Protein NRDE2 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17712 AT3G17712 AT3G17712 AT3G17740 |
| fragaria_vesca | FvH4_5g17940 FvH4_5g17940 FvH4_5g17940 |
| malus_domestica | MD14G1242200.v1.1 |
| prunus_persica | Prupe.5G239800_v2.0.a1 |
| pyrus_communis | pycom14g20360 |
| rosa_chinensis | RchiOBHm_Chr7g0177661 |
| rosa_laevigata | RLG00000005516 |
| rosa_multiflora | Rmu_sc0004449.1_g000002 Rmu_ssc0000236.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00275680 |
| rosa_rugosa | Rorug06G0408300 |
| rosa_samantha | Rh7AG007800 Rh7BG007700 Rh7CG008200 Rh7DG007900 |
| rosa_wichuraiana | Rw7G000650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1624 |
| Acc36I | ACCTGC | 1 cut(s) | 1264 |
| Acc65I | GGTACC | 1 cut(s) | 2213 |
| AccB1I | GGYRCC | 3 cut(s) | 229, 1523, 2213 |
| AccII | CGCG | 1 cut(s) | 480 |
| AciI | CCGC | 8 cut(s) | 185, 206, 478, 539, 929, 1019, 3301, 3421 |
| AclWI | GGATC | 6 cut(s) | 270, 283, 1835, 3178, 3178, 3191 |
| AcoI | YGGCCR | 2 cut(s) | 1392, 3055 |
| AcuI | CTGAAG | 3 cut(s) | 807, 1773, 3273 |
| AcyI | GRCGYC | 1 cut(s) | 156 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 414, 968, 1533, 2061, 2835, 3333 |
| AhlI | ACTAGT | 1 cut(s) | 1796 |
| AjnI | CCWGG | 2 cut(s) | 1236, 1823 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 110, 142, 440, 472, 1512, 1544 |
| Alw21I | GWGCWC | 6 cut(s) | 709, 1485, 1941, 1997, 2716, 2883 |
| Alw26I | GTCTC | 9 cut(s) | 85, 291, 428, 506, 720, 1077, 1583, 2573, 2944 |
| AlwI | GGATC | 6 cut(s) | 270, 283, 1835, 3178, 3178, 3191 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 38, 988, 1356, 1474 |
| AoxI | GGCC | 5 cut(s) | 370, 423, 1392, 2004, 3055 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3383, 3415 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2463, 2526 |
| Asp718I | GGTACC | 1 cut(s) | 2213 |
| AspLEI | GCGC | 2 cut(s) | 974, 3249 |
| AspS9I | GGNCC | 4 cut(s) | 357, 423, 1536, 2005 |
| AsuHPI | GGTGA | 5 cut(s) | 121, 186, 761, 1814, 2972 |
| AsuII | TTCGAA | 1 cut(s) | 2354 |
| AvaII | GGWCC | 2 cut(s) | 357, 1536 |
| BaeGI | GKGCMC | 1 cut(s) | 1528 |
| BalI | TGGCCA | 2 cut(s) | 1394, 3057 |
| BamHI | GGATCC | 2 cut(s) | 275, 3183 |
| BanI | GGYRCC | 3 cut(s) | 229, 1523, 2213 |
| BanII | GRGCYC | 1 cut(s) | 1997 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 837, 869 |
| BbsI | GAAGAC | 2 cut(s) | 1050, 1296 |
| Bbv12I | GWGCWC | 6 cut(s) | 709, 1485, 1941, 1997, 2716, 2883 |
| BceAI | ACGGC | 4 cut(s) | 143, 217, 357, 2883 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 602, 636 |
| BciT130I | CCWGG | 2 cut(s) | 1238, 1825 |
| BciVI | GTATCC | 1 cut(s) | 1113 |
