FvH4_5g17940

Protein NRDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010115
Physical Location & Seq
Forward (+)
10306565 .. 10313703
7139 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17940.t1

Sequence Viewer

Length: 2331 bp
ATGGCAAAAGATACTTATACAACATTCAGGAAGTTACAACTTGTGGAGAGAGTTTCTGCATGTTATCCAAGGGGAGTTCTCCAGATTCAAGGTTTCAGACATGAGAAAAATGGTTGCCAAGGAGATAAATCTCATTCAGATATTGCTATTGTTCAGCTAGAACTTGGTCTGGTTGATATTTTTCTCAGTTACTGTAGGTTTGAATGGCAGGTTGGCTACCAAGAGTTGGCCACCGCTCTGTTCCAGGCTGAAATTGAATTCAGTTTGTTTTGTCCTTCTTTGCTCCTCACTGAGCAGAGTAAGCAGATATTATTTGAGCACTTCTGGAACAGTGATGGTGCTAGAGTTGGAGAAGAGGGCGCTCTTGGTTGGTCCACATGGTTGGAGAAAGAGGAAGAAAATAGGCAAAGGGTTATCAGAGAGGAGGCGGCACATGATAATGAAGGTGGTTGGACAGGTTGGTCTGAACCACTATCAAAAAATAAGGAAAATAGTACCAGTACGGAAATGGAAGTTGAAAGTAATGCTGCAGTTGAGGAATTTCAAGAAGAAACTGAGAATGAAGATATCAAACAAGAAGAAGATACTGAAGCTTTGCTAAAGATGCTTGGTATTGATGTTGATATTGGGGCTAGTGGTGAGGTTAAAGACACTTCAACCTGGATTAGATGGTCAGAAGAAGAAAAATCAAGAGATTGTGATCAATGGATGCCTGTCCGTGCAAAATCTGAAGCTAAAGCCTCTAATAATGGCGGGACACCTGAGAGAGAAGCAGAGGAACACCTTTCAAGAGTCATAATGTATGAAGATGTTACTGAGTACCTCTTTTCTTTGGGCTCATCTGAGGCCCGTTTATCTCTAGTGTTACAGTTCGTTGATTTTTTTGGTGGGAAGACATCTCAGCGGATATCTACAAACAGTTCAGCTTGGTCTGAGAAACTCCTTGGCCTGGAGGCATTTCCACAGTCAGTATTACAAAGCCTGAGAAGGGTGCATGAGGTCTTAAGCAAAACACAAGATAGTTCAAATAGTTTCAGCTTGGAATCTCTCTTGGGGACCACCAATGACATCCATGAAAAGGCAGACCTGATGAAGTTTCTTCGTAATGCGACCTTGCTCTGTTTATCTGCTTTTCCACGTAATTATCTCCTAGAGGAAGCTGCTTTGGTTGCAGAAGAGCTATCTGTTGTGAATCTCAATCCATCCCGCAGTTCAGCTACCCCCTGCCGTGCTCTGGCAAAGTTTCTTTTAAAGAGTGATCGTCAGGATATATTGCTATGTGGTGTTTATGCAAGAAGAGAGGCTTTTTATGGGAATATTGATCATGCAAGAAGAGTATTTGACATGGCATTGTCATCTATTGAAGGGCTTCCTTTGGAATTGAGATCCAATGCTCCTCTTCTGTATTTCTGGTATGCTGAGGTGGAGCTAGCCAACAATCATGGAAATCGGTCTGAATCATCGTTTCGTGCAATGCATATTCTATCTTGCTTAGGAAGTGGTGTATCATATAGTCCGTTTAAATGTCAGCCATCAAATTTGCAATTGCTGAGAGCACGCCAAGGCTTCAAAGAAAGAATAAGAACAGTTCAAATGTCATGGGTACGTGGTGCTATAGATGATCAATCCGCTGCTCTCATAAGTTGTGCAGCTTTATTAGAAGAGTTAACTTCTGGATGGGCTTCAGGAATTGAGGTTCTGGATCAGGCTTTTGCAATGGTGCTTCCAGATAGAAGAAGCCATAGCCATCAACTTGAATTTATGTTCAACTTTTACATGAAGATGCTGTGGAGACATCATGGTCAATCAAGTCTATCAAAATGCTGGGAGTCCATTTTGCAGGGGCTTCGAATATATCCATTCAGCCCTGAACTTTATAGTGATCTAATTGAGGTTGGCCATTTTTATACAACTTCCAATAAACTGCGGTGGGTGTTTGATGACTACTGTCAAAAGAAACCATCTGTTGTCGTCTGGCTTTTTGCCTTGTCATTTGAGATAAGCAAAGGGGTATCACAGCATAGGATTCGTGGATTGTTTGAAAGGGCATTGGCAGATGATAAGTTTCATAACTCAGTTGTGCTGTGGCGATGCTACATTGCATATGAAATGAACATGGCATGCAATCCTTCCACATCCAGGCGAATATTCTTTCGAGCTATCCATGCCTGCCCATGGTCAAAGAAGCTATGGCTCGATGGTTTTCTCAAATTGAACTCCACCCTATCAGCAAAAGAGCTGTCAGATCTCCAAGAAGTTATGCGGGATAAGGAACTGAATCTGAGAACAGACATTTATGAAATTCTTTTGCAAGATGAGCTAGTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NRDE-2

