Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8246763.1

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 571

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8246763.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgaaaggccacgctcccaaaggctctgtcaagaagttcagaatgccaacttcccagaatttggtcccaattcgcgtcgatttcgaagtcgaaggccagaggttcaaagacgccttcacttggaacccatctgaccctgatggagagattgccaagtttgcgaaagtaacagttagagacttgaagctgtcttcgaattacgagagagccattgttaattccattcagagccaagttgacatttttcgatcattccaaggccaagatatgtacaccggcgagaggattgttccgattaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

100

Amino Acids

11.42

Weight (kDa)

9.57

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccII	CGCG	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	61, 120, 282
AgsI	TTSAA	2 cut(s)	106, 184
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	171
AoxI	GGCC	3 cut(s)	7, 94, 259
ApoI	RAATTY	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspS9I	GGNCC	1 cut(s)	64
AsuII	TTCGAA	2 cut(s)	84, 194
AvaII	GGWCC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	183
BccI	CCATC	2 cut(s)	134, 136
BcoDI	GTCTC	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	66, 125
BpiI	GAAGAC	1 cut(s)	183
Bpu14I	TTCGAA	2 cut(s)	84, 194
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 120, 282
Bse118I	RCCGGY	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	3 cut(s)	61, 120, 282
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	9, 96, 261
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	3 cut(s)	61, 120, 282
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	3 cut(s)	9, 96, 261
Bsp119I	TTCGAA	2 cut(s)	84, 194
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	248
BspANI	GGCC	3 cut(s)	9, 96, 261
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	66, 125
BspT104I	TTCGAA	2 cut(s)	84, 194
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	248
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	111
BstAUI	TGTACA	1 cut(s)	270
BstBI	TTCGAA	2 cut(s)	84, 194
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	251
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	9, 96, 261
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	2 cut(s)	64, 119
Csp6I	GTAC	1 cut(s)	271
CviJI	RGCY	7 cut(s)	9, 24, 96, 187, 209, 231, 261
CviKI_1	RGCY	7 cut(s)	9, 24, 96, 187, 209, 231, 261
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaiI	YATR	1 cut(s)	269
FaqI	GGGAC	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	9, 96, 261
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	64, 119
Hin1I	GRCGYC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	276
Hpy166II	GTNNAC	2 cut(s)	238, 273
Hpy188I	TCNGA	4 cut(s)	41, 133, 228, 294
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	2 cut(s)	238, 273
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	86, 124
HpyCH4III	ACNGT	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	4 cut(s)	68, 110, 150, 289
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MboII	GAAGA	1 cut(s)	183
MluCI	AATT	4 cut(s)	58, 69, 196, 217
MnlI	CCTC	2 cut(s)	93, 276
MseI	TTAA	2 cut(s)	216, 297
MspI	CCGG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	48
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	248
NlaIV	GGNNCC	2 cut(s)	66, 125
NspV	TTCGAA	2 cut(s)	84, 194
PctI	GAATGC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	66, 125
PspPI	GGNCC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	216, 297
Sau3AI	GATC	1 cut(s)	248
Sau96I	GGNCC	1 cut(s)	64
SetI	ASST	2 cut(s)	104, 189
SfuI	TTCGAA	2 cut(s)	84, 194
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	64
Sse9I	AATT	4 cut(s)	58, 69, 196, 217
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	5 cut(s)	78, 84, 90, 194, 247
TasI	AATT	4 cut(s)	58, 69, 196, 217
TatI	WGTACW	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	216, 297
Tru9I	TTAA	2 cut(s)	216, 297
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.