Protein NRDE2 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17712 AT3G17712 AT3G17712 AT3G17740 |
| fragaria_vesca | FvH4_5g17940 FvH4_5g17940 FvH4_5g17940 |
| malus_domestica | MD14G1242200.v1.1 |
| prunus_persica | Prupe.5G239800_v2.0.a1 |
| pyrus_communis | pycom14g20360 |
| rosa_chinensis | RchiOBHm_Chr7g0177661 |
| rosa_laevigata | RLG00000005516 |
| rosa_multiflora | Rmu_sc0004449.1_g000002 Rmu_ssc0000236.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00275680 |
| rosa_rugosa | Rorug06G0408300 |
| rosa_samantha | Rh7AG007800 Rh7BG007700 Rh7CG008200 Rh7DG007900 |
| rosa_wichuraiana | Rw7G000650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1035 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 388, 1585, 2925 |
| Acc36I | ACCTGC | 2 cut(s) | 1225, 1324 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1351 |
| AccBSI | CCGCTC | 1 cut(s) | 1361 |
| AccI | GTMKAC | 1 cut(s) | 183 |
| AccII | CGCG | 1 cut(s) | 308 |
| AclWI | GGATC | 4 cut(s) | 228, 241, 1259, 2638 |
| AcoI | YGGCCR | 2 cut(s) | 1353, 3022 |
| AcsI | RAATTY | 7 cut(s) | 508, 1382, 1664, 2662, 2882, 3270, 3426 |
| AcuI | CTGAAG | 2 cut(s) | 1734, 1875 |
| AcyI | GRCGYC | 1 cut(s) | 123 |
| AfaI | GTAC | 9 cut(s) | 189, 209, 623, 1184, 1621, 1656, 1946, 2730, 3450 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 339, 360, 904, 929, 1351, 2203, 3264, 3300 |
| AflII | CTTAAG | 1 cut(s) | 2128 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 16, 322 |
| AjnI | CCWGG | 4 cut(s) | 1151, 1197, 1784, 3263 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 77, 109, 863, 895, 1320, 1352, 1473, 1505 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2805, 2837 |
| Alw21I | GWGCWC | 5 cut(s) | 937, 1446, 1964, 2359, 2683 |
| Alw26I | GTCTC | 8 cut(s) | 64, 249, 309, 374, 452, 672, 1038, 2911 |
| AlwI | GGATC | 4 cut(s) | 228, 241, 1259, 2638 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 949 |
| Ama87I | CYCGRG | 2 cut(s) | 772, 828 |
| AoxI | GGCC | 7 cut(s) | 14, 191, 369, 435, 1353, 1971, 3022 |
| ApeKI | GCWGC | 8 cut(s) | 485, 755, 919, 1211, 2285, 2756, 2774, 2911 |
| ApoI | RAATTY | 7 cut(s) | 508, 1382, 1664, 2662, 2882, 3270, 3426 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3350, 3382 |
| AseI | ATTAAT | 1 cut(s) | 1061 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2493 |
| AspLEI | GCGC | 4 cut(s) | 308, 310, 657, 1487 |
| AspS9I | GGNCC | 6 cut(s) | 192, 369, 1497, 1972, 2181, 2511 |
| AsuC2I | CCSGG | 2 cut(s) | 505, 598 |
| AsuHPI | GGTGA | 4 cut(s) | 88, 713, 755, 1775 |
