Rmu_sc0004449.1_g000002

Protein NRDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004449.1
OG0010115
Physical Location & Seq
Forward (+)
1852 .. 6943
5092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004449.1_g000002.1.cds

Sequence Viewer

Length: 2832 bp
atggacgacgacaggccgtcgccgtcgctgttcccagtcatagccgcctctcagcaagtctcaaacgtccctcaatggctctccaacaccagcttcaccaccaacctctccgtcataaacgacgccgttgcctcgcacttcaaacctgagccaccgccaccgccggaggagcaagacgacgtacggccccagccgaagccgttcgagcttctggaatcttctagcggatccgaagcgagcgatgagagagacaggacgagcaagaaggagaaggggaagaggaggaagaagaggcggcgcgcgcagagagacggcgggtcgttcgccggtttcgggtcgagaaagtccagtgttcgggcttgggccgaatccgagactagaccgtcggaaaattattacttggattccagtggcgaccttgataatttggcctttggatgtctctataggatggacattgctcgatacaaaccttatgctgctctttcggatagctccgggaattttaaagctttgtatcaggggaatcagacaatttcaacattggatagagatgctgatgttgatgcattggatggtaaactaaaatccgggggtcgctattggtctgcaaagtacatggctttggaacgccataagaacttaaagcgccttcgtttacttgcccctagagaccttgcggatacagtttcaggtgattttattcctttgacggatattcaaacatccgatgaaggtgaaggtgttgctgctgatgagtcactctcgggaactccagtagtggtcgaagaatcatgggaagatgaattgctacgcaagactcgggagtttaacaaattgacgagggagcatcctcatgatgagaaggtttggttggcttttgctgagttccaagacaaggttgctgatatgcagccccagaaaggtgctcgcttgcagactctggaaaaaaagattagcatattggagaaagccacagagcttaacccagataatgaagaactgttgctttgtcttctaaaggcttataaaagcagagacagttccgatgtattaattagtagatgggaaaagatactcatacagcattcaggaaattaccacttgtggagagagtttctgcatgttattcaaggggagttctccaggttcaaggtttcagacatgagaaaaatgtacgcacatgcaatccaggctatatctgctgcatgcagaatgcactctaggcaggtttgccaaggagaaaaatcttctccagatcccgctattgttcaactagaacttggtctggtggatatttttctcagttattgtaggtttgaatggcaggttggctaccaagagttggccaccgctctatttcaggctgaaattgaattcagtttgttttgtccttctttgctcctcactgagcagagtaagcagatattatttgagcacttctggaacagtgatggtgctagagttggagaagaaggcgctcttggttggtccacatggttggagaaagaggaagaaaataggcaaagggtcatcagagaggagatggcacatgataatgaaggtggttggacaggttggtctgaaccactatcaaaaaataaggaaggtagtaccaatccagaaaaggaagctgaaagtaatgctgtacttgaggaatttcaagaagaaactgagaacgaagatgtcaagcaagaagatgatactgaagctttgctaaagatgctcggtattgatgttgatgttggggctactggtgaggttaaagacgcttcaacctgggttagatggtcagaagaagaaaaatcaagagattgtgatcaatggatgcctgttcgtgcaaaatctgaagctgttgcctctaataatggtgggacacctgatagagaagcagaagaacacctttcgagagtcataatgtatgaagatgttgctgagtacctcttttctttgagctcatttgaggcccgtttatctctagtgttacagttcgttgatttctttggtgggaagacatctcagtggatatctacaaacagttcagcttggtctgagaaactccttagcctagaggcattgccacattcagtattacacactctgaaaagggttcatgatgtcttaagcaaaacacaaggtagttcaaatagtttcagcttggaatctctgttggggaccaccaatgacatccatggacaggcagacctgatgaagtttctttgtaatgctaccttgctctgtttatctgcttttccacgtaattatctcctagaggaagctgctttagttgcagaagagctatctgttgtgaatctgaatccatcccgcagttcagttaccccctgccgtgctctagcaaagcatcttttaaagagtgatcgtcaggatatattgctatgtggtgtttatgcaagaagagaggctttttatgggaatattgatcatgcaagaagagtatttgacatggcgttgtcatctattgaagggcttcctttggaattgaggtccaatgctcctcttctgtatttctggtatgctgaggtggagctagccaaagatcagggaaatcggtctgaatcatcatttcgtgcaatgcatattttatcttgctttggaagtggtggatcatatagtccgtttaaatgtcagccatcaaatttgcaattgctgagagcacgccaaggcttcaaagaaataataagaacagtgcaaatgtcatgtttacgtggtgttatagatgatcaatccgctgctctcgtatgttgtgctgctttatttgaagagttaacttctggatgggctttgggaattgaagttctagatcaggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NRDE-2

Protein Analysis

943

Amino Acids

106.21

Weight (kDa)

5.08

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17712 AT3G17712 AT3G17712 AT3G17740
fragaria_vesca FvH4_5g17940 FvH4_5g17940 FvH4_5g17940
malus_domestica MD14G1242200.v1.1
prunus_persica Prupe.5G239800_v2.0.a1
pyrus_communis pycom14g20360
rosa_chinensis RchiOBHm_Chr7g0177661
rosa_laevigata RLG00000005516
rosa_multiflora Rmu_sc0004449.1_g000002 Rmu_ssc0000236.1_g000002
rosa_roxburghii Rroxscaffold_3G00275680
rosa_rugosa Rorug06G0408300
rosa_samantha Rh7AG007800 Rh7BG007700 Rh7CG008200 Rh7DG007900
rosa_wichuraiana Rw7G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1029
AasI GACNNNNNNGTC 2 cut(s) 382, 1579
Acc36I ACCTGC 2 cut(s) 1219, 1318
AccB7I CCANNNNNTGG 1 cut(s) 1345
AccBSI CCGCTC 1 cut(s) 1355
AccII CGCG 2 cut(s) 300, 302
AclWI GGATC 4 cut(s) 222, 235, 1253, 2632
AcoI YGGCCR 1 cut(s) 1347
AcsI RAATTY 4 cut(s) 502, 1376, 1658, 2656
AcuI CTGAAG 2 cut(s) 1728, 1869
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 6 cut(s) 183, 617, 1178, 1615, 1650, 1940
AfiI CCNNNNNNNGG 6 cut(s) 333, 354, 898, 923, 1345, 2197
AflII CTTAAG 1 cut(s) 2122
AhdI GACNNNNNGTC 2 cut(s) 16, 316
AjnI CCWGG 3 cut(s) 1145, 1191, 1778
AjuI GAANNNNNNNTTGG 8 cut(s) 77, 109, 857, 889, 1314, 1346, 1467, 1499
AloI GAACNNNNNNTCC 2 cut(s) 2799, 2831
Alw21I GWGCWC 5 cut(s) 931, 1440, 1958, 2353, 2677