| BclI | TGATCA | 2 cut(s) | 2479, 2779 |
| BcoDI | GTCTC | 9 cut(s) | 85, 291, 428, 506, 720, 1077, 1583, 2573, 2944 |
| BcuI | ACTAGT | 1 cut(s) | 1796 |
| BfaI | CTAG | 7 cut(s) | 1322, 1772, 1797, 2018, 2309, 2858, 3297 |
| BfmI | CTRYAG | 5 cut(s) | 39, 505, 1357, 2230, 2805 |
| BfoI | RGCGCY | 2 cut(s) | 975, 3250 |
| BfuAI | ACCTGC | 1 cut(s) | 1264 |
| BfuI | GTATCC | 1 cut(s) | 1113 |
| BglII | AGATCT | 3 cut(s) | 1303, 2389, 3403 |
| BlpI | GCTNAGC | 1 cut(s) | 1023 |
| BmcAI | AGTACT | 2 cut(s) | 855, 1979 |
| Bme1390I | CCNGG | 2 cut(s) | 1238, 1825 |
| Bme18I | GGWCC | 2 cut(s) | 357, 1536 |
| BmgT120I | GGNCC | 4 cut(s) | 357, 423, 1536, 2005 |
| BmiI | GGNNCC | 7 cut(s) | 231, 277, 581, 1525, 1632, 2215, 3185 |
| BmrFI | CCNGG | 2 cut(s) | 1238, 1825 |
| BmsI | GCATC | 8 cut(s) | 246, 598, 610, 1758, 1863, 2305, 2622, 2931 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3105 |
| BpiI | GAAGAC | 2 cut(s) | 1050, 1296 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2813, 2845 |
| BpmI | CTGGAG | 2 cut(s) | 1031, 1284 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2102, 2650 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1023 |
| Bpu14I | TTCGAA | 1 cut(s) | 2354 |
| BpuEI | CTTGAG | 4 cut(s) | 799, 1174, 2011, 3350 |
| BsaAI | YACGTR | 1 cut(s) | 2297 |
| BsaHI | GRCGYC | 1 cut(s) | 156 |
| BsaI | GGTCTC | 1 cut(s) | 720 |
| BsaJI | CCNNGG | 6 cut(s) | 373, 1528, 2060, 2719, 3187, 3332 |
| BsaWI | WCCGGW | 2 cut(s) | 733, 746 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 218, 248, 2941, 2971 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 414, 968, 1533, 2061, 2835, 3333 |
| Bse1I | ACTGG | 4 cut(s) | 113, 603, 993, 1014 |
| Bse3DI | GCAATG | 2 cut(s) | 2114, 3255 |
| BseBI | CCWGG | 2 cut(s) | 1238, 1825 |
| BseDI | CCNNGG | 6 cut(s) | 373, 1528, 2060, 2719, 3187, 3332 |
| BseGI | GGATG | 7 cut(s) | 503, 634, 779, 1878, 2431, 2618, 2840 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 414, 968, 1533, 2061, 2835, 3333 |
| BseMI | GCAATG | 2 cut(s) | 2114, 3255 |
| BseMII | CTCAG | 8 cut(s) | 1014, 1446, 1992, 2082, 2568, 2699, 3246, 3431 |
| BseNI | ACTGG | 4 cut(s) | 113, 603, 993, 1014 |
| BseRI | GAGGAG | 8 cut(s) | 20, 236, 239, 358, 361, 1439, 1601, 1715 |
| BseSI | GKGCMC | 1 cut(s) | 1528 |
| BseYI | CCCAGC | 1 cut(s) | 2982 |
| BsgI | GTGCAG | 1 cut(s) | 1578 |
| Bsh1236I | CGCG | 1 cut(s) | 480 |
| Bsh1285I | CGRYCG | 1 cut(s) | 478 |
| BshFI | GGCC | 5 cut(s) | 372, 425, 1394, 2006, 3057 |
| BshNI | GGYRCC | 3 cut(s) | 229, 1523, 2213 |
| BsiEI | CGRYCG | 1 cut(s) | 478 |
| BsiHKAI | GWGCWC | 6 cut(s) | 709, 1485, 1941, 1997, 2716, 2883 |
