AT3G17712

Protein NRDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010115
Physical Location & Seq
Forward (+)
6056870 .. 6060330
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17712.1

Sequence Viewer

Length: 2385 bp
ATGTCGAATACACCAGAAGACGGCGACGGAGCACAGGTAACTACAGGCGGCTTGTTCCCCGTCTTCCCTACTTCGGCGAACTCCATCTCAGCTATTTCGAATGCTCCTCAATGGCTTCGCAACGCTAGCTTCACTACGGATCTCTCTGTCATCAACGCTGCCGCTTCGACGGCTCCTTCCTCATCCGAGGTCGAGGCTGGAGACGACGAAGATGAAGAAGGAGGAGCTGATGGAAATATCGGTTTAGCTAATCAGGCTAGGGTTTATAATTTGGTTGAAGAAGAAGGGTCTTTGGAGTCTGATGACGACAAGGTAAAGAGGAAGCGAGAGAAAAAGAAGAAACGGAAGAGTGATAATGCTTCGGATGAATCTCGTTCTCGTAAATCTGATGAATACTATTCGAAACCTGTGAAGGATTATTACTTGGACACTCGTCCTGATCCAGATAATCTGGCTTATGGCTCTATTTACAGGATGAATGTTCCTCGTTATAAACTTGACAATTCTCAGAGAGTTCCAGGGTCAGGTTCTCTGAGGTTTTATTTGCGGAATCGACGTAGTTCTATGCTTGACACAGAGATTGATATTGATTCTTTGGAGGGGAGAGCAAAGTCTGATACCCGATACTGGTATGCAAAACATGCTGCCATGGAACGCAACAAGAATTTCAAGCGTATTCGTTTATCTGCTGCAAGTGAAGCTGTGGATTCTTCCTTTGATAATTTCATTCCACTGGAGGAAGACGTGACTGTTCCAGAAAGTGACGAAGAAGATGTTTTATCAAAGGACTCAATGATTGGAGCATCATGGGAGGATGAAGTGCTGAATAAAACACGGGAGTTCAACAGAGTGACGAGAGAACGTCCCCATGATGCAAAGGCATGGCTGGCATTTGCTGATTTTCAAGACAAGGTTTCAAGTATGCAATCTCAGAAAGGAGTTCGCCTGCAGACTTTAGAGAAAAAGATTAGTATACTTGAGAAGGCTTTTGAGCTGAACCCAGATAGCGAAGAACTGTTGCTTGCTCTGCTCAAGGCATACCGAAGCAGAGACAACGCTGATGTACTAATCAGTAGGTGGGAAAAGGCACTTATGCAGAATTCCGCAAGCTACAAATTATGGAGGGAGTTTTTATGTGTTGTTCAAGGGGAGTTCTCCAGATTCAAAGTATCAGAAGTGAGGAGGCTGTATTCTTATGCGATCCAGGCTCTTTCTTCTGCTTGCAGCAAGCGACATAGGCAGGTGGATACAACATCTGAACCATTGGATTCTGCTGCCATCCAACAGGAACTCGTTCTAGTCGATATGCTAGTTAGCCTCTGCAGGTTTGAGTGGCAGGCTGGTTACCAGGAGCTGGCCACAGCGTTACTTCAAGCCGAAGTGGAATTTAGCATCTTTTCTCCATCTTTGTTGCTAACTGAACAGAGTAAATTACGACTGTTTGAGCACTTTTGGAGCAGTAATGGTGCTAGAGTTGGAGAAGAAGGAGCTTTTGGATGGCTATTGTGGCTGGAGAAAGAGGAGGAAAACAGGCAGAAAATTTTGAAAGAAGAATCCTCTGATGACAATGAAGTAGGTGGTTGGACAGGTTGGACAGAACAGGTCTCAGGTAGAAATGGAGATGATCTTGCTTCAGCTAACACTGGAGAGGTCGATGTTGATCGGAAGGGTCTGGATGAGGAAATGGAAGACGAGAATAGCAAACCTGAAGATGACACCGAAGCTATGCTGAAATTATTGGGCATTGATGTCAATACTGCGGCCAGTGATGAGGTTAAAGATACATCAACTTGGGTTGAATGGTTTGAAGAAGAGGTTTCTCGAGATCACAGTCAATGGATGCCTACTCGGAAAGCTGGTGAATTCTCCAGTGTTGAGGGAATGGGTGAGGGAGAAGATGAAGAGCAACTCTCAAGTGTTGTACTATATGAAGATATAAATGGATATCTATTTTCCTTACGTTCAAAGGAGGCCCGCTTATCTCTGGTATACCAGTTCATTGATTTCTTCGGTGCACATATCTCCCCCATGGACTTCCAGCAACAGTTGTCGTGGAGTGAGAAAATAAGTAGCCTTGAAACATTGTCAGATTCCATGTTAGAAAACTTGAGAAGTGTTCATGAATGTTTGTCGAAATCAGATAGTGCCAACTGTTTCAGCTTGGGATCTCTTCTAGGTGGCAGCTGTGACTTATCTATGCGGACTGAGATGATGAAGTTTCTCCGCAATGCCATCTTGCTTTGTCTAAATGTTTTCCCGCAAAATTACATTCCCGAAGAAGCTGTGCTTGTTACAGAAGAACTATTTGTAACAAATATGAAAACATGTGAGGTACGTAGCAACTATGCCATGCCAAGCTTTGGCCAAACGTCTCCTGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NRDE-2

Protein Analysis

794

Amino Acids

89.8

Weight (kDa)

4.65

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NRDE-2 PF08424 277 - 674 3.3e-78 NRDE-2, necessary for RNA interference
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17712 AT3G17712 AT3G17712 AT3G17740
fragaria_vesca FvH4_5g17940 FvH4_5g17940 FvH4_5g17940
malus_domestica MD14G1242200.v1.1
prunus_persica Prupe.5G239800_v2.0.a1
pyrus_communis pycom14g20360
rosa_chinensis RchiOBHm_Chr7g0177661
rosa_laevigata RLG00000005516
rosa_multiflora Rmu_sc0004449.1_g000002 Rmu_ssc0000236.1_g000002
rosa_roxburghii Rroxscaffold_3G00275680
rosa_rugosa Rorug06G0408300
rosa_samantha Rh7AG007800 Rh7BG007700 Rh7CG008200 Rh7DG007900
rosa_wichuraiana Rw7G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 267, 492
AarI CACCTGC 1 cut(s) 1231
Acc36I ACCTGC 2 cut(s) 1231, 1314
AccB7I CCANNNNNTGG 2 cut(s) 1354, 2360
AccI GTMKAC 2 cut(s) 973, 1989
AciI CCGC 9 cut(s) 48, 162, 547, 1104, 1760, 1975, 2200, 2224, 2258
AclWI GGATC 4 cut(s) 147, 434, 1195, 2173
AcoI YGGCCR 3 cut(s) 1356, 1761, 2362
AcsI RAATTY 5 cut(s) 664, 1099, 1385, 1539, 1862
AcuI CTGAAG 2 cut(s) 1617, 1728
AfaI GTAC 3 cut(s) 1065, 1923, 2334
AfiI CCNNNNNNNGG 6 cut(s) 20, 73, 524, 627, 1354, 2360
AflIII ACRYGT 1 cut(s) 2324
AjiI CACGTC 1 cut(s) 745
AjnI CCWGG 3 cut(s) 517, 1203, 1347
AjuI GAANNNNNNNTTGG 2 cut(s) 1476, 1508
Alw21I GWGCWC 3 cut(s) 34, 1449, 2017
Alw26I GTCTC 4 cut(s) 195, 1044, 1609, 2376
Alw44I GTGCAC 1 cut(s) 2013
AlwI GGATC 4 cut(s) 147, 434, 1195, 2173
AlwNI CAGNNNCTG 1 cut(s) 1354
Ama87I CYCGRG 1 cut(s) 1821
AoxI GGCC 4 cut(s) 1356, 1761, 1971, 2362
ApaLI GTGCAC 1 cut(s) 2013
