Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Reverse (-)

38025330 .. 38029096

Gene Structure 3767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0220900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGGTATCAGCACCACCCGGTGTTCTAAGCTCACCATCCTCACCTTTCTCATCTCCGCCGCTAAAACCCAGACTCCTCGCCTTCGCCAATTCCCGGTGGGCACATCTCCCACGAAAGCACCACCACCTGAAGCTCCAACACATGGATTCTCACTCTCACGGAATCATCACTCCCTCTGCCTCTTACAATGGCTCCACTCTCACCACCGATTCCCCTACTGGCTCTGGGAAGAGAATTGGGGAGGTTAAGAGGGAGACCAAGGAGACCAATGTCTCCGTCAAAATAAACCTTGACGGCACCGGAATTGCTGATTCCAGTACTGGGATTCCCTTCCTTGATCATATGTTGGATCAACTTGCTTCGCACGGGTTGTTGGACGTGCATGTGAGGGCTACTGGTGACATCCACATTGATGATCATCACACAAATGAAGATGTCGCTCTTGCTATTGGAACGGCTTTGCTTCAAGCACTTGGTGATAGAAAAGGAATCAACAGGTTTGGTGACTTCTCTGCTCCTCTTGATGAAGCATGGATTCATGTCTCACTGGATTTATCTGGCCGACCACATTTGGGTTATGATCTACAGATACCGACCGAGAGAGTTGGTACCTATGACACTCAGCTGGTGGAACATTTTTTCCAGTCTTTGGTGAATACTTCTGGTATGACACTTCACATCCGGCAGCTTGCTGGAAGGAACTCTCACCATATTATTGAGGCAACCTTCAAAGCATTTGCAAGGGCTCTTCGACAAGCACTAGAATATGACCCACGTCGCCTTGGGAGCATTCCAAGCTCGAAAGGTGTCCTGTCACGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

275

Amino Acids

30.01

Weight (kDa)