| BsiSI | CCGG | 2 cut(s) | 734, 747 |
| BslFI | GGGAC | 3 cut(s) | 86, 220, 704 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 414, 968, 1533, 2061, 2835, 3333 |
| BsmAI | GTCTC | 9 cut(s) | 85, 291, 428, 506, 720, 1077, 1583, 2573, 2944 |
| BsmBI | CGTCTC | 2 cut(s) | 85, 2573 |
| BsmFI | GGGAC | 3 cut(s) | 86, 220, 704 |
| BsmI | GAATGC | 1 cut(s) | 380 |
| BsnI | GGCC | 5 cut(s) | 372, 425, 1394, 2006, 3057 |
| Bso31I | GGTCTC | 1 cut(s) | 720 |
| Bsp119I | TTCGAA | 1 cut(s) | 2354 |
| Bsp1286I | GDGCHC | 7 cut(s) | 709, 1485, 1528, 1941, 1997, 2716, 2883 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1023 |
| Bsp19I | CCATGG | 1 cut(s) | 3332 |
| BspACI | CCGC | 8 cut(s) | 185, 206, 478, 539, 929, 1019, 3301, 3421 |
| BspANI | GGCC | 5 cut(s) | 372, 425, 1394, 2006, 3057 |
| BspCNI | CTCAG | 8 cut(s) | 1015, 1447, 1993, 2083, 2569, 2700, 3245, 3432 |
| BspFNI | CGCG | 1 cut(s) | 480 |
| BspLI | GGNNCC | 7 cut(s) | 231, 277, 581, 1525, 1632, 2215, 3185 |
| BspMAI | CTGCAG | 2 cut(s) | 43, 2809 |
| BspMI | ACCTGC | 1 cut(s) | 1264 |
| BspPI | GGATC | 6 cut(s) | 270, 283, 1835, 3178, 3178, 3191 |
| BspQI | GCTCTTC | 1 cut(s) | 2328 |
| BspT104I | TTCGAA | 1 cut(s) | 2354 |
| BspT107I | GGYRCC | 3 cut(s) | 229, 1523, 2213 |
| BspTNI | GGTCTC | 1 cut(s) | 720 |
| BsrDI | GCAATG | 2 cut(s) | 2114, 3255 |
| BsrI | ACTGG | 4 cut(s) | 113, 603, 993, 1014 |
| BssECI | CCNNGG | 6 cut(s) | 373, 1528, 2060, 2719, 3187, 3332 |
| BssNI | GRCGYC | 1 cut(s) | 156 |
| BssT1I | CCWWGG | 3 cut(s) | 1528, 2719, 3332 |
| Bst2UI | CCWGG | 2 cut(s) | 1238, 1825 |
| Bst6I | CTCTTC | 9 cut(s) | 68, 213, 323, 1065, 1839, 2328, 2449, 2485, 2814 |
| BstACI | GRCGYC | 1 cut(s) | 156 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1892 |
| BstBAI | YACGTR | 1 cut(s) | 2297 |
| BstBI | TTCGAA | 1 cut(s) | 2354 |
| BstC8I | GCNNGC | 9 cut(s) | 523, 705, 709, 1255, 1374, 1378, 2716, 3280, 3328 |
| BstDSI | CCRYGG | 4 cut(s) | 373, 2060, 3187, 3332 |
| BstF5I | GGATG | 7 cut(s) | 503, 634, 779, 1878, 2431, 2618, 2840 |
| BstFNI | CGCG | 1 cut(s) | 480 |
| BstH2I | RGCGCY | 2 cut(s) | 975, 3250 |
| BstHHI | GCGC | 2 cut(s) | 974, 3249 |
| BstMAI | GTCTC | 9 cut(s) | 85, 291, 428, 506, 720, 1077, 1583, 2573, 2944 |
| BstMCI | CGRYCG | 1 cut(s) | 478 |
| BstNI | CCWGG | 2 cut(s) | 1238, 1825 |
| BstNSI | RCATGY | 3 cut(s) | 1232, 1257, 3282 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3105 |
| BstSCI | CCNGG | 2 cut(s) | 1236, 1823 |
| BstSFI | CTRYAG | 5 cut(s) | 39, 505, 1357, 2230, 2805 |
| BstSLI | GKGCMC | 1 cut(s) | 1528 |
| BstUI | CGCG | 1 cut(s) | 480 |
| BstV2I | GAAGAC | 2 cut(s) | 1050, 1296 |
