Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Forward (+)

59787846 .. 59789256

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG412200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGATGTAAGCCATGCTCCCAAAGGATATGTCAAGAAGTTCAGAATGCCAACTTCCCATAATTTAATCCCAATTCGGGTCGATTTTGAAGTCAAAGGCCAGAGGTTCAAAGACTCCTTCACTTGGAACCCATCTGGTGGAGAGATTTGCGAAGGAAGAGGATCAAGGTTTCTAGATATCAAAGAGGATGAGTCTGAGGATGATGACATTGATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

72

Amino Acids

8.23

Weight (kDa)

5.01

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	19 - 43	1.5e-06	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	137
AclWI	GGATC	1 cut(s)	169
AfiI	CCNNNNNNNGG	3 cut(s)	76, 123, 137
AgsI	TTSAA	2 cut(s)	89, 109
AlwI	GGATC	1 cut(s)	169
AoxI	GGCC	1 cut(s)	97
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
BccI	CCATC	2 cut(s)	139, 206
BfaI	CTAG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 123, 137
BseGI	GGATG	3 cut(s)	10, 193, 205
BseLI	CCNNNNNNNGG	3 cut(s)	76, 123, 137
BseMII	CTCAG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	76, 123, 137
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	169
BssMI	GATC	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	10, 193, 205
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	10, 193, 205
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	2 cut(s)	12, 99
CviKI_1	RGCY	2 cut(s)	12, 99
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	178
FaeI	CATG	1 cut(s)	17
FaiI	YATR	3 cut(s)	15, 30, 60
FatI	CATG	1 cut(s)	13
FokI	GGATG	3 cut(s)	17, 200, 212
FspBI	CTAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	17
HinfI	GANTC	2 cut(s)	113, 191
Hpy188I	TCNGA	2 cut(s)	44, 196
Hpy188III	TCNNGA	2 cut(s)	34, 173
HpyAV	CCTTC	2 cut(s)	127, 146
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	2 cut(s)	113, 120
MaeI	CTAG	1 cut(s)	173
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	1 cut(s)	168
MluCI	AATT	2 cut(s)	61, 72
MlyI	GAGTC	2 cut(s)	107, 200
MnlI	CCTC	4 cut(s)	96, 152, 178, 190
MseI	TTAA	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	51
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	128
PctI	GAATGC	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	137
PleI	GAGTC	2 cut(s)	107, 199
PpsI	GAGTC	2 cut(s)	107, 199
PspN4I	GGNNCC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	161
SchI	GAGTC	2 cut(s)	107, 200
SetI	ASST	2 cut(s)	107, 170
SgeI	CNNG	8 cut(s)	26, 46, 89, 112, 135, 147, 177, 185
Sse9I	AATT	2 cut(s)	61, 72
SspMI	CTAG	1 cut(s)	173
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	61, 72
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	137
XbaI	TCTAGA	1 cut(s)	172
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.