ApeKI GCWGC 6 cut(s) 158, 644, 689, 1224, 1274, 2181
ApoI RAATTY 5 cut(s) 664, 1099, 1385, 1539, 1862
Asp700I GAANNNNTTC 1 cut(s) 1293
AspS9I GGNCC 1 cut(s) 1972
AsuHPI GGTGA 2 cut(s) 1871, 1898
AsuII TTCGAA 2 cut(s) 98, 401
AsuNHI GCTAGC 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 1821
BaeGI GKGCMC 1 cut(s) 2017
BalI TGGCCA 2 cut(s) 1358, 2364
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
BbsI GAAGAC 4 cut(s) 24, 55, 747, 1695
Bbv12I GWGCWC 3 cut(s) 34, 1449, 2017
BbvI GCAGC 6 cut(s) 145, 631, 676, 1236, 1261, 2193
BccI CCATC 6 cut(s) 92, 224, 1286, 1411, 1491, 2240
BceAI ACGGC 2 cut(s) 37, 186
BciT130I CCWGG 3 cut(s) 519, 1205, 1349
BciVI GTATCC 1 cut(s) 1240
BcoDI GTCTC 4 cut(s) 195, 1044, 1609, 2376
BfaI CTAG 6 cut(s) 126, 258, 1298, 1310, 1470, 2174
BfmI CTRYAG 3 cut(s) 42, 947, 1321
BfuAI ACCTGC 2 cut(s) 1231, 1314
BfuI GTATCC 1 cut(s) 1240
BisI GCNGC 9 cut(s) 49, 159, 162, 645, 690, 1225, 1275, 1761, 2182
BlsI GCNGC 9 cut(s) 50, 160, 163, 646, 691, 1226, 1276, 1762, 2183
Bme1390I CCNGG 3 cut(s) 519, 1205, 1349
BmeT110I CYCGRG 1 cut(s) 1821
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 1972
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 3 cut(s) 519, 1205, 1349
BmsI GCATC 4 cut(s) 812, 862, 1401, 1830
BmtI GCTAGC 1 cut(s) 129
BoxI GACNNNNGTC 1 cut(s) 432
BpiI GAAGAC 4 cut(s) 24, 55, 747, 1695
BplI GAGNNNNNCTC 2 cut(s) 1895, 1927
BpmI CTGGAG 6 cut(s) 219, 755, 1141, 1532, 1665, 1852
Bpu14I TTCGAA 2 cut(s) 98, 401
BpuEI CTTGAG 4 cut(s) 998, 1016, 1897, 2128
BsaAI YACGTR 1 cut(s) 2336
BsaBI GATNNNNATC 1 cut(s) 1659
BsaI GGTCTC 1 cut(s) 1609
BsaJI CCNNGG 4 cut(s) 186, 518, 648, 2028
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 6 cut(s) 20, 73, 524, 627, 1354, 2360
Bse1I ACTGG 6 cut(s) 632, 738, 1648, 1764, 1869, 1993
Bse3DI GCAATG 1 cut(s) 2233
Bse8I GATNNNNATC 1 cut(s) 1659
BseBI CCWGG 3 cut(s) 519, 1205, 1349
BseDI CCNNGG 4 cut(s) 186, 518, 648, 2028
BseGI GGATG 8 cut(s) 182, 370, 480, 820, 1278, 1502, 1681, 1845
BseJI GATNNNNATC 1 cut(s) 1659
BseLI CCNNNNNNNGG 6 cut(s) 20, 73, 524, 627, 1354, 2360
BseMI GCAATG 1 cut(s) 2233
BseMII CTCAG 6 cut(s) 102, 521, 524, 944, 1620, 2196