7.05

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPD	PF00475	108 - 251	2.3e-63	Imidazoleglycerol-phosphate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	611
AccB1I	GGYRCC	2 cut(s)	299, 611
AccB7I	CCANNNNNTGG	2 cut(s)	145, 652
AciI	CCGC	2 cut(s)	59, 62
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	152
AdeI	CACNNNGTG	2 cut(s)	23, 479
AfaI	GTAC	2 cut(s)	322, 613
AfiI	CCNNNNNNNGG	5 cut(s)	96, 145, 324, 575, 652
AgsI	TTSAA	2 cut(s)	470, 733
AjiI	CACGTC	2 cut(s)	382, 779
AloI	GAACNNNNNNTCC	2 cut(s)	627, 659
AluBI	AGCT	5 cut(s)	33, 136, 628, 691, 801
AluI	AGCT	5 cut(s)	33, 136, 628, 691, 801
Alw26I	GTCTC	4 cut(s)	251, 260, 280, 550
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	1 cut(s)	688
Asp718I	GGTACC	1 cut(s)	611
AsuC2I	CCSGG	2 cut(s)	21, 97
AsuHPI	GGTGA	8 cut(s)	27, 36, 196, 413, 491, 518, 667, 701
BaeGI	GKGCMC	1 cut(s)	106
BanI	GGYRCC	2 cut(s)	299, 611
BanII	GRGCYC	1 cut(s)	751
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	313, 474
BclI	TGATCA	2 cut(s)	340, 418
BcnI	CCSGG	2 cut(s)	21, 97
BcoDI	GTCTC	4 cut(s)	251, 260, 280, 550
BfaI	CTAG	1 cut(s)	764
BfmI	CTRYAG	1 cut(s)	587
BisI	GCNGC	2 cut(s)	62, 689
BlsI	GCNGC	2 cut(s)	63, 690
BmcAI	AGTACT	1 cut(s)	322
Bme1390I	CCNGG	2 cut(s)	21, 97
BmgBI	CACGTC	2 cut(s)	382, 779
BmiI	GGNNCC	3 cut(s)	196, 301, 613
BmrFI	CCNGG	2 cut(s)	21, 97
BmrI	ACTGGG	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	333
BoxI	GACNNNNGTC	2 cut(s)	272, 777
BpuMI	CCSGG	2 cut(s)	21, 97
BsaBI	GATNNNNATC	1 cut(s)	420
BsaI	GGTCTC	2 cut(s)	251, 260
BsaJI	CCNNGG	2 cut(s)	261, 784
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 179, 209
Bsc4I	CCNNNNNNNGG	5 cut(s)	96, 145, 324, 575, 652
Bse1I	ACTGG	6 cut(s)	226, 318, 328, 403, 555, 646
Bse8I	GATNNNNATC	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	261, 784
BseGI	GGATG	3 cut(s)	38, 405, 681
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	5 cut(s)	96, 145, 324, 575, 652
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	6 cut(s)	226, 318, 328, 403, 555, 646
BseRI	GAGGAG	2 cut(s)	68, 510
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	700
Bsh1285I	CGRYCG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	564
BshNI	GGYRCC	2 cut(s)	299, 611
BsiEI	CGRYCG	1 cut(s)	600
BsiSI	CCGG	4 cut(s)	21, 97, 303, 685
BslI	CCNNNNNNNGG	5 cut(s)	96, 145, 324, 575, 652
BsmAI	GTCTC	4 cut(s)	251, 260, 280, 550
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	1 cut(s)	564
Bso31I	GGTCTC	2 cut(s)	251, 260
Bsp1286I	GDGCHC	2 cut(s)	106, 751
Bsp143I	GATC	4 cut(s)	340, 352, 418, 583
BspACI	CCGC	2 cut(s)	59, 62
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	1 cut(s)	637
BspLI	GGNNCC	3 cut(s)	196, 301, 613
BspPI	GGATC	1 cut(s)	360
BspQI	GCTCTTC	1 cut(s)	756
BspT107I	GGYRCC	2 cut(s)	299, 611
BspTNI	GGTCTC	2 cut(s)	251, 260
BsrI	ACTGG	6 cut(s)	226, 318, 328, 403, 555, 646
BssECI	CCNNGG	2 cut(s)	261, 784
BssMI	GATC	4 cut(s)	340, 352, 418, 583
BssT1I	CCWWGG	2 cut(s)	261, 784
Bst6I	CTCTTC	2 cut(s)	227, 756
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	2 cut(s)	29, 624
BstF5I	GGATG	3 cut(s)	38, 405, 681
BstKTI	GATC	4 cut(s)	343, 355, 421, 586
BstMAI	GTCTC	4 cut(s)	251, 260, 280, 550
BstMBI	GATC	4 cut(s)	340, 352, 418, 583
BstMCI	CGRYCG	1 cut(s)	600
BstMWI	GCNNNNNNNGC	2 cut(s)	789, 798
BstNSI	RCATGY	1 cut(s)	389
BstPAI	GACNNNNGTC	2 cut(s)	272, 777
BstSCI	CCNGG	2 cut(s)	19, 95
BstSFI	CTRYAG	1 cut(s)	587
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	564
BtrI	CACGTC	2 cut(s)	382, 779
BtsCI	GGATG	3 cut(s)	38, 405, 681
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	1 cut(s)	693
Csp6I	GTAC	2 cut(s)	321, 612
CviAII	CATG	4 cut(s)	145, 386, 534, 542
CviQI	GTAC	2 cut(s)	321, 612
DdeI	CTNAG	2 cut(s)	29, 624
DpnI	GATC	4 cut(s)	342, 354, 420, 585
DpnII	GATC	4 cut(s)	340, 352, 418, 583
DraIII	CACNNNGTG	2 cut(s)	23, 479
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	2 cut(s)	227, 756
