Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Forward (+)

8247721 .. 8251048

Gene Structure 3328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11940.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGATTTTTTTTTGGTTAAAACTCAAAAGACTAATTAATCCACAACTGGCGGGTGTGACCGGCATCGGCCCAATCCAATTAATTGCTGGGCTAATTGATCAGAAGACGTCGGGTTCAAACGTACCCGCAACTTGCGAGCCCGTCAACAAAATACGGAAGAACGCAATTGGAAGGGTATTTTCGGCAAATAAAGACGAGCAGAAGGAACCTCAGAGACTCGAGCCAAAAAGAAGAAAGCGAAGAGTCGGGTCGGGCATGTCAGCCGCTCCGAAATCCAGTAAACTGAAGAAATCAAAAAATTGGTGCAAGGAGGGAGAAAGAGAAGAGAAAGCCATGAAAGGCCAGCTGTCGGCTTCCTCCAGAGGCCCTGTCAAGTTCAGAATGCCAACAGCTCAGAATTTGGTACCAATTCGCTTGGACCTCGACATCGACGGCCAAAGGTTCAAAGACTGTTTCACTTGGAACCCATCTGACCCTGACTCGGAGATTGTGGTGTTTGCGAAAAGGACAGCGAAAGACTTGAAGCTTCCTCCGGGTTTCATCACAGTCATTGCTTCTGCCATTCAGTCACAAATTGTTGAATTTCGATCATTTGAGGGGCAAGACATGTACACCGTCGAGAGGATTGTTCCGATTAAGCTTGATCTTCGAGTGAACCGCACTGTCATTAGGGACCAGTTTTTATGGGACTTGAACAACTTTGAAAGTGATCCTGAAGAGTTTGCTAAAACTTTCTGCGCGGACTTAGGTATTCAAGACCCTGAAGTTGGGCCTGCAATTGCCTTTTCAATTAGAGAACAACTGTATGAGATTGTAGTTCAAAGTGTAGCTTCAGTAAGAGAAACCAGAATTAACAAGAAGGGACGCCGTGGAGCTGAGTATACTCCAGTCAGTAAAGTAGGTAGTACTGGATTGGACCTGGTGAAGCTATTTGGTCACAGATCTAGTGTTGTTCGGAAAAGAAAGGAGTGGGATGTATACGAACCCATCGTTGATATTCTATCAACCGAGGAAGTGGAGGCCCTTCAAGCGAAAGAAGAAAGGATTGCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

352

Amino Acids

39.67

Weight (kDa)