| BstX2I | RGATCY | 5 cut(s) | 275, 1303, 2389, 3183, 3403 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1546 |
| BstYI | RGATCY | 5 cut(s) | 275, 1303, 2389, 3183, 3403 |
| BsuI | GTATCC | 1 cut(s) | 1113 |
| BsuRI | GGCC | 5 cut(s) | 372, 425, 1394, 2006, 3057 |
| BtgI | CCRYGG | 4 cut(s) | 373, 2060, 3187, 3332 |
| BtgZI | GCGATG | 4 cut(s) | 303, 816, 2645, 3100 |
| BtsCI | GGATG | 7 cut(s) | 503, 634, 779, 1878, 2431, 2618, 2840 |
| BtsI | GCAGTG | 2 cut(s) | 1395, 2611 |
| BtsIMutI | CAGTG | 7 cut(s) | 106, 596, 831, 986, 1395, 1452, 2611 |
| BveI | ACCTGC | 1 cut(s) | 1264 |
| Cac8I | GCNNGC | 9 cut(s) | 523, 705, 709, 1255, 1374, 1378, 2716, 3280, 3328 |
| CaiI | CAGNNNCTG | 4 cut(s) | 38, 988, 1356, 1474 |
| CfoI | GCGC | 2 cut(s) | 974, 3249 |
| Cfr13I | GGNCC | 4 cut(s) | 357, 423, 1536, 2005 |
| CseI | GACGC | 2 cut(s) | 88, 164 |
| DraI | TTTAAA | 2 cut(s) | 1662, 3036 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1624 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1624 |
| EaeI | YGGCCR | 2 cut(s) | 1392, 3055 |
| Eam1104I | CTCTTC | 9 cut(s) | 68, 213, 323, 1065, 1839, 2328, 2449, 2485, 2814 |
| EarI | CTCTTC | 9 cut(s) | 68, 213, 323, 1065, 1839, 2328, 2449, 2485, 2814 |
| EciI | GGCGGA | 1 cut(s) | 3316 |
| Ecl136II | GAGCTC | 1 cut(s) | 1995 |
| Eco130I | CCWWGG | 3 cut(s) | 1528, 2719, 3332 |
| Eco24I | GRGCYC | 1 cut(s) | 1997 |
| Eco31I | GGTCTC | 1 cut(s) | 720 |
| Eco32I | GATATC | 1 cut(s) | 2067 |
| Eco47I | GGWCC | 2 cut(s) | 357, 1536 |
| Eco53kI | GAGCTC | 1 cut(s) | 1995 |
| Eco57I | CTGAAG | 3 cut(s) | 807, 1773, 3273 |
| EcoICRI | GAGCTC | 1 cut(s) | 1995 |
| EcoRI | GAATTC | 2 cut(s) | 1421, 2350 |
| EcoRII | CCWGG | 2 cut(s) | 1236, 1823 |
| EcoRV | GATATC | 1 cut(s) | 2067 |
| EcoT14I | CCWWGG | 3 cut(s) | 1528, 2719, 3332 |
| EcoT22I | ATGCAT | 2 cut(s) | 625, 2637 |
| EcoT38I | GRGCYC | 1 cut(s) | 1997 |
| ErhI | CCWWGG | 3 cut(s) | 1528, 2719, 3332 |
| Esp3I | CGTCTC | 2 cut(s) | 85, 2573 |
| FalI | AAGNNNNNCTT | 5 cut(s) | 1512, 1544, 2446, 2478, 3462 |
| FaqI | GGGAC | 3 cut(s) | 86, 220, 704 |
| FauI | CCCGC | 2 cut(s) | 192, 3414 |
| FauNDI | CATATG | 2 cut(s) | 2798, 3262 |
| FbaI | TGATCA | 2 cut(s) | 2479, 2779 |
| FokI | GGATG | 7 cut(s) | 510, 641, 766, 1885, 2438, 2605, 2847 |
| FriOI | GRGCYC | 1 cut(s) | 1997 |
| FspBI | CTAG | 7 cut(s) | 1322, 1772, 1797, 2018, 2309, 2858, 3297 |
| GlaI | GCGC | 2 cut(s) | 973, 3248 |
| GsaI | CCCAGC | 1 cut(s) | 2986 |
| GsuI | CTGGAG | 2 cut(s) | 1031, 1284 |
| HaeII | RGCGCY | 2 cut(s) | 975, 3250 |
| HaeIII | GGCC | 5 cut(s) | 372, 425, 1394, 2006, 3057 |
| HapII | CCGG | 2 cut(s) | 734, 747 |
| HgaI | GACGC | 2 cut(s) | 88, 164 |