Alw26I GTCTC 7 cut(s) 64, 243, 303, 368, 446, 666, 1032
AlwI GGATC 4 cut(s) 222, 235, 1253, 2632
AlwNI CAGNNNCTG 1 cut(s) 943
Ama87I CYCGRG 2 cut(s) 766, 822
AoxI GGCC 6 cut(s) 14, 185, 363, 429, 1347, 1965
ApeKI GCWGC 7 cut(s) 479, 749, 913, 1205, 2279, 2750, 2768
ApoI RAATTY 4 cut(s) 502, 1376, 1658, 2656
AseI ATTAAT 1 cut(s) 1055
Asp700I GAANNNNTTC 2 cut(s) 200, 2487
AspLEI GCGC 5 cut(s) 300, 302, 304, 651, 1481
AspS9I GGNCC 6 cut(s) 186, 363, 1491, 1966, 2175, 2505
AsuC2I CCSGG 2 cut(s) 499, 592
AsuHPI GGTGA 4 cut(s) 88, 707, 749, 1769
AsuNHI GCTAGC 1 cut(s) 2548
AvaI CYCGRG 2 cut(s) 766, 822
AvaII GGWCC 3 cut(s) 1491, 2175, 2505
BalI TGGCCA 1 cut(s) 1349
BamHI GGATCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 1958
BbsI GAAGAC 2 cut(s) 1007, 2018
Bbv12I GWGCWC 5 cut(s) 931, 1440, 1958, 2353, 2677
BbvCI CCTCAGC 1 cut(s) 2538
BbvI GCAGC 7 cut(s) 466, 736, 925, 1192, 2266, 2737, 2755
BccI CCATC 9 cut(s) 445, 569, 1059, 1448, 1540, 1782, 2329, 2659, 2790
BceAI ACGGC 6 cut(s) 7, 110, 184, 200, 328, 2331
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciT130I CCWGG 3 cut(s) 1147, 1193, 1780
BciVI GTATCC 1 cut(s) 676
BclI TGATCA 3 cut(s) 1819, 2440, 2740
BcnI CCSGG 2 cut(s) 499, 592
BcoDI GTCTC 7 cut(s) 64, 243, 303, 368, 446, 666, 1032
BfmI CTRYAG 1 cut(s) 445
BfoI RGCGCY 2 cut(s) 652, 1482
BfrI CTTAAG 1 cut(s) 2122
BfuAI ACCTGC 2 cut(s) 1219, 1318
BfuI GTATCC 1 cut(s) 676
BisI GCNGC 9 cut(s) 45, 296, 480, 750, 914, 1206, 2280, 2751, 2769
BlsI GCNGC 9 cut(s) 46, 297, 481, 751, 915, 1207, 2281, 2752, 2770
Bme1390I CCNGG 5 cut(s) 499, 592, 1147, 1193, 1780
Bme18I GGWCC 3 cut(s) 1491, 2175, 2505
BmeRI GACNNNNNGTC 2 cut(s) 16, 316
BmeT110I CYCGRG 2 cut(s) 766, 822
BmgT120I GGNCC 6 cut(s) 186, 363, 1491, 1966, 2175, 2505
BmiI GGNNCC 3 cut(s) 188, 229, 2176
BmrFI CCNGG 5 cut(s) 499, 592, 1147, 1193, 1780
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 6 cut(s) 544, 556, 859, 1713, 1818, 2371
BmtI GCTAGC 1 cut(s) 2552
BmuI ACTGGG 1 cut(s) 29
BpiI GAAGAC 2 cut(s) 1007, 2018
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpmI CTGGAG 3 cut(s) 759, 1129, 1239
Bpu10I CCTNAGC 3 cut(s) 147, 2063, 2538
BpuEI CTTGAG 1 cut(s) 1673
BpuMI CCSGG 2 cut(s) 499, 592
BsaAI YACGTR 2 cut(s) 2258, 2726
BsaBI GATNNNNATC 1 cut(s) 1818
