
CfoI	GCGC	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	6 cut(s)	110, 163, 418, 515, 661, 766
CseI	GACGC	1 cut(s)	618
CsiI	ACCWGGT	1 cut(s)	663
Csp6I	GTAC	3 cut(s)	149, 355, 651
CviAII	CATG	2 cut(s)	79, 352
CviQI	GTAC	3 cut(s)	149, 355, 651
DdeI	CTNAG	3 cut(s)	138, 490, 621
DpnI	GATC	5 cut(s)	334, 390, 456, 688, 741
DpnII	GATC	5 cut(s)	332, 388, 454, 686, 739
EaeI	YGGCCR	2 cut(s)	178, 303
Eam1104I	CTCTTC	2 cut(s)	63, 456
EarI	CTCTTC	2 cut(s)	63, 456
Eco47I	GGWCC	3 cut(s)	163, 418, 661
Eco57I	CTGAAG	4 cut(s)	50, 480, 528, 561
EcoO109I	RGGNCCY	2 cut(s)	110, 766
EcoRII	CCWGG	1 cut(s)	663
FaeI	CATG	2 cut(s)	82, 355
FaiI	YATR	7 cut(s)	80, 353, 430, 552, 627, 724, 726
FalI	AAGNNNNNCTT	2 cut(s)	559, 591
FaqI	GGGAC	4 cut(s)	431, 446, 621, 731
FatI	CATG	2 cut(s)	78, 351
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	1 cut(s)	9
GsuI	CTGGAG	2 cut(s)	88, 615
HaeIII	GGCC	6 cut(s)	87, 111, 180, 305, 517, 767
HapII	CCGG	2 cut(s)	278, 360
HgaI	GACGC	1 cut(s)	618
HhaI	GCGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	610
Hin1II	CATG	2 cut(s)	82, 355
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HindIII	AAGCTT	2 cut(s)	269, 383
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	2 cut(s)	278, 360
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	4 cut(s)	26, 357, 400, 627
Hpy188I	TCNGA	7 cut(s)	15, 125, 141, 217, 229, 378, 702
Hpy188III	TCNNGA	4 cut(s)	105, 244, 458, 500
Hpy8I	GTNNAC	4 cut(s)	26, 357, 400, 627
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	598, 779
HpyCH4III	ACNGT	3 cut(s)	292, 409, 549
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	2 cut(s)	51, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	773
HpyF3I	CTNAG	3 cut(s)	138, 490, 621
HpySE526I	ACGT	1 cut(s)	720
Hsp92I	GRCGYC	1 cut(s)	610
Hsp92II	CATG	2 cut(s)	82, 355
HspAI	GCGC	1 cut(s)	483
KpnI	GGTACC	1 cut(s)	152
Kzo9I	GATC	5 cut(s)	332, 388, 454, 686, 739
LmnI	GCTCC	2 cut(s)	16, 617
MabI	ACCWGGT	1 cut(s)	663
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	2 cut(s)	312, 680
MalI	GATC	5 cut(s)	334, 390, 456, 688, 741
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	5 cut(s)	332, 388, 454, 686, 739
MboII	GAAGA	6 cut(s)	43, 80, 383, 473, 734, 794
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	686
MluCI	AATT	8 cut(s)	43, 142, 153, 318, 326, 522, 534, 594
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	9 cut(s)	49, 101, 112, 176, 285, 334, 360, 748, 757
MseI	TTAA	2 cut(s)	381, 597
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	2 cut(s)	278, 360
MspR9I	CCNGG	2 cut(s)	279, 665
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	2 cut(s)	245, 485
MwoI	GCNNNNNNNGC	1 cut(s)	773
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	5 cut(s)	332, 388, 454, 686, 739
NlaIII	CATG	2 cut(s)	82, 355
NlaIV	GGNNCC	3 cut(s)	150, 209, 419
NmuCI	GTSAC	2 cut(s)	312, 680
NruI	TCGCGA	1 cut(s)	245
NspI	RCATGY	1 cut(s)	355
PciI	ACATGT	1 cut(s)	351
PctI	GAATGC	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PscI	ACATGT	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	3 cut(s)	150, 209, 419
PspPI	GGNCC	6 cut(s)	110, 163, 418, 515, 661, 766
PsuI	RGATCY	1 cut(s)	686
PvuII	CAGCTG	1 cut(s)	91
RruI	TCGCGA	1 cut(s)	245
RsaI	GTAC	3 cut(s)	150, 356, 652
RsaNI	GTAC	3 cut(s)	149, 355, 651
SaqAI	TTAA	2 cut(s)	381, 597
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	5 cut(s)	332, 388, 454, 686, 739
Sau96I	GGNCC	6 cut(s)	110, 163, 418, 515, 661, 766
ScaI	AGTACT	1 cut(s)	652
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	279, 665
SexAI	ACCWGGT	1 cut(s)	663
SgrAI	CRCCGGYG	1 cut(s)	359
SinI	GGWCC	3 cut(s)	163, 418, 661
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	8 cut(s)	43, 142, 153, 318, 326, 522, 534, 594
SsiI	CCGC	3 cut(s)	9, 403, 485
SspMI	CTAG	1 cut(s)	690
StyD4I	CCNGG	2 cut(s)	277, 663
TaaI	ACNGT	3 cut(s)	292, 409, 549
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	4 cut(s)	168, 174, 331, 394
TasI	AATT	8 cut(s)	43, 142, 153, 318, 326, 522, 534, 594
TatI	WGTACW	2 cut(s)	354, 650
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	381, 597
Tru9I	TTAA	2 cut(s)	381, 597
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	2 cut(s)	312, 680
Tsp45I	GTSAC	2 cut(s)	312, 680
TspDTI	ATGAA	3 cut(s)	95, 274, 741
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	3 cut(s)	163, 418, 661
XapI	RAATTY	2 cut(s)	142, 326
XceI	RCATGY	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	626
XspI	CTAG	1 cut(s)	690
ZrmI	AGTACT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.