| HhaI | GCGC | 2 cut(s) | 974, 3249 |
| Hin1I | GRCGYC | 1 cut(s) | 156 |
| Hin6I | GCGC | 2 cut(s) | 972, 3247 |
| HinP1I | GCGC | 2 cut(s) | 972, 3247 |
| HincII | GTYRAC | 3 cut(s) | 1972, 2687, 2826 |
| HindII | GTYRAC | 3 cut(s) | 1972, 2687, 2826 |
| HindIII | AAGCTT | 2 cut(s) | 1755, 2460 |
| HpaI | GTTAAC | 1 cut(s) | 2826 |
| HpaII | CCGG | 2 cut(s) | 734, 747 |
| HphI | GGTGA | 5 cut(s) | 121, 186, 761, 1814, 2972 |
| Hpy166II | GTNNAC | 7 cut(s) | 635, 1466, 1539, 1916, 1972, 2687, 2826 |
| Hpy8I | GTNNAC | 7 cut(s) | 635, 1466, 1539, 1916, 1972, 2687, 2826 |
| Hpy99I | CGWCG | 1 cut(s) | 158 |
| HpyCH4IV | ACGT | 3 cut(s) | 56, 516, 2296 |
| HpySE526I | ACGT | 3 cut(s) | 56, 516, 2296 |
| Hsp92I | GRCGYC | 1 cut(s) | 156 |
| HspAI | GCGC | 2 cut(s) | 972, 3247 |
| KpnI | GGTACC | 1 cut(s) | 2217 |
| Ksp22I | TGATCA | 2 cut(s) | 2479, 2779 |
| KspAI | GTTAAC | 1 cut(s) | 2826 |
| LguI | GCTCTTC | 1 cut(s) | 2328 |
| LmnI | GCTCC | 4 cut(s) | 377, 892, 2886, 3430 |
| LweI | GCATC | 8 cut(s) | 246, 598, 610, 1758, 1863, 2305, 2622, 2931 |
| MaeI | CTAG | 7 cut(s) | 1322, 1772, 1797, 2018, 2309, 2858, 3297 |
| MaeII | ACGT | 3 cut(s) | 56, 516, 2296 |
| MaeIII | GTNAC | 8 cut(s) | 57, 192, 736, 1142, 2374, 2414, 2591, 2662 |
| MfeI | CAATTG | 1 cut(s) | 2702 |
| MflI | RGATCY | 5 cut(s) | 275, 1303, 2389, 3183, 3403 |
| MhlI | GDGCHC | 7 cut(s) | 709, 1485, 1528, 1941, 1997, 2716, 2883 |
| MlsI | TGGCCA | 2 cut(s) | 1394, 3057 |
| MluNI | TGGCCA | 2 cut(s) | 1394, 3057 |
| MlyI | GAGTC | 2 cut(s) | 422, 2996 |
| MmeI | TCCRAC | 4 cut(s) | 1492, 1527, 1608, 1818 |
| Mox20I | TGGCCA | 2 cut(s) | 1394, 3057 |
| Mph1103I | ATGCAT | 2 cut(s) | 625, 2637 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2463, 2526 |
| MscI | TGGCCA | 2 cut(s) | 1394, 3057 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1602, 2939, 2958 |
| Msp20I | TGGCCA | 2 cut(s) | 1394, 3057 |
| MspA1I | CMGCKG | 1 cut(s) | 2367 |
| MspI | CCGG | 2 cut(s) | 734, 747 |
| MspR9I | CCNGG | 2 cut(s) | 1238, 1825 |
| MunI | CAATTG | 1 cut(s) | 2702 |
| Mva1269I | GAATGC | 1 cut(s) | 380 |
| MvaI | CCWGG | 2 cut(s) | 1238, 1825 |
| MvnI | CGCG | 1 cut(s) | 480 |
| NcoI | CCATGG | 1 cut(s) | 3332 |
| NdeI | CATATG | 2 cut(s) | 2798, 3262 |
| NlaIV | GGNNCC | 7 cut(s) | 231, 277, 581, 1525, 1632, 2215, 3185 |
| NmuCI | GTSAC | 3 cut(s) | 57, 192, 2414 |
| NsiI | ATGCAT | 2 cut(s) | 625, 2637 |
| NspI | RCATGY | 3 cut(s) | 1232, 1257, 3282 |
| NspV | TTCGAA | 1 cut(s) | 2354 |
| PaeI | GCATGC | 2 cut(s) | 1257, 3282 |
| PciSI | GCTCTTC | 1 cut(s) | 2328 |
| PctI | GAATGC | 1 cut(s) | 380 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2463, 2526 |
