AT3G17740

Protein NRDE2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010115
Physical Location & Seq
Reverse (-)
6067684 .. 6072856
5173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17740.1

Sequence Viewer

Length: 3450 bp
ATGTCGAATACACCAGAAGACGGCGACGGAGCACAGGTAACTACAGGCGGCTTGTTCCCCGTCTTCCCTACTTCGGCGAACTCCATCTCAGCTATTTCGAATGCTCCTCAATGGCTTCGCAACGCTAGCTTCACTACGGATCTCTCTGTCATCAACGCTGCCGCTTCGACGGCTCCTTCCTCATCCGAGGTCGAGGCTGGAGACGACGAAGATGAAGAAGGAGGAGCTGATGGAAATATCGGTTTAGCTAATCAGGCTAGGGTTTATAATTTGGTTGAAGAAGAAGGGTCTTTGGAGTCTGATGACGACAAGGTAAAGAGGAAGCGAGAGAAAAAGAAGAAACGGAAGAGTGATAATGCTTCGGATGAATCTCGTTCTCGTAAATCTGATGAATACTATTCGAAACCTGTGAAGGATTATTACTTGGACACTCGTCCTGATCCAGATAATCTGGCTTATGGCTCTATTTACAGGATGAATGTTCCTCGTTATAAACTTGACAATTCTCAGAGAGTTCCAGGGTCAGGTTCTCTGAGGTTTTATTTGCGGAATCGACGTAGTTCTATGCTTGACACAGAGATTGATATTGATTCTTTGGAGGGGAGAGCAAAGTCTGATACCCGATACTGGTATGCAAAACATGCTGCCATGGAACGCAACAAGAATTTCAAGCGTATTCGTTTATCTGCTGCAAGTGAAGCTGTGGATTCTTCCTTTGATAATTTCATTCCACTGGAGGAAGACGTGACTGTTCCAGAAAGTGACGAAGAAGATGTTTTATCAAAGGACTCAATGATTGGAGCATCATGGGAGGATGAAGTGCTGAATAAAACACGGGAGTTCAACAGAGTGACGAGAGAACGTCCCCATGATGCAAAGGCATGGCTGGCATTTGCTGATTTTCAAGACAAGGTTTCAAGTATGCAATCTCAGAAAGGAGTTCGCCTGCAGACTTTAGAGAAAAAGATTAGTATACTTGAGAAGGCTTTTGAGCTGAACCCAGATAGCGAAGAACTGTTGCTTGCTCTGCTCAAGGCATACCGAAGCAGAGACAACGCTGATGTACTAATCAGTAGGTGGGAAAAGGCACTTATGCAGAATTCCGCAAGCTACAAATTATGGAGGGAGTTTTTATGTGTTGTTCAAGGGGAGTTCTCCAGATTCAAAGTATCAGAAGTGAGGAGGCTGTATTCTTATGCGATCCAGGCTCTTTCTTCTGCTTGCAGCAAGCGACATAGGCAGGTGGATACAACATCTGAACCATTGGATTCTGCTGCCATCCAACAGGAACTCGTTCTAGTCGATATGCTAGTTAGCCTCTGCAGGTTTGAGTGGCAGGCTGGTTACCAGGAGCTGGCCACAGCGTTACTTCAAGCCGAAGTGGAATTTAGCATCTTTTCTCCATCTTTGTTGCTAACTGAACAGAGTAAATTACGACTGTTTGAGCACTTTTGGAGCAGTAATGGTGCTAGAGTTGGAGAAGAAGGAGCTTTTGGATGGTTATTGTGGCTGGAGAAAGAGGAGGAAAACAGGCAGAAAATTTTGAAAGAAGAATCCTCTGATGACAATGAAGTAGGTGGTTGGACAGGTTGGACAGAACAGGTCTCAGGTAGAAATGGAGATGATATTGCTTCAGCTAACACTGGAGAGGTCGATGTTGATCGGAAGGGTCTGGATGAGGAAATGGAAGACGAGAATAGCAAACCTGAAGATGACACCGAAGCTATGCTGAAATTATTGGGCATTGATGTCAATACTGCGGCCAGTGATGAGGTTAAAGATACATCAACTTGGGTTAAATGGTTTGAAGAAGAGGTTTCTCGAGATCACAGTCAATGGATGCCTACTCGGAAAGCTGGTGAATTCTCCAGTGTTGAGGGAATGGGTGAGGGAGAAGATGAAGAGCAACTCTCAAGTGTTGTACTATATGAAGATATAAATGGATATCTATTTTCCTTACGTTCAAAGGAGGCCCGCTTATCTCTGGTATACCAGTTCATTGATTTCTTCGGTGCACATATCTCCCCATGGACTTCCAGCAACAGTTTGTCGTGGAGTGAGAAAATAAGTAGCCTTGAAACATTTTCAGATTCCATGTTAGAAAACTTGAGAAGTGTTCATGAATGTTTGTCGAAATCAGATAGTGCCAACTGTTTCAGCTTGGGATCTCTTCTAGGTGGCAGCTGTGACTTATCTATGCGGACTGAGATGATGAAGTTTCTCCGCAATGCCATCTTGCTTTGTCTAAATGTTTTCCCGCGAAATTACATTCTCGAAGAAGCTGTGCTTGTTGCAGAAGAACTATTTGTAACAAATATGAAAACATGTGAGGTAGCAACTATGCCATGCCAAGCTTTGGCCAAACGTCTCCTGAAAAGTGACCGGCAGGATCTACTACTTTGTGGAGTTTATGCACAGAGAGAAGCTGCTTCTGGAAATATGAAACATGCAAGGCGAGTCTTCGACATGGCACTGACTTCTATCTGTGGCCTCCCTAAGGAATTACAGTGTAACACTCCTTTGCTATGTTTATGGTATGCTGAATCGGAAGTAGCCAATAGTAGCGGCAGTGGTAGGGATACAGAATCATCATCTCGTGCTATGCATATTCTGTGCTACCTGGGAAGTGGTCTAGCTTATAGTCCTTATACTTCCCAGTCTTCAAGCATGCAAATTCTTAGAGCACGCCAGGGGTTCAGAGAGAAGCTTAAGAAGATACAATCAACATGGTCTCATGGTGTCACAGATGATCAATCAGCAGCGCTTGTTTGTTCGGCAGCTCTATTTGAGGAGTTAACAAATGACCTTCCTGGTGCTCTTGAGATCTTAGAGCACATGTTCAGTTCTGTTCTTCCAGGAAGAAAAAGTCAAAGTCATCAACTTGAACTCTTGTTCAATTATTATGTGAGAATGCTTCAGAGACACCAGGACGATCTAACTTTGTCACAACTTTGGAAGCCCATATCAGAGGGACTGCAACTGTATCCTCTCAATCCTGAACTTTATCGAGCTTTGGTGGACATTTGTAATCACCGGATGACATCCCATAAACTGAGAATGATGTTCGATGACTACTCCCGCAAGAATTCGTCTGTCGTTGTTTGGCTATTTGCACTTTCTTATGAATTGAGTAAAGGAGGCTCATCACACAGAATCCGCGGATTGTTTGAAAGGGCATTGGCACAAGATACACAAAACAACTCAGTTATTCTATGGCGTTGCTACATAGCATATGAGATCGACATCGCGGACAATCCATCAGCAGCTAGAAGGATTTATTTCCGAGCTATAAATGCATGCCCATGGTCGAAGAAACTATGGCTCGATGGGTTTGGGAAGCTGGGATCAGTCTTGACGGCAAAAGAGATGTCAGATTTACAAGAAGTGATGCGGGACAAGGAACTGAACATTAGGACAGATATCTACGAGATTCTGCTTATGCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NRDE-2

