Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Reverse (-)

59451364 .. 59454422

Gene Structure 3059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAAGGCCACGCTCCCAAAGGCTCTGTCAAGAAGTTCAGAATGCCAACTTCCCAGAATTTGGTCCCAATTCGCGTCGATTTCGAAGTCGAAGGCCAGAGGTTCAAAGACGCCTTCACTTGGAACCCATCTGACCCTGATGGAGAGATTGCCAAGTTTGCGAAAGTAACAGTTAGAGACTTGAAGCTGTCTTCGAATTACGAGAGAGCCATTGTTAATTCCATTCAGAGCCAAGTTGATATTTTTCGATCATTCCAAGGCCAAGATATGTACACCGGCGAGAGGATTGTTCCGATTAAGCTTGATCTCCGTGTAAACCATACTCTCATTAGGGACCAGTTTTTATGGGACTTGAACAACTTTGAAAGTGATCCCGAGGAGTTTGCTAAAACCTTGTGTGCAGATTTAGGTGTTCATGACCCTGAAGTTGGTCCTGCAATTGCTTTTGCAATTAGAGAACAGCTGTATGAGGTTAGATTTTGTTGCTTCTTTTGTACCTCACATGAGGTACAATGTATTTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

175

Amino Acids

20.15

Weight (kDa)

5.41

Isoelectric Point (pI)

25.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	18 - 82	1.5e-14	SNF5 / SMARCB1 / INI1
SNF5	PF04855	97 - 156	2.8e-14	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccII	CGCG	1 cut(s)	75
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	3 cut(s)	272, 496, 510
AfiI	CCNNNNNNNGG	4 cut(s)	61, 120, 282, 428
AgsI	TTSAA	4 cut(s)	106, 184, 355, 365
AluBI	AGCT	3 cut(s)	187, 301, 463
AluI	AGCT	3 cut(s)	187, 301, 463
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	3 cut(s)	7, 94, 259
ApoI	RAATTY	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspS9I	GGNCC	3 cut(s)	64, 334, 431
AsuII	TTCGAA	2 cut(s)	84, 194
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	3 cut(s)	64, 334, 431
BbsI	GAAGAC	1 cut(s)	183
BccI	CCATC	2 cut(s)	134, 136
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BcoDI	GTCTC	1 cut(s)	171
Bme18I	GGWCC	3 cut(s)	64, 334, 431
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	3 cut(s)	64, 334, 431
BmiI	GGNNCC	3 cut(s)	66, 125, 335
BpiI	GAAGAC	1 cut(s)	183
Bpu14I	TTCGAA	2 cut(s)	84, 194
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	256, 375
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 120, 282, 428
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	256, 375
BseLI	CCNNNNNNNGG	4 cut(s)	61, 120, 282, 428
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	9, 96, 261
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	3 cut(s)	50, 347, 362
BslI	CCNNNNNNNGG	4 cut(s)	61, 120, 282, 428
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	3 cut(s)	50, 347, 362
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	3 cut(s)	9, 96, 261
BsoBI	CYCGRG	1 cut(s)	374
Bsp119I	TTCGAA	2 cut(s)	84, 194
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	248, 304, 370
BspANI	GGCC	3 cut(s)	9, 96, 261
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	66, 125, 335
BspPI	GGATC	1 cut(s)	365
BspT104I	TTCGAA	2 cut(s)	84, 194
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	256, 375
BssMI	GATC	3 cut(s)	248, 304, 370
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	111
BstAUI	TGTACA	1 cut(s)	270
BstBI	TTCGAA	2 cut(s)	84, 194
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	3 cut(s)	251, 307, 373
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	3 cut(s)	248, 304, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	9, 96, 261
CciI	TCATGA	1 cut(s)	415
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	64, 334, 431
CseI	GACGC	2 cut(s)	64, 119
Csp6I	GTAC	3 cut(s)	271, 495, 509
CviAII	CATG	2 cut(s)	416, 503
CviJI	RGCY	9 cut(s)	9, 24, 96, 187, 209, 231, 261, 301, 463
CviKI_1	RGCY	9 cut(s)	9, 24, 96, 187, 209, 231, 261, 301, 463
CviQI	GTAC	3 cut(s)	271, 495, 509
DpnI	GATC	3 cut(s)	250, 306, 372
DpnII	GATC	3 cut(s)	248, 304, 370
Eco130I	CCWWGG	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	64, 334, 431
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	419, 506
FaiI	YATR	6 cut(s)	269, 321, 346, 417, 468, 504
FaqI	GGGAC	3 cut(s)	50, 347, 362
FatI	CATG	2 cut(s)	415, 502
HaeIII	GGCC	3 cut(s)	9, 96, 261
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	64, 119
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	419, 506
HindIII	AAGCTT	1 cut(s)	299
HpaII	CCGG	1 cut(s)	276
Hpy166II	GTNNAC	2 cut(s)	273, 316
Hpy188I	TCNGA	4 cut(s)	41, 133, 228, 294
Hpy188III	TCNNGA	3 cut(s)	31, 374, 416
Hpy8I	GTNNAC	2 cut(s)	273, 316
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	86, 124
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	3 cut(s)	401, 437, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	419, 506
Kzo9I	GATC	3 cut(s)	248, 304, 370
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	7 cut(s)	68, 110, 150, 289, 350, 435, 447
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	3 cut(s)	250, 306, 372
MboI	GATC	3 cut(s)	248, 304, 370
MboII	GAAGA	1 cut(s)	183
MfeI	CAATTG	1 cut(s)	438
MluCI	AATT	6 cut(s)	58, 69, 196, 217, 438, 450
MnlI	CCTC	6 cut(s)	93, 276, 370, 463, 499, 508
MseI	TTAA	3 cut(s)	216, 297, 526
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	48
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	3 cut(s)	248, 304, 370
NlaIII	CATG	2 cut(s)	419, 506
NlaIV	GGNNCC	3 cut(s)	66, 125, 335
NspV	TTCGAA	2 cut(s)	84, 194
PagI	TCATGA	1 cut(s)	415
PctI	GAATGC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	66, 125, 335
PspPI	GGNCC	3 cut(s)	64, 334, 431
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	3 cut(s)	272, 496, 510
RsaNI	GTAC	3 cut(s)	271, 495, 509
SaqAI	TTAA	3 cut(s)	216, 297, 526
Sau3AI	GATC	3 cut(s)	248, 304, 370
Sau96I	GGNCC	3 cut(s)	64, 334, 431
SetI	ASST	9 cut(s)	104, 189, 303, 395, 412, 465, 474, 500, 510
SfuI	TTCGAA	2 cut(s)	84, 194
SgrAI	CRCCGGYG	1 cut(s)	275
SinI	GGWCC	3 cut(s)	64, 334, 431
Sse9I	AATT	6 cut(s)	58, 69, 196, 217, 438, 450
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	6 cut(s)	78, 84, 90, 194, 247, 522
TasI	AATT	6 cut(s)	58, 69, 196, 217, 438, 450
TatI	WGTACW	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	216, 297, 526
Tru9I	TTAA	3 cut(s)	216, 297, 526
TspDTI	ATGAA	2 cut(s)	17, 404
TspGWI	ACGGA	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	3 cut(s)	64, 334, 431
XapI	RAATTY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.