| AsuNHI | GCTAGC | 1 cut(s) | 2554 |
| AvaI | CYCGRG | 2 cut(s) | 772, 828 |
| AvaII | GGWCC | 3 cut(s) | 1497, 2181, 2511 |
| BalI | TGGCCA | 2 cut(s) | 1355, 3024 |
| BamHI | GGATCC | 1 cut(s) | 233 |
| BanII | GRGCYC | 2 cut(s) | 1964, 3140 |
| BbsI | GAAGAC | 2 cut(s) | 1013, 2024 |
| Bbv12I | GWGCWC | 5 cut(s) | 937, 1446, 1964, 2359, 2683 |
| BbvCI | CCTCAGC | 1 cut(s) | 2544 |
| BbvI | GCAGC | 8 cut(s) | 472, 742, 931, 1198, 2272, 2743, 2761, 2898 |
| BceAI | ACGGC | 6 cut(s) | 7, 110, 190, 206, 334, 2337 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 110, 144, 3134, 3168 |
| BciT130I | CCWGG | 4 cut(s) | 1153, 1199, 1786, 3265 |
| BciVI | GTATCC | 1 cut(s) | 682 |
| BclI | TGATCA | 3 cut(s) | 1825, 2446, 2746 |
| BcnI | CCSGG | 2 cut(s) | 505, 598 |
| BcoDI | GTCTC | 8 cut(s) | 64, 249, 309, 374, 452, 672, 1038, 2911 |
| BfmI | CTRYAG | 1 cut(s) | 451 |
| BfoI | RGCGCY | 2 cut(s) | 658, 1488 |
| BfrI | CTTAAG | 1 cut(s) | 2128 |
| BfuAI | ACCTGC | 2 cut(s) | 1225, 1324 |
| BfuI | GTATCC | 1 cut(s) | 682 |
| BglII | AGATCT | 1 cut(s) | 3370 |
| BisI | GCNGC | 9 cut(s) | 45, 486, 756, 920, 1212, 2286, 2757, 2775, 2912 |
| BlsI | GCNGC | 9 cut(s) | 46, 487, 757, 921, 1213, 2287, 2758, 2776, 2913 |
| BmcAI | AGTACT | 1 cut(s) | 3450 |
| Bme1390I | CCNGG | 6 cut(s) | 505, 598, 1153, 1199, 1786, 3265 |
| Bme18I | GGWCC | 3 cut(s) | 1497, 2181, 2511 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 16, 322 |
| BmeT110I | CYCGRG | 2 cut(s) | 772, 828 |
| BmgT120I | GGNCC | 6 cut(s) | 192, 369, 1497, 1972, 2181, 2511 |
| BmiI | GGNNCC | 3 cut(s) | 194, 235, 2182 |
| BmrFI | CCNGG | 6 cut(s) | 505, 598, 1153, 1199, 1786, 3265 |
| BmrI | ACTGGG | 1 cut(s) | 29 |
| BmsI | GCATC | 8 cut(s) | 550, 562, 865, 1719, 1824, 2377, 2898, 3206 |
| BmtI | GCTAGC | 1 cut(s) | 2558 |
| BmuI | ACTGGG | 1 cut(s) | 29 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3072 |
| BpiI | GAAGAC | 2 cut(s) | 1013, 2024 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 755, 787 |
| BpmI | CTGGAG | 3 cut(s) | 765, 1135, 1245 |
| Bpu10I | CCTNAGC | 3 cut(s) | 147, 2069, 2544 |
| BpuEI | CTTGAG | 1 cut(s) | 1679 |
| BpuMI | CCSGG | 2 cut(s) | 505, 598 |
| BsaAI | YACGTR | 2 cut(s) | 2264, 2732 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1824 |
| BsaHI | GRCGYC | 1 cut(s) | 123 |
| BsaI | GGTCTC | 1 cut(s) | 672 |
| BsaJI | CCNNGG | 6 cut(s) | 597, 1243, 1785, 2197, 2686, 3299 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 339, 360, 904, 929, 1351, 2203, 3264, 3300 |
| Bse118I | RCCGGY | 1 cut(s) | 332 |