Protein Analysis

777

Amino Acids

88.77

Weight (kDa)

5.27

Isoelectric Point (pI)

57.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NRDE-2 PF08424 46 - 297 9.6e-40 NRDE-2, necessary for RNA interference
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17712 AT3G17712 AT3G17712 AT3G17740
fragaria_vesca FvH4_5g17940 FvH4_5g17940 FvH4_5g17940
malus_domestica MD14G1242200.v1.1
prunus_persica Prupe.5G239800_v2.0.a1
pyrus_communis pycom14g20360
rosa_chinensis RchiOBHm_Chr7g0177661
rosa_laevigata RLG00000005516
rosa_multiflora Rmu_sc0004449.1_g000002 Rmu_ssc0000236.1_g000002
rosa_roxburghii Rroxscaffold_3G00275680
rosa_rugosa Rorug06G0408300
rosa_samantha Rh7AG007800 Rh7BG007700 Rh7CG008200 Rh7DG007900
rosa_wichuraiana Rw7G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 460, 1800
Acc36I ACCTGC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 226
AccBSI CCGCTC 1 cut(s) 236
AciI CCGC 8 cut(s) 234, 428, 753, 904, 1207, 1629, 1927, 2263
AclWI GGATC 2 cut(s) 1380, 1710
AcoI YGGCCR 2 cut(s) 228, 1897
AcsI RAATTY 5 cut(s) 257, 539, 1537, 1757, 2301
AcuI CTGAAG 3 cut(s) 609, 750, 1668
AfaI GTAC 4 cut(s) 496, 502, 821, 1605
AfiI CCNNNNNNNGG 7 cut(s) 226, 949, 988, 1078, 1234, 2139, 2175
AflII CTTAAG 1 cut(s) 1003
AjnI CCWGG 4 cut(s) 243, 659, 948, 2138
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AloI GAACNNNNNNTCC 2 cut(s) 1680, 1712
Alw21I GWGCWC 3 cut(s) 321, 1234, 1558
Alw26I GTCTC 1 cut(s) 1786
AlwI GGATC 2 cut(s) 1380, 1710
AlwNI CAGNNNCTG 1 cut(s) 192
AoxI GGCC 4 cut(s) 228, 846, 946, 1897
ApeKI GCWGC 4 cut(s) 527, 1160, 1631, 1649
ApoI RAATTY 5 cut(s) 257, 539, 1537, 1757, 2301
ArsI GACNNNNNNTTYG 2 cut(s) 2225, 2257
Asp700I GAANNNNTTC 1 cut(s) 1368
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 3 cut(s) 372, 847, 1056
AsuHPI GGTGA 1 cut(s) 650
AsuII TTCGAA 1 cut(s) 1849
AsuNHI GCTAGC 1 cut(s) 1429
AvaII GGWCC 2 cut(s) 372, 1056
BalI TGGCCA 2 cut(s) 230, 1899
BanII GRGCYC 1 cut(s) 839
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 3 cut(s) 321, 1234, 1558
BbvCI CCTCAGC 1 cut(s) 1419
BbvI GCAGC 4 cut(s) 514, 1147, 1618, 1661
BccI CCATC 8 cut(s) 329, 663, 1210, 1540, 1671, 1755, 1969, 2192
BceAI ACGGC 1 cut(s) 1212
BcgI CGANNNNNNTGC 4 cut(s) 1829, 1863, 2009, 2043
BciT130I CCWGG 4 cut(s) 245, 661, 950, 2140
BclI TGATCA 3 cut(s) 700, 1321, 1621
BcoDI GTCTC 1 cut(s) 1786
BfaI CTAG 7 cut(s) 158, 342, 633, 860, 1151, 1430, 2321
BfmI CTRYAG 3 cut(s) 193, 528, 1614