BseNI ACTGG 6 cut(s) 632, 738, 1648, 1764, 1869, 1993
BseRI GAGGAG 4 cut(s) 96, 237, 1195, 1535
BseSI GKGCMC 1 cut(s) 2017
BseXI GCAGC 6 cut(s) 145, 631, 676, 1236, 1261, 2193
BshFI GGCC 4 cut(s) 1358, 1763, 1973, 2364
BsiHKAI GWGCWC 3 cut(s) 34, 1449, 2017
BsiHKCI CYCGRG 1 cut(s) 1821
BslFI GGGAC 1 cut(s) 849
BslI CCNNNNNNNGG 6 cut(s) 20, 73, 524, 627, 1354, 2360
BsmAI GTCTC 4 cut(s) 195, 1044, 1609, 2376
BsmBI CGTCTC 2 cut(s) 195, 2376
BsmFI GGGAC 1 cut(s) 849
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 4 cut(s) 1358, 1763, 1973, 2364
Bso31I GGTCTC 1 cut(s) 1609
BsoBI CYCGRG 1 cut(s) 1821
Bsp119I TTCGAA 2 cut(s) 98, 401
Bsp1286I GDGCHC 3 cut(s) 34, 1449, 2017
Bsp143I GATC 7 cut(s) 139, 439, 1200, 1624, 1660, 1825, 2165
Bsp19I CCATGG 2 cut(s) 648, 2028
BspACI CCGC 9 cut(s) 48, 162, 547, 1104, 1760, 1975, 2200, 2224, 2258
BspANI GGCC 4 cut(s) 1358, 1763, 1973, 2364
BspCNI CTCAG 6 cut(s) 101, 520, 525, 943, 1619, 2197
BspHI TCATGA 1 cut(s) 2119
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 2 cut(s) 951, 1325
BspMI ACCTGC 2 cut(s) 1231, 1314
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 4 cut(s) 147, 434, 1195, 2173
BspQI GCTCTTC 1 cut(s) 1896
BspT104I TTCGAA 2 cut(s) 98, 401
BspTNI GGTCTC 1 cut(s) 1609
BsrDI GCAATG 1 cut(s) 2233
BsrI ACTGG 6 cut(s) 632, 738, 1648, 1764, 1869, 1993
BssECI CCNNGG 4 cut(s) 186, 518, 648, 2028
BssMI GATC 7 cut(s) 139, 439, 1200, 1624, 1660, 1825, 2165
BssNAI GTATAC 2 cut(s) 974, 1990
BssT1I CCWWGG 2 cut(s) 648, 2028
Bst1107I GTATAC 2 cut(s) 974, 1990
Bst2UI CCWGG 3 cut(s) 519, 1205, 1349
Bst4CI ACNGT 6 cut(s) 751, 1017, 1440, 1832, 2046, 2153
Bst6I CTCTTC 4 cut(s) 341, 1806, 1896, 2175
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 2336
BstBI TTCGAA 2 cut(s) 98, 401
BstDEI CTNAG 6 cut(s) 88, 507, 533, 930, 1606, 2205
BstDSI CCRYGG 2 cut(s) 648, 2028
BstEII GGTNACC 1 cut(s) 1343
BstF5I GGATG 8 cut(s) 182, 370, 480, 820, 1278, 1502, 1681, 1845
BstKTI GATC 7 cut(s) 142, 442, 1203, 1627, 1663, 1828, 2168
BstMAI GTCTC 4 cut(s) 195, 1044, 1609, 2376
BstMBI GATC 7 cut(s) 139, 439, 1200, 1624, 1660, 1825, 2165
BstNI CCWGG 3 cut(s) 519, 1205, 1349
BstNSI RCATGY 2 cut(s) 644, 2328