| Bse1I | ACTGG | 5 cut(s) | 35, 354, 414, 782, 1765 |
| Bse3DI | GCAATG | 5 cut(s) | 462, 2081, 2604, 2847, 3222 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1824 |
| BseBI | CCWGG | 4 cut(s) | 1153, 1199, 1786, 3265 |
| BseDI | CCNNGG | 6 cut(s) | 597, 1243, 1785, 2197, 2686, 3299 |
| BseJI | GATNNNNATC | 1 cut(s) | 1824 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 339, 360, 904, 929, 1351, 2203, 3264, 3300 |
| BseMI | GCAATG | 5 cut(s) | 462, 2081, 2604, 2847, 3222 |
| BseNI | ACTGG | 5 cut(s) | 35, 354, 414, 782, 1765 |
| BsePI | GCGCGC | 1 cut(s) | 306 |
| BseRI | GAGGAG | 5 cut(s) | 188, 301, 1400, 1562, 2511 |
| BseXI | GCAGC | 8 cut(s) | 472, 742, 931, 1198, 2272, 2743, 2761, 2898 |
| BseYI | CCCAGC | 2 cut(s) | 195, 2949 |
| Bsh1236I | CGCG | 1 cut(s) | 308 |
| BshFI | GGCC | 7 cut(s) | 16, 193, 371, 437, 1355, 1973, 3024 |
| BsiHKAI | GWGCWC | 5 cut(s) | 937, 1446, 1964, 2359, 2683 |
| BsiHKCI | CYCGRG | 2 cut(s) | 772, 828 |
| BsiSI | CCGG | 4 cut(s) | 170, 333, 504, 597 |
| BsiWI | CGTACG | 2 cut(s) | 187, 207 |
| BslFI | GGGAC | 3 cut(s) | 53, 1894, 2194 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 339, 360, 904, 929, 1351, 2203, 3264, 3300 |
| BsmAI | GTCTC | 8 cut(s) | 64, 249, 309, 374, 452, 672, 1038, 2911 |
| BsmBI | CGTCTC | 1 cut(s) | 309 |
| BsmFI | GGGAC | 3 cut(s) | 53, 1894, 2194 |
| BsmI | GAATGC | 2 cut(s) | 1093, 1227 |
| BsnI | GGCC | 7 cut(s) | 16, 193, 371, 437, 1355, 1973, 3024 |
| Bso31I | GGTCTC | 1 cut(s) | 672 |
| BsoBI | CYCGRG | 2 cut(s) | 772, 828 |
| Bsp1286I | GDGCHC | 6 cut(s) | 937, 1446, 1964, 2359, 2683, 3140 |
| Bsp19I | CCATGG | 2 cut(s) | 2197, 3299 |
| BspANI | GGCC | 7 cut(s) | 16, 193, 371, 437, 1355, 1973, 3024 |
| BspFNI | CGCG | 1 cut(s) | 308 |
| BspHI | TCATGA | 2 cut(s) | 862, 2119 |
| BspLI | GGNNCC | 3 cut(s) | 194, 235, 2182 |
| BspMI | ACCTGC | 2 cut(s) | 1225, 1324 |
| BspOI | GCTAGC | 1 cut(s) | 2558 |
| BspPI | GGATC | 4 cut(s) | 228, 241, 1259, 2638 |
| BspQI | GCTCTTC | 1 cut(s) | 2295 |
| BspTI | CTTAAG | 1 cut(s) | 2128 |
| BspTNI | GGTCTC | 1 cut(s) | 672 |
| BsrBI | CCGCTC | 1 cut(s) | 1361 |
| BsrDI | GCAATG | 5 cut(s) | 462, 2081, 2604, 2847, 3222 |
| BsrFI | RCCGGY | 1 cut(s) | 332 |
| BsrI | ACTGG | 5 cut(s) | 35, 354, 414, 782, 1765 |
| BssAI | RCCGGY | 1 cut(s) | 332 |
| BssECI | CCNNGG | 6 cut(s) | 597, 1243, 1785, 2197, 2686, 3299 |
| BssHII | GCGCGC | 1 cut(s) | 306 |
| BssNI | GRCGYC | 1 cut(s) | 123 |
| BssT1I | CCWWGG | 4 cut(s) | 1243, 2197, 2686, 3299 |
| Bst2UI | CCWGG | 4 cut(s) | 1153, 1199, 1786, 3265 |