EarI	CTCTTC	2 cut(s)	227, 756
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	261, 784
Eco24I	GRGCYC	1 cut(s)	751
Eco31I	GGTCTC	2 cut(s)	251, 260
Eco57I	CTGAAG	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	261, 784
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	2 cut(s)	261, 784
FaeI	CATG	4 cut(s)	148, 389, 537, 545
FatI	CATG	4 cut(s)	144, 385, 533, 541
FauNDI	CATATG	1 cut(s)	345
FbaI	TGATCA	2 cut(s)	340, 418
Fnu4HI	GCNGC	2 cut(s)	62, 689
FokI	GGATG	3 cut(s)	25, 392, 668
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	2 cut(s)	62, 689
FspBI	CTAG	1 cut(s)	764
GluI	GCNGC	2 cut(s)	62, 689
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	4 cut(s)	21, 97, 303, 685
Hin1II	CATG	4 cut(s)	148, 389, 537, 545
HinfI	GANTC	8 cut(s)	75, 149, 165, 212, 314, 328, 492, 538
HpaII	CCGG	4 cut(s)	21, 97, 303, 685
HphI	GGTGA	8 cut(s)	27, 36, 196, 413, 491, 518, 667, 701
Hpy188III	TCNNGA	2 cut(s)	524, 825
Hpy99I	CGWCG	1 cut(s)	783
HpyAV	CCTTC	4 cut(s)	94, 343, 693, 739
HpyCH4IV	ACGT	3 cut(s)	381, 778, 820
HpyCH4V	TGCA	2 cut(s)	385, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	789, 798
HpyF3I	CTNAG	2 cut(s)	29, 624
HpySE526I	ACGT	3 cut(s)	381, 778, 820
Hsp92II	CATG	4 cut(s)	148, 389, 537, 545
KpnI	GGTACC	1 cut(s)	615
Ksp22I	TGATCA	2 cut(s)	340, 418
Kzo9I	GATC	4 cut(s)	340, 352, 418, 583
LguI	GCTCTTC	1 cut(s)	756
LmnI	GCTCC	4 cut(s)	141, 200, 523, 789
Lsp1109I	GCAGC	1 cut(s)	700
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	3 cut(s)	381, 778, 820
MaeIII	GTNAC	3 cut(s)	401, 506, 816
MalI	GATC	4 cut(s)	342, 354, 420, 585
MboI	GATC	4 cut(s)	340, 352, 418, 583
MboII	GAAGA	3 cut(s)	244, 446, 743
MhlI	GDGCHC	2 cut(s)	106, 751
MluCI	AATT	3 cut(s)	91, 237, 306
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	3 cut(s)	163, 330, 357
MnlI	CCTC	9 cut(s)	52, 89, 187, 193, 238, 246, 384, 531, 715
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	2 cut(s)	414, 429
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	4 cut(s)	21, 97, 303, 685
MspR9I	CCNGG	2 cut(s)	21, 97
Mva1269I	GAATGC	1 cut(s)	792
MwoI	GCNNNNNNNGC	2 cut(s)	789, 798
NciI	CCSGG	2 cut(s)	21, 97
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	4 cut(s)	340, 352, 418, 583
NlaIII	CATG	4 cut(s)	148, 389, 537, 545
NlaIV	GGNNCC	3 cut(s)	196, 301, 613
NmuCI	GTSAC	3 cut(s)	401, 506, 816
NspI	RCATGY	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	756
PctI	GAATGC	1 cut(s)	792
PfeI	GAWTC	7 cut(s)	149, 165, 212, 314, 328, 492, 538
PflMI	CCANNNNNTGG	2 cut(s)	145, 652
PkrI	GCNGC	2 cut(s)	63, 690
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PshAI	GACNNNNGTC	2 cut(s)	272, 777
PspN4I	GGNNCC	3 cut(s)	196, 301, 613
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	2 cut(s)	322, 613
RsaNI	GTAC	2 cut(s)	321, 612
RseI	CAYNNNNRTG	2 cut(s)	414, 429
SapI	GCTCTTC	1 cut(s)	756
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	62, 689
Sau3AI	GATC	4 cut(s)	340, 352, 418, 583
ScaI	AGTACT	1 cut(s)	322
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	21, 97
SduI	GDGCHC	2 cut(s)	106, 751
SfcI	CTRYAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	2 cut(s)	414, 429
Sse9I	AATT	3 cut(s)	91, 237, 306
SsiI	CCGC	2 cut(s)	59, 62
SspMI	CTAG	1 cut(s)	764
StyD4I	CCNGG	2 cut(s)	19, 95
StyI	CCWWGG	2 cut(s)	261, 784
TaiI	ACGT	3 cut(s)	384, 781, 823
TaqI	TCGA	2 cut(s)	754, 803
TaqII	GACCGA	1 cut(s)	614
TasI	AATT	3 cut(s)	91, 237, 306
TatI	WGTACW	1 cut(s)	320
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	7 cut(s)	149, 165, 212, 314, 328, 492, 538
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	3 cut(s)	401, 506, 816
TseI	GCWGC	1 cut(s)	688
Tsp45I	GTSAC	3 cut(s)	401, 506, 816
TspDTI	ATGAA	3 cut(s)	447, 530, 543
TspGWI	ACGGA	2 cut(s)	177, 268
TspRI	CASTG	1 cut(s)	555
Van91I	CCANNNNNTGG	2 cut(s)	145, 652
XceI	RCATGY	1 cut(s)	389
XspI	CTAG	1 cut(s)	764
ZrmI	AGTACT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.