BstPAI GACNNNNGTC 1 cut(s) 432
BstPI GGTNACC 1 cut(s) 1343
BstSCI CCNGG 3 cut(s) 517, 1203, 1347
BstSFI CTRYAG 3 cut(s) 42, 947, 1321
BstSLI GKGCMC 1 cut(s) 2017
BstSNI TACGTA 1 cut(s) 2336
BstV1I GCAGC 6 cut(s) 145, 631, 676, 1236, 1261, 2193
BstV2I GAAGAC 4 cut(s) 24, 55, 747, 1695
BstX2I RGATCY 2 cut(s) 139, 2165
BstYI RGATCY 2 cut(s) 139, 2165
BstZ17I GTATAC 2 cut(s) 974, 1990
BsuI GTATCC 1 cut(s) 1240
BsuRI GGCC 4 cut(s) 1358, 1763, 1973, 2364
BtgI CCRYGG 2 cut(s) 648, 2028
BtrI CACGTC 1 cut(s) 745
BtsCI GGATG 8 cut(s) 182, 370, 480, 820, 1278, 1502, 1681, 1845
BtsIMutI CAGTG 4 cut(s) 731, 1641, 1771, 1876
BveI ACCTGC 2 cut(s) 1231, 1314
CaiI CAGNNNCTG 1 cut(s) 1354
CciI TCATGA 1 cut(s) 2119
Cfr13I GGNCC 1 cut(s) 1972
Csp6I GTAC 3 cut(s) 1064, 1922, 2333
CviQI GTAC 3 cut(s) 1064, 1922, 2333
DdeI CTNAG 6 cut(s) 88, 507, 533, 930, 1606, 2205
DpnI GATC 7 cut(s) 141, 441, 1202, 1626, 1662, 1827, 2167
DpnII GATC 7 cut(s) 139, 439, 1200, 1624, 1660, 1825, 2165
EaeI YGGCCR 3 cut(s) 1356, 1761, 2362
Eam1104I CTCTTC 4 cut(s) 341, 1806, 1896, 2175
EarI CTCTTC 4 cut(s) 341, 1806, 1896, 2175
Eco105I TACGTA 1 cut(s) 2336
Eco130I CCWWGG 2 cut(s) 648, 2028
Eco31I GGTCTC 1 cut(s) 1609
Eco32I GATATC 1 cut(s) 1946
Eco57I CTGAAG 2 cut(s) 1617, 1728
Eco88I CYCGRG 1 cut(s) 1821
Eco91I GGTNACC 1 cut(s) 1343
EcoO65I GGTNACC 1 cut(s) 1343
EcoRI GAATTC 2 cut(s) 1099, 1862
EcoRII CCWGG 3 cut(s) 517, 1203, 1347
EcoRV GATATC 1 cut(s) 1946
EcoT14I CCWWGG 2 cut(s) 648, 2028
ErhI CCWWGG 2 cut(s) 648, 2028
Esp3I CGTCTC 2 cut(s) 195, 2376
FalI AAGNNNNNCTT 2 cut(s) 2271, 2303
FaqI GGGAC 1 cut(s) 849
FauI CCCGC 2 cut(s) 1982, 2265
FblI GTMKAC 2 cut(s) 973, 1989
Fnu4HI GCNGC 9 cut(s) 49, 159, 162, 645, 690, 1225, 1275, 1761, 2182
FokI GGATG 8 cut(s) 169, 377, 487, 827, 1265, 1509, 1688, 1852
Fsp4HI GCNGC 9 cut(s) 49, 159, 162, 645, 690, 1225, 1275, 1761, 2182
FspBI CTAG 6 cut(s) 126, 258, 1298, 1310, 1470, 2174
GluI GCNGC 9 cut(s) 49, 159, 162, 645, 690, 1225, 1275, 1761, 2182
GsuI CTGGAG 6 cut(s) 219, 755, 1141, 1532, 1665, 1852
HaeIII GGCC 4 cut(s) 1358, 1763, 1973, 2364
HindIII AAGCTT 1 cut(s) 2356
HphI GGTGA 2 cut(s) 1871, 1898
Hpy166II GTNNAC 3 cut(s) 974, 1990, 2015