9.58

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
Acc65I	GGTACC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	403
AccBSI	CCGCTC	1 cut(s)	266
AccI	GTMKAC	2 cut(s)	881, 978
AccII	CGCG	1 cut(s)	740
AciI	CCGC	5 cut(s)	50, 126, 264, 658, 740
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	2 cut(s)	397, 581
AcuI	CTGAAG	4 cut(s)	305, 735, 783, 816
AcyI	GRCGYC	2 cut(s)	107, 865
AfaI	GTAC	4 cut(s)	123, 405, 611, 907
AfiI	CCNNNNNNNGG	4 cut(s)	349, 481, 621, 767
AflIII	ACRYGT	1 cut(s)	606
AjnI	CCWGG	1 cut(s)	918
AluBI	AGCT	7 cut(s)	346, 392, 526, 640, 830, 875, 928
AluI	AGCT	7 cut(s)	346, 392, 526, 640, 830, 875, 928
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	1 cut(s)	704
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	6 cut(s)	67, 340, 364, 433, 770, 1020
ApoI	RAATTY	2 cut(s)	397, 581
AseI	ATTAAT	2 cut(s)	36, 80
Asp718I	GGTACC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	7 cut(s)	68, 365, 418, 673, 770, 916, 1021
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	934
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	3 cut(s)	418, 673, 916
BanI	GGYRCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	110
BccI	CCATC	2 cut(s)	475, 995
BceAI	ACGGC	2 cut(s)	448, 852
BciT130I	CCWGG	1 cut(s)	920
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	945
BglII	AGATCT	1 cut(s)	941
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
BmcAI	AGTACT	1 cut(s)	907
Bme1390I	CCNGG	2 cut(s)	534, 920
Bme18I	GGWCC	3 cut(s)	418, 673, 916
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	7 cut(s)	68, 365, 418, 673, 770, 916, 1021
BmiI	GGNNCC	4 cut(s)	207, 405, 464, 674
BmrFI	CCNGG	2 cut(s)	534, 920
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	343, 870
BpuMI	CCSGG	1 cut(s)	534
BsaHI	GRCGYC	2 cut(s)	107, 865
BsaJI	CCNNGG	2 cut(s)	868, 1008
Bsc4I	CCNNNNNNNGG	4 cut(s)	349, 481, 621, 767
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	5 cut(s)	51, 276, 676, 887, 913
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	920
BseDI	CCNNGG	2 cut(s)	868, 1008
BseGI	GGATG	1 cut(s)	979
BseLI	CCNNNNNNNGG	4 cut(s)	349, 481, 621, 767
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	3 cut(s)	224, 407, 867
BseNI	ACTGG	5 cut(s)	51, 276, 676, 887, 913
BseYI	CCCAGC	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	740
BshFI	GGCC	6 cut(s)	69, 342, 366, 435, 772, 1022
BshNI	GGYRCC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	60, 533
BslFI	GGGAC	3 cut(s)	686, 701, 876
BslI	CCNNNNNNNGG	4 cut(s)	349, 481, 621, 767
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	3 cut(s)	686, 701, 876
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	6 cut(s)	69, 342, 366, 435, 772, 1022
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	5 cut(s)	97, 587, 643, 709, 941
BspACI	CCGC	5 cut(s)	50, 126, 264, 658, 740
BspANI	GGCC	6 cut(s)	69, 342, 366, 435, 772, 1022
BspCNI	CTCAG	3 cut(s)	223, 406, 868
BspFNI	CGCG	1 cut(s)	740
BspLI	GGNNCC	4 cut(s)	207, 405, 464, 674
BspPI	GGATC	1 cut(s)	704
BspT107I	GGYRCC	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	5 cut(s)	51, 276, 676, 887, 913
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	868, 1008
BssMI	GATC	5 cut(s)	97, 587, 643, 709, 941
