Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Reverse (-)

50330692 .. 50332774

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG281100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTACACCGGCGAGAGGATTGTTCCGATTAAGCTTGATCTCCGTGTAAACCATACTCTCATTAGGGACCAGTTTTTATGGGACTTGAACAACTTTGAAAGTGATCCCGAGGAGTTTGCTAAAACCTTGTGTGCAGATTTAGGTGTTCATGACCCTGAAGTTGGTCCTGCAATTGCTTTTGCAATTAGAGAACAGCTGTATGAGATTGCAGTCCAAAATGTAGCTTCAGCAAGAGAAAGCAGACTAAGCAAAAAAGGGCGCCGAGGGAGTGATCATACTCCACTCAGTAAAGCTAGTAGTACTGGATTGGACCTGGTCAAGTCATTTGGTCACAGATCTACTGTCATTCGGAAAAGAAAGGAGTGGGATGTGTATGAACCCATTGTTGATCTGCTATCTAGTGAAGAAGTCGATGCCCTTGAAGCAAAAGAAGAAAGGAACGCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

149

Amino Acids

16.92

Weight (kDa)

5.62

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	9 - 149	1.2e-18	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	258
AclWI	GGATC	1 cut(s)	98
AcuI	CTGAAG	2 cut(s)	177, 210
AcyI	GRCGYC	1 cut(s)	259
AfaI	GTAC	2 cut(s)	5, 301
AfiI	CCNNNNNNNGG	2 cut(s)	15, 161
AgsI	TTSAA	3 cut(s)	88, 98, 422
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	4 cut(s)	34, 196, 224, 293
AluI	AGCT	4 cut(s)	34, 196, 224, 293
AlwI	GGATC	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	67, 164, 310
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	3 cut(s)	67, 164, 310
BanI	GGYRCC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	1 cut(s)	314
BclI	TGATCA	1 cut(s)	271
BfaI	CTAG	2 cut(s)	294, 399
BfoI	RGCGCY	1 cut(s)	262
BglII	AGATCT	1 cut(s)	335
BmcAI	AGTACT	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	3 cut(s)	67, 164, 310
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	3 cut(s)	67, 164, 310
BmiI	GGNNCC	2 cut(s)	68, 260
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	403
BsaHI	GRCGYC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	108, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 161
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	70, 307
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	108, 262
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	15, 161
BseMII	CTCAG	1 cut(s)	298
BseNI	ACTGG	2 cut(s)	70, 307
BseRI	GAGGAG	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	2 cut(s)	80, 95
BslI	CCNNNNNNNGG	2 cut(s)	15, 161
BsmFI	GGGAC	2 cut(s)	80, 95
BsoBI	CYCGRG	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	37, 103, 271, 335, 388
BspCNI	CTCAG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	68, 260
BspPI	GGATC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	70, 307
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	108, 262
BssMI	GATC	5 cut(s)	37, 103, 271, 335, 388
BssNI	GRCGYC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	2 cut(s)	245, 284
BstF5I	GGATG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	5 cut(s)	40, 106, 274, 338, 391
BstMBI	GATC	5 cut(s)	37, 103, 271, 335, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 422
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	373
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	67, 164, 310
CsiI	ACCWGGT	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	4, 300
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	4 cut(s)	34, 196, 224, 293
CviKI_1	RGCY	4 cut(s)	34, 196, 224, 293
CviQI	GTAC	2 cut(s)	4, 300
DdeI	CTNAG	2 cut(s)	245, 284
DinI	GGCGCC	1 cut(s)	260
DpnI	GATC	5 cut(s)	39, 105, 273, 337, 390
DpnII	GATC	5 cut(s)	37, 103, 271, 335, 388
Eco47I	GGWCC	3 cut(s)	67, 164, 310
Eco57I	CTGAAG	2 cut(s)	177, 210
Eco88I	CYCGRG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	312
EgeI	GGCGCC	1 cut(s)	260
EheI	GGCGCC	1 cut(s)	260
FaeI	CATG	1 cut(s)	152
FaiI	YATR	6 cut(s)	54, 79, 150, 201, 276, 375
FaqI	GGGAC	2 cut(s)	80, 95
FatI	CATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	271
FokI	GGATG	1 cut(s)	380
FspBI	CTAG	2 cut(s)	294, 399
GlaI	GCGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	262
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	1 cut(s)	261
Hin1I	GRCGYC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	32
HpaII	CCGG	1 cut(s)	9
Hpy166II	GTNNAC	2 cut(s)	6, 49
Hpy188I	TCNGA	2 cut(s)	27, 351
Hpy188III	TCNNGA	2 cut(s)	107, 149
Hpy8I	GTNNAC	2 cut(s)	6, 49
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	4 cut(s)	134, 170, 182, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 422
HpyF3I	CTNAG	2 cut(s)	245, 284
Hsp92I	GRCGYC	1 cut(s)	259
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	259
KasI	GGCGCC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	37, 103, 271, 335, 388
LpnPI	CCDG	7 cut(s)	22, 83, 168, 180, 288, 299, 326
LweI	GCATC	1 cut(s)	403
MabI	ACCWGGT	1 cut(s)	312
MaeI	CTAG	2 cut(s)	294, 399
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	5 cut(s)	39, 105, 273, 337, 390
MboI	GATC	5 cut(s)	37, 103, 271, 335, 388
MboII	GAAGA	2 cut(s)	416, 443
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	335
MluCI	AATT	2 cut(s)	171, 183
Mly113I	GGCGCC	1 cut(s)	259
MnlI	CCTC	3 cut(s)	9, 103, 257
MseI	TTAA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	246, 422
NarI	GGCGCC	1 cut(s)	259
NdeII	GATC	5 cut(s)	37, 103, 271, 335, 388
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	2 cut(s)	68, 260
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	329
PagI	TCATGA	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	314
PluTI	GGCGCC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	68, 260
PspPI	GGNCC	3 cut(s)	67, 164, 310
PsuI	RGATCY	1 cut(s)	335
PsyI	GACNNNGTC	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	5, 301
RsaNI	GTAC	2 cut(s)	4, 300
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	5 cut(s)	37, 103, 271, 335, 388
Sau96I	GGNCC	3 cut(s)	67, 164, 310
ScaI	AGTACT	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	7 cut(s)	36, 128, 145, 198, 226, 295, 315
SexAI	ACCWGGT	1 cut(s)	312
SfaNI	GCATC	1 cut(s)	403
SfoI	GGCGCC	1 cut(s)	260
SgrAI	CRCCGGYG	1 cut(s)	8
SinI	GGWCC	3 cut(s)	67, 164, 310
Sse9I	AATT	2 cut(s)	171, 183
SspDI	GGCGCC	1 cut(s)	258
SspMI	CTAG	2 cut(s)	294, 399
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	411
TasI	AATT	2 cut(s)	171, 183
TatI	WGTACW	2 cut(s)	3, 299
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	137, 390
TspGWI	ACGGA	1 cut(s)	32
Tth111I	GACNNNGTC	1 cut(s)	314
VpaK11BI	GGWCC	3 cut(s)	67, 164, 310
XspI	CTAG	2 cut(s)	294, 399
ZrmI	AGTACT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.