BfoI RGCGCY 1 cut(s) 363
BfrI CTTAAG 1 cut(s) 1003
BfuAI ACCTGC 1 cut(s) 199
BglII AGATCT 1 cut(s) 2245
BisI GCNGC 5 cut(s) 429, 528, 1161, 1632, 1650
BlsI GCNGC 5 cut(s) 430, 529, 1162, 1633, 1651
Bme1390I CCNGG 4 cut(s) 245, 661, 950, 2140
Bme18I GGWCC 2 cut(s) 372, 1056
BmgT120I GGNCC 3 cut(s) 372, 847, 1056
BmiI GGNNCC 1 cut(s) 1057
BmrFI CCNGG 4 cut(s) 245, 661, 950, 2140
BmsI GCATC 4 cut(s) 594, 699, 1773, 2081
BmtI GCTAGC 1 cut(s) 1433
BoxI GACNNNNGTC 1 cut(s) 1947
BpiI GAAGAC 1 cut(s) 899
BpmI CTGGAG 2 cut(s) 65, 971
Bpu10I CCTNAGC 2 cut(s) 1419, 1492
Bpu14I TTCGAA 1 cut(s) 1849
BsaAI YACGTR 2 cut(s) 1139, 1607
BsaBI GATNNNNATC 1 cut(s) 699
BsaJI CCNNGG 5 cut(s) 68, 118, 943, 1561, 2174
Bsc4I CCNNNNNNNGG 7 cut(s) 226, 949, 988, 1078, 1234, 2139, 2175
Bse1I ACTGG 1 cut(s) 498
Bse3DI GCAATG 3 cut(s) 1479, 1722, 2097
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 4 cut(s) 245, 661, 950, 2140
BseDI CCNNGG 5 cut(s) 68, 118, 943, 1561, 2174
BseGI GGATG 5 cut(s) 714, 1068, 1202, 1682, 2135
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 7 cut(s) 226, 949, 988, 1078, 1234, 2139, 2175
BseMI GCAATG 3 cut(s) 1479, 1722, 2097
BseNI ACTGG 1 cut(s) 498
BseRI GAGGAG 3 cut(s) 275, 437, 1386
BseXI GCAGC 4 cut(s) 514, 1147, 1618, 1661
BseYI CCCAGC 1 cut(s) 1824
BsgI GTGCAG 1 cut(s) 1668
BshFI GGCC 4 cut(s) 230, 848, 948, 1899
BsiHKAI GWGCWC 3 cut(s) 321, 1234, 1558
BslFI GGGAC 2 cut(s) 769, 1069
BslI CCNNNNNNNGG 7 cut(s) 226, 949, 988, 1078, 1234, 2139, 2175
BsmAI GTCTC 1 cut(s) 1786
BsmFI GGGAC 2 cut(s) 769, 1069
BsnI GGCC 4 cut(s) 230, 848, 948, 1899
Bsp119I TTCGAA 1 cut(s) 1849
Bsp1286I GDGCHC 4 cut(s) 321, 839, 1234, 1558
Bsp143I GATC 8 cut(s) 700, 1258, 1321, 1385, 1621, 1702, 1882, 2245
Bsp19I CCATGG 1 cut(s) 2174
BspACI CCGC 8 cut(s) 234, 428, 753, 904, 1207, 1629, 1927, 2263
BspANI GGCC 4 cut(s) 230, 848, 948, 1899
BspLI GGNNCC 1 cut(s) 1057
BspMAI CTGCAG 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 199
BspOI GCTAGC 1 cut(s) 1433
BspPI GGATC 2 cut(s) 1380, 1710
BspQI GCTCTTC 1 cut(s) 1170
BspT104I TTCGAA 1 cut(s) 1849
BspTI CTTAAG 1 cut(s) 1003
BsrBI CCGCTC 1 cut(s) 236
BsrDI GCAATG 3 cut(s) 1479, 1722, 2097
BsrI ACTGG 1 cut(s) 498
BssECI CCNNGG 5 cut(s) 68, 118, 943, 1561, 2174
BssMI GATC 8 cut(s) 700, 1258, 1321, 1385, 1621, 1702, 1882, 2245
BssT1I CCWWGG 5 cut(s) 68, 118, 943, 1561, 2174
Bst2UI CCWGG 4 cut(s) 245, 661, 950, 2140
Bst4CI ACNGT 7 cut(s) 194, 332, 870, 920, 966, 1588, 1949