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 666
BsaJI CCNNGG 5 cut(s) 591, 1237, 1779, 2191, 2680
Bsc4I CCNNNNNNNGG 6 cut(s) 333, 354, 898, 923, 1345, 2197
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 5 cut(s) 35, 348, 408, 776, 1759
Bse3DI GCAATG 3 cut(s) 456, 2075, 2598
Bse8I GATNNNNATC 1 cut(s) 1818
BseBI CCWGG 3 cut(s) 1147, 1193, 1780
BseDI CCNNGG 5 cut(s) 591, 1237, 1779, 2191, 2680
BseGI GGATG 9 cut(s) 443, 456, 580, 725, 850, 1833, 2187, 2321, 2801
BseJI GATNNNNATC 1 cut(s) 1818
BseLI CCNNNNNNNGG 6 cut(s) 333, 354, 898, 923, 1345, 2197
BseMI GCAATG 3 cut(s) 456, 2075, 2598
BseNI ACTGG 5 cut(s) 35, 348, 408, 776, 1759
BsePI GCGCGC 2 cut(s) 298, 300
BseRI GAGGAG 5 cut(s) 182, 295, 1394, 1556, 2505
BseXI GCAGC 7 cut(s) 466, 736, 925, 1192, 2266, 2737, 2755
BseYI CCCAGC 1 cut(s) 189
Bsh1236I CGCG 2 cut(s) 300, 302
BshFI GGCC 6 cut(s) 16, 187, 365, 431, 1349, 1967
BsiHKAI GWGCWC 5 cut(s) 931, 1440, 1958, 2353, 2677
BsiHKCI CYCGRG 2 cut(s) 766, 822
BsiSI CCGG 4 cut(s) 164, 327, 498, 591
BsiWI CGTACG 1 cut(s) 181
BslFI GGGAC 3 cut(s) 53, 1888, 2188
BslI CCNNNNNNNGG 6 cut(s) 333, 354, 898, 923, 1345, 2197
BsmAI GTCTC 7 cut(s) 64, 243, 303, 368, 446, 666, 1032
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 3 cut(s) 53, 1888, 2188
BsmI GAATGC 2 cut(s) 1087, 1221
BsnI GGCC 6 cut(s) 16, 187, 365, 431, 1349, 1967
Bso31I GGTCTC 1 cut(s) 666
BsoBI CYCGRG 2 cut(s) 766, 822
Bsp1286I GDGCHC 5 cut(s) 931, 1440, 1958, 2353, 2677
Bsp143I GATC 9 cut(s) 227, 1258, 1819, 2377, 2440, 2557, 2624, 2740, 2821
Bsp19I CCATGG 1 cut(s) 2191
BspANI GGCC 6 cut(s) 16, 187, 365, 431, 1349, 1967
BspFNI CGCG 2 cut(s) 300, 302
BspHI TCATGA 2 cut(s) 856, 2113
BspLI GGNNCC 3 cut(s) 188, 229, 2176
BspMI ACCTGC 2 cut(s) 1219, 1318
BspOI GCTAGC 1 cut(s) 2552
BspPI GGATC 4 cut(s) 222, 235, 1253, 2632
BspQI GCTCTTC 1 cut(s) 2289
BspTI CTTAAG 1 cut(s) 2122
BspTNI GGTCTC 1 cut(s) 666
BsrBI CCGCTC 1 cut(s) 1355
BsrDI GCAATG 3 cut(s) 456, 2075, 2598
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 5 cut(s) 35, 348, 408, 776, 1759
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 5 cut(s) 591, 1237, 1779, 2191, 2680
BssHII GCGCGC 2 cut(s) 298, 300
BssMI GATC 9 cut(s) 227, 1258, 1819, 2377, 2440, 2557, 2624, 2740, 2821