BssNAI	GTATAC	2 cut(s)	882, 979
BssNI	GRCGYC	2 cut(s)	107, 865
Bst1107I	GTATAC	2 cut(s)	882, 979
Bst2UI	CCWGG	1 cut(s)	920
Bst4CI	ACNGT	5 cut(s)	452, 547, 616, 664, 804
Bst6I	CTCTTC	3 cut(s)	235, 318, 711
BstACI	GRCGYC	2 cut(s)	107, 865
BstAUI	TGTACA	1 cut(s)	609
BstC8I	GCNNGC	3 cut(s)	137, 344, 774
BstDEI	CTNAG	4 cut(s)	210, 393, 745, 876
BstDSI	CCRYGG	1 cut(s)	868
BstF5I	GGATG	1 cut(s)	979
BstFNI	CGCG	1 cut(s)	740
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	5 cut(s)	100, 590, 646, 712, 944
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	5 cut(s)	97, 587, 643, 709, 941
BstMWI	GCNNNNNNNGC	1 cut(s)	1028
BstNI	CCWGG	1 cut(s)	920
BstNSI	RCATGY	2 cut(s)	259, 610
BstSCI	CCNGG	2 cut(s)	532, 918
BstUI	CGCG	1 cut(s)	740
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BstZ17I	GTATAC	2 cut(s)	882, 979
BsuRI	GGCC	6 cut(s)	69, 342, 366, 435, 772, 1022
BtgI	CCRYGG	1 cut(s)	868
BtsCI	GGATG	1 cut(s)	979
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	3 cut(s)	137, 344, 774
CfoI	GCGC	1 cut(s)	740
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	7 cut(s)	68, 365, 418, 673, 770, 916, 1021
CseI	GACGC	1 cut(s)	873
CsiI	ACCWGGT	1 cut(s)	918
Csp6I	GTAC	4 cut(s)	122, 404, 610, 906
CviAII	CATG	3 cut(s)	256, 334, 607
CviQI	GTAC	4 cut(s)	122, 404, 610, 906
DdeI	CTNAG	4 cut(s)	210, 393, 745, 876
DpnI	GATC	5 cut(s)	99, 589, 645, 711, 943
DpnII	GATC	5 cut(s)	97, 587, 643, 709, 941
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	3 cut(s)	235, 318, 711
EarI	CTCTTC	3 cut(s)	235, 318, 711
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	3 cut(s)	418, 673, 916
Eco57I	CTGAAG	4 cut(s)	305, 735, 783, 816
Eco88I	CYCGRG	1 cut(s)	218
EcoO109I	RGGNCCY	2 cut(s)	365, 1021
EcoRII	CCWGG	1 cut(s)	918
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	3 cut(s)	259, 337, 610
FaiI	YATR	7 cut(s)	257, 335, 608, 685, 807, 882, 979
FalI	AAGNNNNNCTT	2 cut(s)	814, 846
FaqI	GGGAC	3 cut(s)	686, 701, 876
FatI	CATG	3 cut(s)	255, 333, 606
FauI	CCCGC	2 cut(s)	43, 133
FbaI	TGATCA	1 cut(s)	97
FblI	GTMKAC	2 cut(s)	881, 978
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	986
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	945
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	1 cut(s)	264
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	2 cut(s)	343, 870
HaeIII	GGCC	6 cut(s)	69, 342, 366, 435, 772, 1022
HapII	CCGG	2 cut(s)	60, 533
HgaI	GACGC	1 cut(s)	873
HhaI	GCGC	1 cut(s)	740
Hin1I	GRCGYC	2 cut(s)	107, 865
Hin1II	CATG	3 cut(s)	259, 337, 610
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	2 cut(s)	524, 638
HinfI	GANTC	3 cut(s)	216, 243, 479
HpaII	CCGG	2 cut(s)	60, 533
HphI	GGTGA	1 cut(s)	934
Hpy166II	GTNNAC	6 cut(s)	145, 281, 612, 655, 882, 979
Hpy188I	TCNGA	9 cut(s)	102, 213, 270, 380, 396, 472, 484, 633, 957
Hpy188III	TCNNGA	4 cut(s)	360, 619, 713, 755
Hpy8I	GTNNAC	6 cut(s)	145, 281, 612, 655, 882, 979
Hpy99I	CGWCG	3 cut(s)	112, 434, 620
HpyAV	CCTTC	4 cut(s)	165, 196, 853, 1034
HpyCH4III	ACNGT	5 cut(s)	452, 547, 616, 664, 804
HpyCH4IV	ACGT	2 cut(s)	107, 120
HpyCH4V	TGCA	2 cut(s)	306, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1028
HpyF3I	CTNAG	4 cut(s)	210, 393, 745, 876
HpySE526I	ACGT	2 cut(s)	107, 120