Bst6I CTCTTC 6 cut(s) 348, 1170, 1291, 1327, 1404, 1656
BstAFI CTTAAG 1 cut(s) 1003
BstBAI YACGTR 2 cut(s) 1139, 1607
BstBI TTCGAA 1 cut(s) 1849
BstC8I GCNNGC 4 cut(s) 1431, 1558, 2122, 2170
BstDSI CCRYGG 1 cut(s) 2174
BstF5I GGATG 5 cut(s) 714, 1068, 1202, 1682, 2135
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 8 cut(s) 703, 1261, 1324, 1388, 1624, 1705, 1885, 2248
BstMAI GTCTC 1 cut(s) 1786
BstMBI GATC 8 cut(s) 700, 1258, 1321, 1385, 1621, 1702, 1882, 2245
BstMWI GCNNNNNNNGC 5 cut(s) 301, 604, 1169, 2165, 2317
BstNI CCWGG 4 cut(s) 245, 661, 950, 2140
BstNSI RCATGY 2 cut(s) 63, 2124
BstPAI GACNNNNGTC 1 cut(s) 1947
BstSCI CCNGG 4 cut(s) 243, 659, 948, 2138
BstSFI CTRYAG 3 cut(s) 193, 528, 1614
BstV1I GCAGC 4 cut(s) 514, 1147, 1618, 1661
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 2 cut(s) 1385, 2245
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 2 cut(s) 1385, 2245
BsuRI GGCC 4 cut(s) 230, 848, 948, 1899
BtgI CCRYGG 1 cut(s) 2174
BtgZI GCGATG 1 cut(s) 2104
BtsCI GGATG 5 cut(s) 714, 1068, 1202, 1682, 2135
BtsIMutI CAGTG 2 cut(s) 288, 337
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 4 cut(s) 1431, 1558, 2122, 2170
CaiI CAGNNNCTG 1 cut(s) 192
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 3 cut(s) 372, 847, 1056
Csp6I GTAC 4 cut(s) 495, 501, 820, 1604
CviQI GTAC 4 cut(s) 495, 501, 820, 1604
DpnI GATC 8 cut(s) 702, 1260, 1323, 1387, 1623, 1704, 1884, 2247
DpnII GATC 8 cut(s) 700, 1258, 1321, 1385, 1621, 1702, 1882, 2245
DraI TTTAAA 2 cut(s) 1251, 1522
DrdI GACNNNNNNGTC 2 cut(s) 460, 1800
DseDI GACNNNNNNGTC 2 cut(s) 460, 1800
EaeI YGGCCR 2 cut(s) 228, 1897
Eam1104I CTCTTC 6 cut(s) 348, 1170, 1291, 1327, 1404, 1656
EarI CTCTTC 6 cut(s) 348, 1170, 1291, 1327, 1404, 1656
Eco130I CCWWGG 5 cut(s) 68, 118, 943, 1561, 2174
Eco24I GRGCYC 1 cut(s) 839
Eco32I GATATC 2 cut(s) 568, 909
Eco47I GGWCC 2 cut(s) 372, 1056
Eco57I CTGAAG 3 cut(s) 609, 750, 1668
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 4 cut(s) 243, 659, 948, 2138
EcoRV GATATC 2 cut(s) 568, 909
EcoT14I CCWWGG 5 cut(s) 68, 118, 943, 1561, 2174
EcoT22I ATGCAT 1 cut(s) 1479
EcoT38I GRGCYC 1 cut(s) 839
ErhI CCWWGG 5 cut(s) 68, 118, 943, 1561, 2174
FalI AAGNNNNNCTT 2 cut(s) 1288, 1320
FaqI GGGAC 2 cut(s) 769, 1069
FauI CCCGC 3 cut(s) 746, 1214, 2256
FauNDI CATATG 1 cut(s) 2104
FbaI TGATCA 3 cut(s) 700, 1321, 1621
Fnu4HI GCNGC 5 cut(s) 429, 528, 1161, 1632, 1650