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 3 cut(s) 1237, 2191, 2680
Bst2UI CCWGG 3 cut(s) 1147, 1193, 1780
Bst4CI ACNGT 8 cut(s) 384, 688, 1005, 1043, 1451, 1989, 2039, 2707
Bst6I CTCTTC 7 cut(s) 272, 284, 2289, 2410, 2446, 2523, 2775
BstACI GRCGYC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 2122
BstBAI YACGTR 2 cut(s) 2258, 2726
BstC8I GCNNGC 8 cut(s) 238, 300, 302, 931, 935, 1210, 2550, 2677
BstDSI CCRYGG 1 cut(s) 2191
BstF5I GGATG 9 cut(s) 443, 456, 580, 725, 850, 1833, 2187, 2321, 2801
BstFNI CGCG 2 cut(s) 300, 302
BstH2I RGCGCY 2 cut(s) 652, 1482
BstHHI GCGC 5 cut(s) 300, 302, 304, 651, 1481
BstKTI GATC 9 cut(s) 230, 1261, 1822, 2380, 2443, 2560, 2627, 2743, 2824
BstMAI GTCTC 7 cut(s) 64, 243, 303, 368, 446, 666, 1032
BstMBI GATC 9 cut(s) 227, 1258, 1819, 2377, 2440, 2557, 2624, 2740, 2821
BstMWI GCNNNNNNNGC 9 cut(s) 169, 205, 301, 1193, 1202, 1225, 1420, 1723, 2288
BstNI CCWGG 3 cut(s) 1147, 1193, 1780
BstNSI RCATGY 3 cut(s) 1127, 1187, 1212
BstSCI CCNGG 5 cut(s) 497, 590, 1145, 1191, 1778
BstSFI CTRYAG 1 cut(s) 445
BstUI CGCG 2 cut(s) 300, 302
BstV1I GCAGC 7 cut(s) 466, 736, 925, 1192, 2266, 2737, 2755
BstV2I GAAGAC 2 cut(s) 1007, 2018
BstX2I RGATCY 2 cut(s) 227, 1258
BstXI CCANNNNNNTGG 1 cut(s) 1501
BstYI RGATCY 2 cut(s) 227, 1258
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 6 cut(s) 16, 187, 365, 431, 1349, 1967
BtgI CCRYGG 1 cut(s) 2191
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 9 cut(s) 443, 456, 580, 725, 850, 1833, 2187, 2321, 2801
BtsIMutI CAGTG 6 cut(s) 355, 415, 1407, 1456, 2027, 2712
BveI ACCTGC 2 cut(s) 1219, 1318
Cac8I GCNNGC 8 cut(s) 238, 300, 302, 931, 935, 1210, 2550, 2677
CaiI CAGNNNCTG 1 cut(s) 943
CciI TCATGA 2 cut(s) 856, 2113
CfoI GCGC 5 cut(s) 300, 302, 304, 651, 1481
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 6 cut(s) 186, 363, 1491, 1966, 2175, 2505
CseI GACGC 2 cut(s) 131, 1778
Csp6I GTAC 6 cut(s) 182, 616, 1177, 1614, 1649, 1939
CviQI GTAC 6 cut(s) 182, 616, 1177, 1614, 1649, 1939
DpnI GATC 9 cut(s) 229, 1260, 1821, 2379, 2442, 2559, 2626, 2742, 2823
DpnII GATC 9 cut(s) 227, 1258, 1819, 2377, 2440, 2557, 2624, 2740, 2821
DraI TTTAAA 3 cut(s) 508, 2370, 2641
DrdI GACNNNNNNGTC 2 cut(s) 382, 1579
DriI GACNNNNNGTC 2 cut(s) 16, 316
DseDI GACNNNNNNGTC 2 cut(s) 382, 1579