Hsp92I	GRCGYC	2 cut(s)	107, 865
Hsp92II	CATG	3 cut(s)	259, 337, 610
HspAI	GCGC	1 cut(s)	738
KpnI	GGTACC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	97, 587, 643, 709, 941
LmnI	GCTCC	2 cut(s)	271, 872
LweI	GCATC	1 cut(s)	72
MabI	ACCWGGT	1 cut(s)	918
MaeI	CTAG	1 cut(s)	945
MaeII	ACGT	2 cut(s)	107, 120
MaeIII	GTNAC	3 cut(s)	55, 567, 935
MalI	GATC	5 cut(s)	99, 589, 645, 711, 943
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	5 cut(s)	97, 587, 643, 709, 941
MboII	GAAGA	9 cut(s)	115, 169, 243, 252, 298, 335, 638, 728, 1049
MfeI	CAATTG	2 cut(s)	165, 777
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	1 cut(s)	141
MlyI	GAGTC	3 cut(s)	210, 252, 473
MseI	TTAA	5 cut(s)	17, 36, 80, 636, 852
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	2 cut(s)	60, 533
MspR9I	CCNGG	2 cut(s)	534, 920
MunI	CAATTG	2 cut(s)	165, 777
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	920
MvnI	CGCG	1 cut(s)	740
MwoI	GCNNNNNNNGC	1 cut(s)	1028
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	5 cut(s)	97, 587, 643, 709, 941
NlaIII	CATG	3 cut(s)	259, 337, 610
NlaIV	GGNNCC	4 cut(s)	207, 405, 464, 674
NmuCI	GTSAC	3 cut(s)	55, 567, 935
NspI	RCATGY	2 cut(s)	259, 610
PaeR7I	CTCGAG	1 cut(s)	218
PciI	ACATGT	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	987
PctI	GAATGC	1 cut(s)	387
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	3 cut(s)	210, 251, 473
PpsI	GAGTC	3 cut(s)	210, 251, 473
PscI	ACATGT	1 cut(s)	606
PshBI	ATTAAT	2 cut(s)	36, 80
Psp6I	CCWGG	1 cut(s)	918
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	918
PspN4I	GGNNCC	4 cut(s)	207, 405, 464, 674
PspPI	GGNCC	7 cut(s)	68, 365, 418, 673, 770, 916, 1021
PspXI	VCTCGAGB	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	4 cut(s)	123, 405, 611, 907
RsaNI	GTAC	4 cut(s)	122, 404, 610, 906
SaqAI	TTAA	5 cut(s)	17, 36, 80, 636, 852
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	5 cut(s)	97, 587, 643, 709, 941
Sau96I	GGNCC	7 cut(s)	68, 365, 418, 673, 770, 916, 1021
ScaI	AGTACT	1 cut(s)	907
SchI	GAGTC	3 cut(s)	210, 252, 473
ScrFI	CCNGG	2 cut(s)	534, 920
SduI	GDGCHC	1 cut(s)	141
SexAI	ACCWGGT	1 cut(s)	918
SfaNI	GCATC	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	218
SinI	GGWCC	3 cut(s)	418, 673, 916
SlaI	CTCGAG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SsiI	CCGC	5 cut(s)	50, 126, 264, 658, 740
SspMI	CTAG	1 cut(s)	945
StyD4I	CCNGG	2 cut(s)	532, 918
TaaI	ACNGT	5 cut(s)	452, 547, 616, 664, 804
TaiI	ACGT	2 cut(s)	110, 123
TaqI	TCGA	6 cut(s)	219, 423, 429, 586, 618, 649
TatI	WGTACW	2 cut(s)	609, 905
TauI	GCSGC	1 cut(s)	266
Tru1I	TTAA	5 cut(s)	17, 36, 80, 636, 852
Tru9I	TTAA	5 cut(s)	17, 36, 80, 636, 852
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	3 cut(s)	55, 567, 935
Tsp45I	GTSAC	3 cut(s)	55, 567, 935
TspDTI	ATGAA	2 cut(s)	350, 529
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	667
VpaK11BI	GGWCC	3 cut(s)	418, 673, 916
VspI	ATTAAT	2 cut(s)	36, 80
XapI	RAATTY	2 cut(s)	397, 581
XceI	RCATGY	2 cut(s)	259, 610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XhoI	CTCGAG	1 cut(s)	218
XmiI	GTMKAC	2 cut(s)	881, 978
XspI	CTAG	1 cut(s)	945
ZraI	GACGTC	1 cut(s)	108
ZrmI	AGTACT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.