Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007955

Physical Location & Seq

Genomic Coordinates Forward (+)

8115152 .. 8117248

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11690.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGACTCGAACAACTTCGAAACTGATCACAAAGAGTTTGCTAAAACCTTCTGCGCAGATTTAGGTATTCAAGACCCTGAAGTTGGTCCGGCAATTGCCTTTTCAATTAGAGAACAACTGTATGAGATTGTAGTTCAAAATGTAGCTTCAGTAAGAGAAACCAGAATAAGCAAGAAGGGACGCCGTGGAGTTGAGTATACTCCAGTCAGTAAAGTCAGTAGTACTGGATTGGACCTGGTGAAGTTATTTGGTCACAGATCGAGTGTTGTTTGGAAAAGAAAGGAGCGGTATGTATACAAGACCATCGTTGGTCTTCTATCAACCGTGGAAGTGGAGGCCCTTGAAGCCAAAGAAGAAAGGATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

123

Amino Acids

13.79

Weight (kDa)

7.84

Isoelectric Point (pI)

28.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17590 AT3G17590 AT3G17590
fragaria_vesca	FvH4_4g21770
malus_domestica	MD13G1137100.v1.1
prunus_persica	Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1 Prupe.1G208100_v2.0.a1
pyrus_communis	pycom13g11940 pycom16g11690
rosa_chinensis	RchiOBHm_Chr4g0428001
rosa_laevigata	RLG00000007192
rosa_multiflora	Rmu_co8246763.1_g000001 Rmu_sc0000066.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369670
rosa_rugosa	Rorug04G0220900
rosa_samantha	Rh2DG412200 Rh4AG278400 Rh4BG283900 Rh4CG299500 Rh4DG281100
rosa_wichuraiana	Rw4G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	286
AccI	GTMKAC	2 cut(s)	197, 294
AciI	CCGC	1 cut(s)	286
AcuI	CTGAAG	2 cut(s)	99, 132
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	71, 105, 137, 344
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
AoxI	GGCC	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	3 cut(s)	86, 232, 337
AsuHPI	GGTGA	1 cut(s)	250
AsuII	TTCGAA	1 cut(s)	18
AvaII	GGWCC	2 cut(s)	86, 232
BbsI	GAAGAC	1 cut(s)	305
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	25
BmcAI	AGTACT	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	86, 232
BmgT120I	GGNCC	3 cut(s)	86, 232, 337
BmrFI	CCNGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	184, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	203, 229
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	184, 324
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	203, 229
BshFI	GGCC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	25, 257
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	338
BspT104I	TTCGAA	1 cut(s)	18
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	203, 229
BssECI	CCNNGG	2 cut(s)	184, 324
BssMI	GATC	2 cut(s)	25, 257
BssNAI	GTATAC	2 cut(s)	198, 295
BssNI	GRCGYC	1 cut(s)	181
Bst1107I	GTATAC	2 cut(s)	198, 295
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	120, 325
BstACI	GRCGYC	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	18
BstDSI	CCRYGG	2 cut(s)	184, 324
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	28, 260
BstMBI	GATC	2 cut(s)	25, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	305
BstZ17I	GTATAC	2 cut(s)	198, 295
BsuRI	GGCC	1 cut(s)	338
BtgI	CCRYGG	2 cut(s)	184, 324
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	3 cut(s)	86, 232, 337
CseI	GACGC	1 cut(s)	189
CsiI	ACCWGGT	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	222
CviJI	RGCY	3 cut(s)	146, 338, 347
CviKI_1	RGCY	3 cut(s)	146, 338, 347
CviQI	GTAC	1 cut(s)	222
DpnI	GATC	2 cut(s)	27, 259
DpnII	GATC	2 cut(s)	25, 257
Eco47I	GGWCC	2 cut(s)	86, 232
Eco57I	CTGAAG	2 cut(s)	99, 132
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	234
FaiI	YATR	4 cut(s)	123, 198, 291, 295
FalI	AAGNNNNNCTT	1 cut(s)	349
FaqI	GGGAC	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	25
FblI	GTMKAC	2 cut(s)	197, 294
FspI	TGCGCA	1 cut(s)	55
GlaI	GCGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	198, 295
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	2 cut(s)	198, 295
HpyAV	CCTTC	2 cut(s)	58, 169
HpyCH4III	ACNGT	2 cut(s)	120, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
Hsp92I	GRCGYC	1 cut(s)	181
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	25, 257
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	7 cut(s)	90, 102, 175, 210, 216, 221, 248
MabI	ACCWGGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	2 cut(s)	27, 259
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	2 cut(s)	25, 257
MboII	GAAGA	2 cut(s)	305, 365
MfeI	CAATTG	1 cut(s)	93
MluCI	AATT	2 cut(s)	93, 105
MnlI	CCTC	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	14
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	2 cut(s)	25, 257
NmuCI	GTSAC	1 cut(s)	251
NsbI	TGCGCA	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspPI	GGNCC	3 cut(s)	86, 232, 337
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	25, 257
Sau96I	GGNCC	3 cut(s)	86, 232, 337
ScaI	AGTACT	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	4 cut(s)	50, 67, 148, 237
SexAI	ACCWGGT	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	18
SinI	GGWCC	2 cut(s)	86, 232
Sse9I	AATT	2 cut(s)	93, 105
SsiI	CCGC	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	120, 325
TaqI	TCGA	3 cut(s)	8, 18, 260
TasI	AATT	2 cut(s)	93, 105
TatI	WGTACW	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	86, 232
XmiI	GTMKAC	2 cut(s)	197, 294
XmnI	GAANNNNTTC	1 cut(s)	14
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.