EaeI YGGCCR 1 cut(s) 1347
Eam1104I CTCTTC 7 cut(s) 272, 284, 2289, 2410, 2446, 2523, 2775
Eam1105I GACNNNNNGTC 2 cut(s) 16, 316
EarI CTCTTC 7 cut(s) 272, 284, 2289, 2410, 2446, 2523, 2775
Ecl136II GAGCTC 1 cut(s) 1956
Eco130I CCWWGG 3 cut(s) 1237, 2191, 2680
Eco24I GRGCYC 1 cut(s) 1958
Eco31I GGTCTC 1 cut(s) 666
Eco32I GATATC 1 cut(s) 2028
Eco47I GGWCC 3 cut(s) 1491, 2175, 2505
Eco53kI GAGCTC 1 cut(s) 1956
Eco57I CTGAAG 2 cut(s) 1728, 1869
Eco88I CYCGRG 2 cut(s) 766, 822
EcoICRI GAGCTC 1 cut(s) 1956
EcoRI GAATTC 1 cut(s) 1376
EcoRII CCWGG 3 cut(s) 1145, 1191, 1778
EcoRV GATATC 1 cut(s) 2028
EcoT14I CCWWGG 3 cut(s) 1237, 2191, 2680
EcoT22I ATGCAT 2 cut(s) 571, 2598
EcoT38I GRGCYC 1 cut(s) 1958
ErhI CCWWGG 3 cut(s) 1237, 2191, 2680
Esp3I CGTCTC 1 cut(s) 303
FalI AAGNNNNNCTT 6 cut(s) 1467, 1499, 1887, 1919, 2407, 2439
FaqI GGGAC 3 cut(s) 53, 1888, 2188
FauI CCCGC 3 cut(s) 308, 1270, 2333
FbaI TGATCA 3 cut(s) 1819, 2440, 2740
Fnu4HI GCNGC 9 cut(s) 45, 296, 480, 750, 914, 1206, 2280, 2751, 2769
FokI GGATG 9 cut(s) 450, 463, 587, 712, 837, 1840, 2174, 2308, 2808
FriOI GRGCYC 1 cut(s) 1958
Fsp4HI GCNGC 9 cut(s) 45, 296, 480, 750, 914, 1206, 2280, 2751, 2769
GlaI GCGC 5 cut(s) 299, 301, 303, 650, 1480
GluI GCNGC 9 cut(s) 45, 296, 480, 750, 914, 1206, 2280, 2751, 2769
GsaI CCCAGC 1 cut(s) 193
GsuI CTGGAG 3 cut(s) 759, 1129, 1239
HaeII RGCGCY 2 cut(s) 652, 1482
HaeIII GGCC 6 cut(s) 16, 187, 365, 431, 1349, 1967
HapII CCGG 4 cut(s) 164, 327, 498, 591
HgaI GACGC 2 cut(s) 131, 1778
HhaI GCGC 5 cut(s) 300, 302, 304, 651, 1481
Hin1I GRCGYC 1 cut(s) 123
Hin6I GCGC 5 cut(s) 298, 300, 302, 649, 1479
HinP1I GCGC 5 cut(s) 298, 300, 302, 649, 1479
HincII GTYRAC 1 cut(s) 2787
HindII GTYRAC 1 cut(s) 2787
HindIII AAGCTT 2 cut(s) 510, 1710
HpaI GTTAAC 1 cut(s) 2787
HpaII CCGG 4 cut(s) 164, 327, 498, 591
HphI GGTGA 4 cut(s) 88, 707, 749, 1769
Hpy166II GTNNAC 5 cut(s) 581, 659, 1494, 2723, 2787
Hpy8I GTNNAC 5 cut(s) 581, 659, 1494, 2723, 2787
Hpy99I CGWCG 6 cut(s) 11, 22, 28, 125, 182, 388
HpyCH4III ACNGT 8 cut(s) 384, 688, 1005, 1043, 1451, 1989, 2039, 2707
HpyCH4IV ACGT 4 cut(s) 66, 180, 2257, 2725
HpyF10VI GCNNNNNNNGC 9 cut(s) 169, 205, 301, 1193, 1202, 1225, 1420, 1723, 2288
HpySE526I ACGT 4 cut(s) 66, 180, 2257, 2725
Hsp92I GRCGYC 1 cut(s) 123