Hpy8I GTNNAC 3 cut(s) 974, 1990, 2015
Hpy99I CGWCG 4 cut(s) 29, 172, 209, 558
HpyAV CCTTC 7 cut(s) 186, 212, 278, 406, 976, 1478, 1660
HpyCH4III ACNGT 6 cut(s) 751, 1017, 1440, 1832, 2046, 2153
HpyCH4IV ACGT 6 cut(s) 556, 744, 862, 1960, 2335, 2369
HpyCH4V TGCA 9 cut(s) 635, 692, 875, 925, 949, 1096, 1224, 1323, 2015
HpyF3I CTNAG 6 cut(s) 88, 507, 533, 930, 1606, 2205
HpySE526I ACGT 6 cut(s) 556, 744, 862, 1960, 2335, 2369
Kzo9I GATC 7 cut(s) 139, 439, 1200, 1624, 1660, 1825, 2165
LguI GCTCTTC 1 cut(s) 1896
LmnI GCTCC 8 cut(s) 29, 109, 178, 224, 800, 1351, 1455, 1487
Lsp1109I GCAGC 6 cut(s) 145, 631, 676, 1236, 1261, 2193
LweI GCATC 4 cut(s) 812, 862, 1401, 1830
MaeI CTAG 6 cut(s) 126, 258, 1298, 1310, 1470, 2174
MaeII ACGT 6 cut(s) 556, 744, 862, 1960, 2335, 2369
MaeIII GTNAC 9 cut(s) 37, 745, 761, 850, 1343, 1365, 2186, 2290, 2308
MalI GATC 7 cut(s) 141, 441, 1202, 1626, 1662, 1827, 2167
MboI GATC 7 cut(s) 139, 439, 1200, 1624, 1660, 1825, 2165
MflI RGATCY 2 cut(s) 139, 2165
MhlI GDGCHC 3 cut(s) 34, 1449, 2017
MlsI TGGCCA 2 cut(s) 1358, 2364
MluNI TGGCCA 2 cut(s) 1358, 2364
MlyI GAGTC 2 cut(s) 305, 782
MmeI TCCRAC 4 cut(s) 1306, 1456, 1562, 1571
Mox20I TGGCCA 2 cut(s) 1358, 2364
MroXI GAANNNNTTC 1 cut(s) 1293
MscI TGGCCA 2 cut(s) 1358, 2364
MseI TTAA 1 cut(s) 1776
Msp20I TGGCCA 2 cut(s) 1358, 2364
MspA1I CMGCKG 1 cut(s) 2184
MspR9I CCNGG 3 cut(s) 519, 1205, 1349
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 3 cut(s) 519, 1205, 1349
NcoI CCATGG 2 cut(s) 648, 2028
NdeII GATC 7 cut(s) 139, 439, 1200, 1624, 1660, 1825, 2165
NheI GCTAGC 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 4 cut(s) 745, 761, 850, 2186
NspI RCATGY 2 cut(s) 644, 2328
NspV TTCGAA 2 cut(s) 98, 401
PaeR7I CTCGAG 1 cut(s) 1821
PagI TCATGA 1 cut(s) 2119
PaqCI CACCTGC 1 cut(s) 1231
PciI ACATGT 1 cut(s) 2324
PciSI GCTCTTC 1 cut(s) 1896
PcsI WCGNNNNNNNCGW 1 cut(s) 1299
PctI GAATGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 1293
PfeI GAWTC 8 cut(s) 368, 550, 590, 707, 1161, 1268, 1553, 2090
PflMI CCANNNNNTGG 2 cut(s) 1354, 2360
PkrI GCNGC 9 cut(s) 50, 160, 163, 646, 691, 1226, 1276, 1762, 2183
PleI GAGTC 2 cut(s) 304, 782