| Bst6I | CTCTTC | 7 cut(s) | 278, 290, 2295, 2416, 2452, 2529, 2781 |
| BstACI | GRCGYC | 1 cut(s) | 123 |
| BstAFI | CTTAAG | 1 cut(s) | 2128 |
| BstBAI | YACGTR | 2 cut(s) | 2264, 2732 |
| BstC8I | GCNNGC | 9 cut(s) | 244, 308, 937, 941, 1216, 2556, 2683, 3247, 3295 |
| BstDSI | CCRYGG | 2 cut(s) | 2197, 3299 |
| BstFNI | CGCG | 1 cut(s) | 308 |
| BstH2I | RGCGCY | 2 cut(s) | 658, 1488 |
| BstHHI | GCGC | 4 cut(s) | 308, 310, 657, 1487 |
| BstMAI | GTCTC | 8 cut(s) | 64, 249, 309, 374, 452, 672, 1038, 2911 |
| BstNI | CCWGG | 4 cut(s) | 1153, 1199, 1786, 3265 |
| BstNSI | RCATGY | 4 cut(s) | 1133, 1193, 1218, 3249 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3072 |
| BstSCI | CCNGG | 6 cut(s) | 503, 596, 1151, 1197, 1784, 3263 |
| BstSFI | CTRYAG | 1 cut(s) | 451 |
| BstUI | CGCG | 1 cut(s) | 308 |
| BstV1I | GCAGC | 8 cut(s) | 472, 742, 931, 1198, 2272, 2743, 2761, 2898 |
| BstV2I | GAAGAC | 2 cut(s) | 1013, 2024 |
| BstX2I | RGATCY | 3 cut(s) | 233, 1264, 3370 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1507 |
| BstYI | RGATCY | 3 cut(s) | 233, 1264, 3370 |
| BsuI | GTATCC | 1 cut(s) | 682 |
| BsuRI | GGCC | 7 cut(s) | 16, 193, 371, 437, 1355, 1973, 3024 |
| BtgI | CCRYGG | 2 cut(s) | 2197, 3299 |
| BtgZI | GCGATG | 2 cut(s) | 261, 3229 |
| BtsIMutI | CAGTG | 6 cut(s) | 361, 421, 1413, 1462, 2033, 2718 |
| BveI | ACCTGC | 2 cut(s) | 1225, 1324 |
| Cac8I | GCNNGC | 9 cut(s) | 244, 308, 937, 941, 1216, 2556, 2683, 3247, 3295 |
| CaiI | CAGNNNCTG | 1 cut(s) | 949 |
| CciI | TCATGA | 2 cut(s) | 862, 2119 |
| CfoI | GCGC | 4 cut(s) | 308, 310, 657, 1487 |
| Cfr10I | RCCGGY | 1 cut(s) | 332 |
| Cfr13I | GGNCC | 6 cut(s) | 192, 369, 1497, 1972, 2181, 2511 |
| CseI | GACGC | 2 cut(s) | 131, 1784 |
| Csp6I | GTAC | 9 cut(s) | 188, 208, 622, 1183, 1620, 1655, 1945, 2729, 3449 |
| CviQI | GTAC | 9 cut(s) | 188, 208, 622, 1183, 1620, 1655, 1945, 2729, 3449 |
| DraI | TTTAAA | 3 cut(s) | 514, 2376, 2647 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 388, 1585, 2925 |
| DriI | GACNNNNNGTC | 2 cut(s) | 16, 322 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 388, 1585, 2925 |
| EaeI | YGGCCR | 2 cut(s) | 1353, 3022 |
| Eam1104I | CTCTTC | 7 cut(s) | 278, 290, 2295, 2416, 2452, 2529, 2781 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 16, 322 |
| EarI | CTCTTC | 7 cut(s) | 278, 290, 2295, 2416, 2452, 2529, 2781 |
| EciI | GGCGGA | 1 cut(s) | 316 |
| Ecl136II | GAGCTC | 1 cut(s) | 1962 |
| Eco130I | CCWWGG | 4 cut(s) | 1243, 2197, 2686, 3299 |
| Eco24I | GRGCYC | 2 cut(s) | 1964, 3140 |
| Eco31I | GGTCTC | 1 cut(s) | 672 |