HspAI GCGC 5 cut(s) 298, 300, 302, 649, 1479
Ksp22I TGATCA 3 cut(s) 1819, 2440, 2740
KspAI GTTAAC 1 cut(s) 2787
Kzo9I GATC 9 cut(s) 227, 1258, 1819, 2377, 2440, 2557, 2624, 2740, 2821
LguI GCTCTTC 1 cut(s) 2289
LmnI GCTCC 6 cut(s) 169, 500, 847, 1407, 2518, 2545
Lsp1109I GCAGC 7 cut(s) 466, 736, 925, 1192, 2266, 2737, 2755
LweI GCATC 6 cut(s) 544, 556, 859, 1713, 1818, 2371
MaeII ACGT 4 cut(s) 66, 180, 2257, 2725
MaeIII GTNAC 3 cut(s) 759, 1983, 2335
MalI GATC 9 cut(s) 229, 1260, 1821, 2379, 2442, 2559, 2626, 2742, 2823
MbiI CCGCTC 1 cut(s) 1355
MboI GATC 9 cut(s) 227, 1258, 1819, 2377, 2440, 2557, 2624, 2740, 2821
MfeI CAATTG 1 cut(s) 2663
MflI RGATCY 2 cut(s) 227, 1258
MhlI GDGCHC 5 cut(s) 931, 1440, 1958, 2353, 2677
MlsI TGGCCA 1 cut(s) 1349
MluNI TGGCCA 1 cut(s) 1349
MlyI GAGTC 4 cut(s) 767, 814, 934, 1920
MmeI TCCRAC 5 cut(s) 108, 366, 1447, 1482, 1550
Mox20I TGGCCA 1 cut(s) 1349
Mph1103I ATGCAT 2 cut(s) 571, 2598
MroXI GAANNNNTTC 2 cut(s) 200, 2487
MscI TGGCCA 1 cut(s) 1349
MslI CAYNNNNRTG 3 cut(s) 855, 1557, 2020
Msp20I TGGCCA 1 cut(s) 1349
MspA1I CMGCKG 1 cut(s) 2750
MspCI CTTAAG 1 cut(s) 2122
MspI CCGG 4 cut(s) 164, 327, 498, 591
MspR9I CCNGG 5 cut(s) 499, 592, 1147, 1193, 1780
MunI CAATTG 1 cut(s) 2663
Mva1269I GAATGC 2 cut(s) 1087, 1221
MvaI CCWGG 3 cut(s) 1147, 1193, 1780
MvnI CGCG 2 cut(s) 300, 302
MwoI GCNNNNNNNGC 9 cut(s) 169, 205, 301, 1193, 1202, 1225, 1420, 1723, 2288
NciI CCSGG 2 cut(s) 499, 592
NcoI CCATGG 1 cut(s) 2191
NdeII GATC 9 cut(s) 227, 1258, 1819, 2377, 2440, 2557, 2624, 2740, 2821
NheI GCTAGC 1 cut(s) 2548
NlaIV GGNNCC 3 cut(s) 188, 229, 2176
NmuCI GTSAC 1 cut(s) 759
NsiI ATGCAT 2 cut(s) 571, 2598
NspI RCATGY 3 cut(s) 1127, 1187, 1212
PaeI GCATGC 1 cut(s) 1212
PagI TCATGA 2 cut(s) 856, 2113
PauI GCGCGC 2 cut(s) 298, 300
PciSI GCTCTTC 1 cut(s) 2289
PctI GAATGC 2 cut(s) 1087, 1221
PdmI GAANNNNTTC 2 cut(s) 200, 2487
PfeI GAWTC 9 cut(s) 215, 368, 404, 526, 791, 2162, 2311, 2317, 2576
Pfl23II CGTACG 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 1345
PfoI TCCNGGA 1 cut(s) 497
PkrI GCNGC 9 cut(s) 46, 297, 481, 751, 915, 1207, 2281, 2752, 2770
PleI GAGTC 4 cut(s) 766, 814, 934, 1919
PpsI GAGTC 4 cut(s) 766, 814, 934, 1919
Ppu21I YACGTR 2 cut(s) 2258, 2726
PshBI ATTAAT 1 cut(s) 1055
PsiI TTATAA 1 cut(s) 1029