| PleI | GAGTC | 2 cut(s) | 422, 2995 |
| PpsI | GAGTC | 2 cut(s) | 422, 2995 |
| Ppu21I | YACGTR | 1 cut(s) | 2297 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3105 |
| Psp124BI | GAGCTC | 1 cut(s) | 1997 |
| Psp6I | CCWGG | 2 cut(s) | 1236, 1823 |
| PspFI | CCCAGC | 1 cut(s) | 2982 |
| PspGI | CCWGG | 2 cut(s) | 1236, 1823 |
| PspN4I | GGNNCC | 7 cut(s) | 231, 277, 581, 1525, 1632, 2215, 3185 |
| PspPI | GGNCC | 4 cut(s) | 357, 423, 1536, 2005 |
| PstI | CTGCAG | 2 cut(s) | 43, 2809 |
| PstNI | CAGNNNCTG | 4 cut(s) | 38, 988, 1356, 1474 |
| PsuI | RGATCY | 5 cut(s) | 275, 1303, 2389, 3183, 3403 |
| PvuII | CAGCTG | 1 cut(s) | 2367 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1602, 2939, 2958 |
| SacI | GAGCTC | 1 cut(s) | 1997 |
| SapI | GCTCTTC | 1 cut(s) | 2328 |
| Sau96I | GGNCC | 4 cut(s) | 357, 423, 1536, 2005 |
| ScaI | AGTACT | 2 cut(s) | 855, 1979 |
| SchI | GAGTC | 2 cut(s) | 422, 2996 |
| ScrFI | CCNGG | 2 cut(s) | 1238, 1825 |
| SduI | GDGCHC | 7 cut(s) | 709, 1485, 1528, 1941, 1997, 2716, 2883 |
| SfaNI | GCATC | 8 cut(s) | 246, 598, 610, 1758, 1863, 2305, 2622, 2931 |
| SfcI | CTRYAG | 5 cut(s) | 39, 505, 1357, 2230, 2805 |
| SfuI | TTCGAA | 1 cut(s) | 2354 |
| SinI | GGWCC | 2 cut(s) | 357, 1536 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1602, 2939, 2958 |
| SmlI | CTYRAG | 4 cut(s) | 814, 1189, 1990, 3365 |
| SmoI | CTYRAG | 4 cut(s) | 814, 1189, 1990, 3365 |
| SpeI | ACTAGT | 1 cut(s) | 1796 |
| SphI | GCATGC | 2 cut(s) | 1257, 3282 |
| SsiI | CCGC | 8 cut(s) | 185, 206, 478, 539, 929, 1019, 3301, 3421 |
| SspI | AATATT | 2 cut(s) | 2476, 3012 |
| SspMI | CTAG | 7 cut(s) | 1322, 1772, 1797, 2018, 2309, 2858, 3297 |
| SstI | GAGCTC | 1 cut(s) | 1997 |
| StyD4I | CCNGG | 2 cut(s) | 1236, 1823 |
| StyI | CCWWGG | 3 cut(s) | 1528, 2719, 3332 |
| TaiI | ACGT | 3 cut(s) | 59, 519, 2299 |
| TaqI | TCGA | 5 cut(s) | 398, 1946, 2354, 2386, 3313 |
| TatI | WGTACW | 6 cut(s) | 70, 669, 853, 1977, 2746, 3481 |
| TauI | GCSGC | 1 cut(s) | 1022 |
| TscAI | CASTG | 7 cut(s) | 113, 603, 831, 993, 1402, 1459, 2611 |
| TseFI | GTSAC | 3 cut(s) | 57, 192, 2414 |
| Tsp45I | GTSAC | 3 cut(s) | 57, 192, 2414 |
| TspGWI | ACGGA | 8 cut(s) | 133, 180, 349, 782, 2049, 2597, 3006, 3176 |
| TspRI | CASTG | 7 cut(s) | 113, 603, 831, 993, 1402, 1459, 2611 |
| VpaK11BI | GGWCC | 2 cut(s) | 357, 1536 |
| XbaI | TCTAGA | 1 cut(s) | 2857 |
| XceI | RCATGY | 3 cut(s) | 1232, 1257, 3282 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2463, 2526 |
| XspI | CTAG | 7 cut(s) | 1322, 1772, 1797, 2018, 2309, 2858, 3297 |
| ZrmI | AGTACT | 2 cut(s) | 855, 1979 |
| Zsp2I | ATGCAT | 2 cut(s) | 625, 2637 |