| Eco32I | GATATC | 1 cut(s) | 2034 |
| Eco47I | GGWCC | 3 cut(s) | 1497, 2181, 2511 |
| Eco53kI | GAGCTC | 1 cut(s) | 1962 |
| Eco57I | CTGAAG | 2 cut(s) | 1734, 1875 |
| Eco88I | CYCGRG | 2 cut(s) | 772, 828 |
| EcoICRI | GAGCTC | 1 cut(s) | 1962 |
| EcoRI | GAATTC | 1 cut(s) | 1382 |
| EcoRII | CCWGG | 4 cut(s) | 1151, 1197, 1784, 3263 |
| EcoRV | GATATC | 1 cut(s) | 2034 |
| EcoT14I | CCWWGG | 4 cut(s) | 1243, 2197, 2686, 3299 |
| EcoT22I | ATGCAT | 2 cut(s) | 577, 2604 |
| EcoT38I | GRGCYC | 2 cut(s) | 1964, 3140 |
| ErhI | CCWWGG | 4 cut(s) | 1243, 2197, 2686, 3299 |
| Esp3I | CGTCTC | 1 cut(s) | 309 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1473, 1505, 1893, 1925, 2413, 2445 |
| FaqI | GGGAC | 3 cut(s) | 53, 1894, 2194 |
| FauI | CCCGC | 4 cut(s) | 314, 1276, 2339, 3381 |
| FauNDI | CATATG | 1 cut(s) | 3229 |
| FbaI | TGATCA | 3 cut(s) | 1825, 2446, 2746 |
| FblI | GTMKAC | 1 cut(s) | 183 |
| Fnu4HI | GCNGC | 9 cut(s) | 45, 486, 756, 920, 1212, 2286, 2757, 2775, 2912 |
| FriOI | GRGCYC | 2 cut(s) | 1964, 3140 |
| Fsp4HI | GCNGC | 9 cut(s) | 45, 486, 756, 920, 1212, 2286, 2757, 2775, 2912 |
| GlaI | GCGC | 4 cut(s) | 307, 309, 656, 1486 |
| GluI | GCNGC | 9 cut(s) | 45, 486, 756, 920, 1212, 2286, 2757, 2775, 2912 |
| GsaI | CCCAGC | 2 cut(s) | 199, 2953 |
| GsuI | CTGGAG | 3 cut(s) | 765, 1135, 1245 |
| HaeII | RGCGCY | 2 cut(s) | 658, 1488 |
| HaeIII | GGCC | 7 cut(s) | 16, 193, 371, 437, 1355, 1973, 3024 |
| HapII | CCGG | 4 cut(s) | 170, 333, 504, 597 |
| HgaI | GACGC | 2 cut(s) | 131, 1784 |
| HhaI | GCGC | 4 cut(s) | 308, 310, 657, 1487 |
| Hin1I | GRCGYC | 1 cut(s) | 123 |
| Hin6I | GCGC | 4 cut(s) | 306, 308, 655, 1485 |
| HinP1I | GCGC | 4 cut(s) | 306, 308, 655, 1485 |
| HincII | GTYRAC | 2 cut(s) | 184, 2793 |
| HindII | GTYRAC | 2 cut(s) | 184, 2793 |
| HindIII | AAGCTT | 2 cut(s) | 516, 1716 |
| HpaI | GTTAAC | 1 cut(s) | 2793 |
| HpaII | CCGG | 4 cut(s) | 170, 333, 504, 597 |
| HphI | GGTGA | 4 cut(s) | 88, 713, 755, 1775 |
| Hpy166II | GTNNAC | 5 cut(s) | 184, 587, 665, 1500, 2793 |
| Hpy8I | GTNNAC | 5 cut(s) | 184, 587, 665, 1500, 2793 |
| Hpy99I | CGWCG | 6 cut(s) | 11, 22, 28, 125, 188, 394 |
| HpyCH4IV | ACGT | 5 cut(s) | 66, 186, 2263, 2731, 3038 |
| HpySE526I | ACGT | 5 cut(s) | 66, 186, 2263, 2731, 3038 |
| Hsp92I | GRCGYC | 1 cut(s) | 123 |
| HspAI | GCGC | 4 cut(s) | 306, 308, 655, 1485 |
| Ksp22I | TGATCA | 3 cut(s) | 1825, 2446, 2746 |
| KspAI | GTTAAC | 1 cut(s) | 2793 |
| LguI | GCTCTTC | 1 cut(s) | 2295 |
| LmnI | GCTCC | 7 cut(s) | 175, 303, 506, 853, 1413, 2524, 2551 |