Psp124BI GAGCTC 1 cut(s) 1958
Psp6I CCWGG 3 cut(s) 1145, 1191, 1778
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 3 cut(s) 1145, 1191, 1778
PspLI CGTACG 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 188, 229, 2176
PspPI GGNCC 6 cut(s) 186, 363, 1491, 1966, 2175, 2505
PstNI CAGNNNCTG 1 cut(s) 943
PsuI RGATCY 2 cut(s) 227, 1258
PteI GCGCGC 2 cut(s) 298, 300
RsaI GTAC 6 cut(s) 183, 617, 1178, 1615, 1650, 1940
RsaNI GTAC 6 cut(s) 182, 616, 1177, 1614, 1649, 1939
RseI CAYNNNNRTG 3 cut(s) 855, 1557, 2020
SacI GAGCTC 1 cut(s) 1958
SapI GCTCTTC 1 cut(s) 2289
SatI GCNGC 9 cut(s) 45, 296, 480, 750, 914, 1206, 2280, 2751, 2769
Sau3AI GATC 9 cut(s) 227, 1258, 1819, 2377, 2440, 2557, 2624, 2740, 2821
Sau96I GGNCC 6 cut(s) 186, 363, 1491, 1966, 2175, 2505
SchI GAGTC 4 cut(s) 767, 814, 934, 1920
ScrFI CCNGG 5 cut(s) 499, 592, 1147, 1193, 1780
SduI GDGCHC 5 cut(s) 931, 1440, 1958, 2353, 2677
SfaNI GCATC 6 cut(s) 544, 556, 859, 1713, 1818, 2371
SfcI CTRYAG 1 cut(s) 445
SinI GGWCC 3 cut(s) 1491, 2175, 2505
SmiMI CAYNNNNRTG 3 cut(s) 855, 1557, 2020
SmlI CTYRAG 2 cut(s) 1652, 2122
SmoI CTYRAG 2 cut(s) 1652, 2122
SphI GCATGC 1 cut(s) 1212
SspI AATATT 1 cut(s) 2437
SstI GAGCTC 1 cut(s) 1958
StyD4I CCNGG 5 cut(s) 497, 590, 1145, 1191, 1778
StyI CCWWGG 3 cut(s) 1237, 2191, 2680
TaaI ACNGT 8 cut(s) 384, 688, 1005, 1043, 1451, 1989, 2039, 2707
TaiI ACGT 4 cut(s) 69, 183, 2260, 2728
TaqI TCGA 5 cut(s) 204, 338, 463, 786, 1907
TaqII GACCGA 1 cut(s) 2559
TatI WGTACW 2 cut(s) 615, 1648
TauI GCSGC 2 cut(s) 47, 298
TfiI GAWTC 9 cut(s) 215, 368, 404, 526, 791, 2162, 2311, 2317, 2576
TscAI CASTG 6 cut(s) 355, 415, 1414, 1456, 2027, 2712
TseFI GTSAC 1 cut(s) 759
TseI GCWGC 7 cut(s) 479, 749, 913, 1205, 2279, 2750, 2768
Tsp45I GTSAC 1 cut(s) 759
TspDTI ATGAA 7 cut(s) 747, 819, 1011, 1575, 1938, 2102, 2225
TspGWI ACGGA 3 cut(s) 100, 728, 2625
TspRI CASTG 6 cut(s) 355, 415, 1414, 1456, 2027, 2712
Van91I CCANNNNNTGG 1 cut(s) 1345
Vha464I CTTAAG 1 cut(s) 2122
VpaK11BI GGWCC 3 cut(s) 1491, 2175, 2505
VspI ATTAAT 1 cut(s) 1055
XapI RAATTY 4 cut(s) 502, 1376, 1658, 2656
XbaI TCTAGA 1 cut(s) 2818
XceI RCATGY 3 cut(s) 1127, 1187, 1212
XmnI GAANNNNTTC 2 cut(s) 200, 2487
Zsp2I ATGCAT 2 cut(s) 571, 2598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.