PpsI GAGTC 2 cut(s) 304, 782
Ppu21I YACGTR 1 cut(s) 2336
PscI ACATGT 1 cut(s) 2324
PshAI GACNNNNGTC 1 cut(s) 432
PsiI TTATAA 2 cut(s) 267, 492
Psp6I CCWGG 3 cut(s) 517, 1203, 1347
PspEI GGTNACC 1 cut(s) 1343
PspGI CCWGG 3 cut(s) 517, 1203, 1347
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 1972
PstI CTGCAG 2 cut(s) 951, 1325
PstNI CAGNNNCTG 1 cut(s) 1354
PsuI RGATCY 2 cut(s) 139, 2165
PvuII CAGCTG 1 cut(s) 2184
RsaI GTAC 3 cut(s) 1065, 1923, 2334
RsaNI GTAC 3 cut(s) 1064, 1922, 2333
SapI GCTCTTC 1 cut(s) 1896
SaqAI TTAA 1 cut(s) 1776
SatI GCNGC 9 cut(s) 49, 159, 162, 645, 690, 1225, 1275, 1761, 2182
Sau3AI GATC 7 cut(s) 139, 439, 1200, 1624, 1660, 1825, 2165
Sau96I GGNCC 1 cut(s) 1972
SchI GAGTC 2 cut(s) 305, 782
ScrFI CCNGG 3 cut(s) 519, 1205, 1349
SduI GDGCHC 3 cut(s) 34, 1449, 2017
SfaNI GCATC 4 cut(s) 812, 862, 1401, 1830
SfcI CTRYAG 3 cut(s) 42, 947, 1321
Sfr274I CTCGAG 1 cut(s) 1821
SfuI TTCGAA 2 cut(s) 98, 401
SlaI CTCGAG 1 cut(s) 1821
SmlI CTYRAG 5 cut(s) 977, 1031, 1821, 1912, 2107
SmoI CTYRAG 5 cut(s) 977, 1031, 1821, 1912, 2107
SnaBI TACGTA 1 cut(s) 2336
SsiI CCGC 9 cut(s) 48, 162, 547, 1104, 1760, 1975, 2200, 2224, 2258
SspMI CTAG 6 cut(s) 126, 258, 1298, 1310, 1470, 2174
StyD4I CCNGG 3 cut(s) 517, 1203, 1347
StyI CCWWGG 2 cut(s) 648, 2028
TaaI ACNGT 6 cut(s) 751, 1017, 1440, 1832, 2046, 2153
TaiI ACGT 6 cut(s) 559, 747, 865, 1963, 2338, 2372
TatI WGTACW 2 cut(s) 1063, 1921
TauI GCSGC 3 cut(s) 51, 164, 1763
TfiI GAWTC 8 cut(s) 368, 550, 590, 707, 1161, 1268, 1553, 2090
Tru1I TTAA 1 cut(s) 1776
Tru9I TTAA 1 cut(s) 1776
TscAI CASTG 4 cut(s) 738, 1648, 1771, 1876
TseFI GTSAC 4 cut(s) 745, 761, 850, 2186
TseI GCWGC 6 cut(s) 158, 644, 689, 1224, 1274, 2181
Tsp45I GTSAC 4 cut(s) 745, 761, 850, 2186
TspGWI ACGGA 3 cut(s) 42, 152, 358
TspRI CASTG 4 cut(s) 738, 1648, 1771, 1876
Van91I CCANNNNNTGG 2 cut(s) 1354, 2360
VneI GTGCAC 1 cut(s) 2013
XapI RAATTY 5 cut(s) 664, 1099, 1385, 1539, 1862
XceI RCATGY 2 cut(s) 644, 2328
XhoI CTCGAG 1 cut(s) 1821
XmiI GTMKAC 2 cut(s) 973, 1989
XmnI GAANNNNTTC 1 cut(s) 1293
XspI CTAG 6 cut(s) 126, 258, 1298, 1310, 1470, 2174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.