Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Forward (+)

14437145 .. 14439485

Gene Structure 2341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007192

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGACAGACCCTGATGGAGAGATTGCCAAGTTTGCGAAAGTAACAGTTAGAGACTTGAAGCTGTCTTCGAATTACGAGAGAGCCATTGTTAATTCCATTCAGAGCCAAGTTGATATTTTTCGATCATTCCAAGGCCAAGATATGTACACCGGCGAGAGGATTGTTCCAATTAAGATTGCAGTCCAAAATGTAGCTTCAGCAAGAGAAAGCAGACTAAGCAAGAAAGGGCGCCGAGGGAGTGATCATGCTCCAATCAGTAAAGCAAGTAGTACTGGATTGGACCTGGTCAAGTCATTTGGTCACAGATCTACTGTCATTCGGAAAAGAAAGGAGTGGGATGTGTATGAACCCATTGTTGATCTTCTATCTAGTGAAGAAGTCGATGCCCTTGAAGCAAAAGAAGAAAGGAACGCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

140

Amino Acids

15.62

Weight (kDa)

9.22

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	3 - 139	2e-06	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	2 cut(s)	146, 271
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	58, 392
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	2 cut(s)	61, 194
AluI	AGCT	2 cut(s)	61, 194
Alw26I	GTCTC	1 cut(s)	45
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	232
BglII	AGATCT	1 cut(s)	305
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	57
Bpu14I	TTCGAA	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	229
BsaJI	CCNNGG	2 cut(s)	130, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	130, 232
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	122, 241, 305, 358
BspANI	GGCC	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	130, 232
BssMI	GATC	4 cut(s)	122, 241, 305, 358
BssNI	GRCGYC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	46, 313
BstACI	GRCGYC	1 cut(s)	229
BstAUI	TGTACA	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	4 cut(s)	125, 244, 308, 361
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	4 cut(s)	122, 241, 305, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 216, 392
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	280
CsiI	ACCWGGT	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	145, 270
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	5 cut(s)	61, 83, 105, 135, 194
CviKI_1	RGCY	5 cut(s)	61, 83, 105, 135, 194
CviQI	GTAC	2 cut(s)	145, 270
DdeI	CTNAG	1 cut(s)	215
DinI	GGCGCC	1 cut(s)	230
DpnI	GATC	4 cut(s)	124, 243, 307, 360
DpnII	GATC	4 cut(s)	122, 241, 305, 358
Eco130I	CCWWGG	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	130
EgeI	GGCGCC	1 cut(s)	230
EheI	GGCGCC	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	248
FaiI	YATR	3 cut(s)	143, 246, 345
FatI	CATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	241
FokI	GGATG	1 cut(s)	350
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	102, 321
Hpy8I	GTNNAC	1 cut(s)	147
HpyCH4III	ACNGT	2 cut(s)	46, 313
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 216, 392
HpyF3I	CTNAG	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	248
HspAI	GCGC	1 cut(s)	229
KasI	GGCGCC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	122, 241, 305, 358
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	5 cut(s)	24, 163, 258, 269, 296
LweI	GCATC	1 cut(s)	373
MabI	ACCWGGT	1 cut(s)	282
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	40, 299
MalI	GATC	4 cut(s)	124, 243, 307, 360
MboI	GATC	4 cut(s)	122, 241, 305, 358
MboII	GAAGA	4 cut(s)	57, 353, 386, 413
MflI	RGATCY	1 cut(s)	305
MluCI	AATT	3 cut(s)	70, 91, 168
Mly113I	GGCGCC	1 cut(s)	229
MnlI	CCTC	2 cut(s)	150, 227
MseI	TTAA	2 cut(s)	90, 171
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	32, 216, 392
NarI	GGCGCC	1 cut(s)	229
NdeII	GATC	4 cut(s)	122, 241, 305, 358
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	230
NmeAIII	GCCGAG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	299
NspV	TTCGAA	1 cut(s)	68
PflFI	GACNNNGTC	1 cut(s)	284
PluTI	GGCGCC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	305
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	2 cut(s)	146, 271
RsaNI	GTAC	2 cut(s)	145, 270
SaqAI	TTAA	2 cut(s)	90, 171
Sau3AI	GATC	4 cut(s)	122, 241, 305, 358
Sau96I	GGNCC	1 cut(s)	280
ScaI	AGTACT	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	3 cut(s)	63, 196, 285
SexAI	ACCWGGT	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	373
SfoI	GGCGCC	1 cut(s)	230
SfuI	TTCGAA	1 cut(s)	68
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	3 cut(s)	70, 91, 168
SspDI	GGCGCC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	46, 313
TaqI	TCGA	3 cut(s)	68, 121, 381
TasI	AATT	3 cut(s)	70, 91, 168
TatI	WGTACW	2 cut(s)	144, 269
Tru1I	TTAA	2 cut(s)	90, 171
Tru9I	TTAA	2 cut(s)	90, 171
TseFI	GTSAC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	360
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	280
XspI	CTAG	1 cut(s)	369
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.