| Lsp1109I | GCAGC | 8 cut(s) | 472, 742, 931, 1198, 2272, 2743, 2761, 2898 |
| LweI | GCATC | 8 cut(s) | 550, 562, 865, 1719, 1824, 2377, 2898, 3206 |
| MaeII | ACGT | 5 cut(s) | 66, 186, 2263, 2731, 3038 |
| MaeIII | GTNAC | 3 cut(s) | 765, 1989, 2341 |
| MbiI | CCGCTC | 1 cut(s) | 1361 |
| MfeI | CAATTG | 1 cut(s) | 2669 |
| MflI | RGATCY | 3 cut(s) | 233, 1264, 3370 |
| MhlI | GDGCHC | 6 cut(s) | 937, 1446, 1964, 2359, 2683, 3140 |
| MlsI | TGGCCA | 2 cut(s) | 1355, 3024 |
| MluNI | TGGCCA | 2 cut(s) | 1355, 3024 |
| MlyI | GAGTC | 5 cut(s) | 773, 820, 940, 1926, 2963 |
| MmeI | TCCRAC | 5 cut(s) | 108, 372, 1453, 1488, 1556 |
| Mox20I | TGGCCA | 2 cut(s) | 1355, 3024 |
| Mph1103I | ATGCAT | 2 cut(s) | 577, 2604 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2493 |
| MscI | TGGCCA | 2 cut(s) | 1355, 3024 |
| MslI | CAYNNNNRTG | 4 cut(s) | 861, 1563, 2026, 2906 |
| Msp20I | TGGCCA | 2 cut(s) | 1355, 3024 |
| MspA1I | CMGCKG | 1 cut(s) | 2756 |
| MspCI | CTTAAG | 1 cut(s) | 2128 |
| MspI | CCGG | 4 cut(s) | 170, 333, 504, 597 |
| MspR9I | CCNGG | 6 cut(s) | 505, 598, 1153, 1199, 1786, 3265 |
| MunI | CAATTG | 1 cut(s) | 2669 |
| Mva1269I | GAATGC | 2 cut(s) | 1093, 1227 |
| MvaI | CCWGG | 4 cut(s) | 1153, 1199, 1786, 3265 |
| MvnI | CGCG | 1 cut(s) | 308 |
| NciI | CCSGG | 2 cut(s) | 505, 598 |
| NcoI | CCATGG | 2 cut(s) | 2197, 3299 |
| NdeI | CATATG | 1 cut(s) | 3229 |
| NheI | GCTAGC | 1 cut(s) | 2554 |
| NlaIV | GGNNCC | 3 cut(s) | 194, 235, 2182 |
| NmuCI | GTSAC | 1 cut(s) | 765 |
| NsiI | ATGCAT | 2 cut(s) | 577, 2604 |
| NspI | RCATGY | 4 cut(s) | 1133, 1193, 1218, 3249 |
| PaeI | GCATGC | 2 cut(s) | 1218, 3249 |
| PagI | TCATGA | 2 cut(s) | 862, 2119 |
| PauI | GCGCGC | 1 cut(s) | 306 |
| PciSI | GCTCTTC | 1 cut(s) | 2295 |
| PctI | GAATGC | 2 cut(s) | 1093, 1227 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2493 |
| Pfl23II | CGTACG | 2 cut(s) | 187, 207 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1351 |
| PfoI | TCCNGGA | 1 cut(s) | 503 |
| PkrI | GCNGC | 9 cut(s) | 46, 487, 757, 921, 1213, 2287, 2758, 2776, 2913 |
| PleI | GAGTC | 5 cut(s) | 772, 820, 940, 1925, 2962 |
| PpsI | GAGTC | 5 cut(s) | 772, 820, 940, 1925, 2962 |
| Ppu21I | YACGTR | 2 cut(s) | 2264, 2732 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3072 |
| PshBI | ATTAAT | 1 cut(s) | 1061 |
| PsiI | TTATAA | 1 cut(s) | 1035 |
| Psp124BI | GAGCTC | 1 cut(s) | 1964 |
| Psp6I | CCWGG | 4 cut(s) | 1151, 1197, 1784, 3263 |
| PspFI | CCCAGC | 2 cut(s) | 195, 2949 |
| PspGI | CCWGG | 4 cut(s) | 1151, 1197, 1784, 3263 |