FokI GGATG 5 cut(s) 721, 1055, 1189, 1689, 2122
FriOI GRGCYC 1 cut(s) 839
Fsp4HI GCNGC 5 cut(s) 429, 528, 1161, 1632, 1650
FspBI CTAG 7 cut(s) 158, 342, 633, 860, 1151, 1430, 2321
GlaI GCGC 1 cut(s) 361
GluI GCNGC 5 cut(s) 429, 528, 1161, 1632, 1650
GsaI CCCAGC 1 cut(s) 1828
GsuI CTGGAG 2 cut(s) 65, 971
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 4 cut(s) 230, 848, 948, 1899
HhaI GCGC 1 cut(s) 362
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 1668
HindII GTYRAC 1 cut(s) 1668
HindIII AAGCTT 1 cut(s) 591
HinfI GANTC 8 cut(s) 85, 792, 1043, 1192, 1457, 1829, 2026, 2278
HpaI GTTAAC 1 cut(s) 1668
HphI GGTGA 1 cut(s) 650
Hpy166II GTNNAC 2 cut(s) 375, 1668
Hpy8I GTNNAC 2 cut(s) 375, 1668
HpyAV CCTTC 5 cut(s) 285, 437, 981, 1358, 2139
HpyCH4III ACNGT 7 cut(s) 194, 332, 870, 920, 966, 1588, 1949
HpyCH4IV ACGT 2 cut(s) 1138, 1606
HpyF10VI GCNNNNNNNGC 5 cut(s) 301, 604, 1169, 2165, 2317
HpySE526I ACGT 2 cut(s) 1138, 1606
HspAI GCGC 1 cut(s) 360
Ksp22I TGATCA 3 cut(s) 700, 1321, 1621
KspAI GTTAAC 1 cut(s) 1668
Kzo9I GATC 8 cut(s) 700, 1258, 1321, 1385, 1621, 1702, 1882, 2245
LguI GCTCTTC 1 cut(s) 1170
LmnI GCTCC 3 cut(s) 288, 1399, 1426
Lsp1109I GCAGC 4 cut(s) 514, 1147, 1618, 1661
LweI GCATC 4 cut(s) 594, 699, 1773, 2081
MaeI CTAG 7 cut(s) 158, 342, 633, 860, 1151, 1430, 2321
MaeII ACGT 2 cut(s) 1138, 1606
MaeIII GTNAC 4 cut(s) 33, 188, 811, 864
MalI GATC 8 cut(s) 702, 1260, 1323, 1387, 1623, 1704, 1884, 2247
MbiI CCGCTC 1 cut(s) 236
MboI GATC 8 cut(s) 700, 1258, 1321, 1385, 1621, 1702, 1882, 2245
MfeI CAATTG 1 cut(s) 1544
MflI RGATCY 2 cut(s) 1385, 2245
MhlI GDGCHC 4 cut(s) 321, 839, 1234, 1558
MlsI TGGCCA 2 cut(s) 230, 1899
MluNI TGGCCA 2 cut(s) 230, 1899
MlyI GAGTC 2 cut(s) 801, 1838
MmeI TCCRAC 3 cut(s) 328, 363, 431
Mox20I TGGCCA 2 cut(s) 230, 1899
Mph1103I ATGCAT 1 cut(s) 1479
MroXI GAANNNNTTC 1 cut(s) 1368
MscI TGGCCA 2 cut(s) 230, 1899
MseI TTAA 5 cut(s) 645, 1004, 1250, 1521, 1667
MslI CAYNNNNRTG 2 cut(s) 438, 1781
Msp20I TGGCCA 2 cut(s) 230, 1899
MspA1I CMGCKG 2 cut(s) 904, 1631
MspCI CTTAAG 1 cut(s) 1003
MspR9I CCNGG 4 cut(s) 245, 661, 950, 2140
MunI CAATTG 1 cut(s) 1544
MvaI CCWGG 4 cut(s) 245, 661, 950, 2140
MwoI GCNNNNNNNGC 5 cut(s) 301, 604, 1169, 2165, 2317
NcoI CCATGG 1 cut(s) 2174
NdeI CATATG 1 cut(s) 2104
NdeII GATC 8 cut(s) 700, 1258, 1321, 1385, 1621, 1702, 1882, 2245
NheI GCTAGC 1 cut(s) 1429
NlaIV GGNNCC 1 cut(s) 1057
NsiI ATGCAT 1 cut(s) 1479
NspI RCATGY 2 cut(s) 63, 2124
NspV TTCGAA 1 cut(s) 1849
PaeI GCATGC 1 cut(s) 2124
PciSI GCTCTTC 1 cut(s) 1170
PdmI GAANNNNTTC 1 cut(s) 1368
PfeI GAWTC 6 cut(s) 85, 1043, 1192, 1457, 2026, 2278
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 5 cut(s) 430, 529, 1162, 1633, 1651
PleI GAGTC 2 cut(s) 800, 1837
PpsI GAGTC 2 cut(s) 800, 1837
Ppu21I YACGTR 2 cut(s) 1139, 1607
PshAI GACNNNNGTC 1 cut(s) 1947
Psp6I CCWGG 4 cut(s) 243, 659, 948, 2138
PspFI CCCAGC 1 cut(s) 1824
PspGI CCWGG 4 cut(s) 243, 659, 948, 2138
PspN4I GGNNCC 1 cut(s) 1057
PspPI GGNCC 3 cut(s) 372, 847, 1056
PstI CTGCAG 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 192
PsuI RGATCY 2 cut(s) 1385, 2245
RsaI GTAC 4 cut(s) 496, 502, 821, 1605
RsaNI GTAC 4 cut(s) 495, 501, 820, 1604
RseI CAYNNNNRTG 2 cut(s) 438, 1781
SapI GCTCTTC 1 cut(s) 1170
SaqAI TTAA 5 cut(s) 645, 1004, 1250, 1521, 1667
SatI GCNGC 5 cut(s) 429, 528, 1161, 1632, 1650
Sau3AI GATC 8 cut(s) 700, 1258, 1321, 1385, 1621, 1702, 1882, 2245
Sau96I GGNCC 3 cut(s) 372, 847, 1056
SchI GAGTC 2 cut(s) 801, 1838
ScrFI CCNGG 4 cut(s) 245, 661, 950, 2140
SduI GDGCHC 4 cut(s) 321, 839, 1234, 1558
SfaNI GCATC 4 cut(s) 594, 699, 1773, 2081
SfcI CTRYAG 3 cut(s) 193, 528, 1614
SfuI TTCGAA 1 cut(s) 1849
SinI GGWCC 2 cut(s) 372, 1056
SmiMI CAYNNNNRTG 2 cut(s) 438, 1781
SmlI CTYRAG 1 cut(s) 1003
SmoI CTYRAG 1 cut(s) 1003
SphI GCATGC 1 cut(s) 2124
SsiI CCGC 8 cut(s) 234, 428, 753, 904, 1207, 1629, 1927, 2263
SspI AATATT 2 cut(s) 1318, 2148
SspMI CTAG 7 cut(s) 158, 342, 633, 860, 1151, 1430, 2321
StyD4I CCNGG 4 cut(s) 243, 659, 948, 2138
StyI CCWWGG 5 cut(s) 68, 118, 943, 1561, 2174
TaaI ACNGT 7 cut(s) 194, 332, 870, 920, 966, 1588, 1949
TaiI ACGT 2 cut(s) 1141, 1609
TaqI TCGA 3 cut(s) 1849, 2155, 2196
TaqII GACCGA 1 cut(s) 1440
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 6 cut(s) 85, 1043, 1192, 1457, 2026, 2278
Tru1I TTAA 5 cut(s) 645, 1004, 1250, 1521, 1667
Tru9I TTAA 5 cut(s) 645, 1004, 1250, 1521, 1667
TscAI CASTG 2 cut(s) 295, 337
TseI GCWGC 4 cut(s) 527, 1160, 1631, 1649
TspGWI ACGGA 3 cut(s) 518, 707, 1506
TspRI CASTG 2 cut(s) 295, 337
Van91I CCANNNNNTGG 1 cut(s) 226
Vha464I CTTAAG 1 cut(s) 1003
VpaK11BI GGWCC 2 cut(s) 372, 1056
XapI RAATTY 5 cut(s) 257, 539, 1537, 1757, 2301
XceI RCATGY 2 cut(s) 63, 2124
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 1368
XspI CTAG 7 cut(s) 158, 342, 633, 860, 1151, 1430, 2321
Zsp2I ATGCAT 1 cut(s) 1479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.