| PspLI | CGTACG | 2 cut(s) | 187, 207 |
| PspN4I | GGNNCC | 3 cut(s) | 194, 235, 2182 |
| PspPI | GGNCC | 6 cut(s) | 192, 369, 1497, 1972, 2181, 2511 |
| PstNI | CAGNNNCTG | 1 cut(s) | 949 |
| PsuI | RGATCY | 3 cut(s) | 233, 1264, 3370 |
| PteI | GCGCGC | 1 cut(s) | 306 |
| RsaI | GTAC | 9 cut(s) | 189, 209, 623, 1184, 1621, 1656, 1946, 2730, 3450 |
| RsaNI | GTAC | 9 cut(s) | 188, 208, 622, 1183, 1620, 1655, 1945, 2729, 3449 |
| RseI | CAYNNNNRTG | 4 cut(s) | 861, 1563, 2026, 2906 |
| SacI | GAGCTC | 1 cut(s) | 1964 |
| SalI | GTCGAC | 1 cut(s) | 182 |
| SapI | GCTCTTC | 1 cut(s) | 2295 |
| SatI | GCNGC | 9 cut(s) | 45, 486, 756, 920, 1212, 2286, 2757, 2775, 2912 |
| Sau96I | GGNCC | 6 cut(s) | 192, 369, 1497, 1972, 2181, 2511 |
| ScaI | AGTACT | 1 cut(s) | 3450 |
| SchI | GAGTC | 5 cut(s) | 773, 820, 940, 1926, 2963 |
| ScrFI | CCNGG | 6 cut(s) | 505, 598, 1153, 1199, 1786, 3265 |
| SduI | GDGCHC | 6 cut(s) | 937, 1446, 1964, 2359, 2683, 3140 |
| SfaNI | GCATC | 8 cut(s) | 550, 562, 865, 1719, 1824, 2377, 2898, 3206 |
| SfcI | CTRYAG | 1 cut(s) | 451 |
| SinI | GGWCC | 3 cut(s) | 1497, 2181, 2511 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 861, 1563, 2026, 2906 |
| SmlI | CTYRAG | 2 cut(s) | 1658, 2128 |
| SmoI | CTYRAG | 2 cut(s) | 1658, 2128 |
| SphI | GCATGC | 2 cut(s) | 1218, 3249 |
| SspI | AATATT | 1 cut(s) | 2443 |
| SstI | GAGCTC | 1 cut(s) | 1964 |
| StyD4I | CCNGG | 6 cut(s) | 503, 596, 1151, 1197, 1784, 3263 |
| StyI | CCWWGG | 4 cut(s) | 1243, 2197, 2686, 3299 |
| TaiI | ACGT | 5 cut(s) | 69, 189, 2266, 2734, 3041 |
| TaqI | TCGA | 5 cut(s) | 183, 344, 469, 792, 1913 |
| TaqII | GACCGA | 1 cut(s) | 2565 |
| TatI | WGTACW | 3 cut(s) | 621, 1654, 3448 |
| TauI | GCSGC | 1 cut(s) | 47 |
| TscAI | CASTG | 6 cut(s) | 361, 421, 1420, 1462, 2033, 2718 |
| TseFI | GTSAC | 1 cut(s) | 765 |
| TseI | GCWGC | 8 cut(s) | 485, 755, 919, 1211, 2285, 2756, 2774, 2911 |
| Tsp45I | GTSAC | 1 cut(s) | 765 |
| TspGWI | ACGGA | 3 cut(s) | 100, 734, 2631 |
| TspRI | CASTG | 6 cut(s) | 361, 421, 1420, 1462, 2033, 2718 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1351 |
| Vha464I | CTTAAG | 1 cut(s) | 2128 |
| VpaK11BI | GGWCC | 3 cut(s) | 1497, 2181, 2511 |
| VspI | ATTAAT | 1 cut(s) | 1061 |
| XapI | RAATTY | 7 cut(s) | 508, 1382, 1664, 2662, 2882, 3270, 3426 |
| XbaI | TCTAGA | 1 cut(s) | 2824 |
| XceI | RCATGY | 4 cut(s) | 1133, 1193, 1218, 3249 |
| XmiI | GTMKAC | 1 cut(s) | 183 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2493 |
| ZrmI | AGTACT | 1 cut(s) | 3450 |
| Zsp2I | ATGCAT | 2 cut(s) | 577, 2604 |