Protein Analysis

1149

Amino Acids

130.07

Weight (kDa)

5.01

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NRDE-2 PF08424 277 - 674 5.5e-77 NRDE-2, necessary for RNA interference
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17712 AT3G17712 AT3G17712 AT3G17740
fragaria_vesca FvH4_5g17940 FvH4_5g17940 FvH4_5g17940
malus_domestica MD14G1242200.v1.1
prunus_persica Prupe.5G239800_v2.0.a1
pyrus_communis pycom14g20360
rosa_chinensis RchiOBHm_Chr7g0177661
rosa_laevigata RLG00000005516
rosa_multiflora Rmu_sc0004449.1_g000002 Rmu_ssc0000236.1_g000002
rosa_roxburghii Rroxscaffold_3G00275680
rosa_rugosa Rorug06G0408300
rosa_samantha Rh7AG007800 Rh7BG007700 Rh7CG008200 Rh7DG007900
rosa_wichuraiana Rw7G000650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 267, 492
AarI CACCTGC 1 cut(s) 1231
Acc36I ACCTGC 2 cut(s) 1231, 1314
AccB7I CCANNNNNTGG 2 cut(s) 1354, 2356
AccI GTMKAC 2 cut(s) 973, 1989
AccII CGCG 3 cut(s) 2260, 3159, 3248
AclWI GGATC 6 cut(s) 147, 434, 1195, 2173, 2397, 3352
AcoI YGGCCR 3 cut(s) 1356, 1761, 2358
AcsI RAATTY 7 cut(s) 664, 1099, 1385, 1539, 1862, 2673, 3085
AcuI CTGAAG 3 cut(s) 1617, 1728, 2900
AfaI GTAC 2 cut(s) 1065, 1923
AfeI AGCGCT 1 cut(s) 2763
AfiI CCNNNNNNNGG 7 cut(s) 20, 73, 524, 627, 1354, 2356, 2497
AflII CTTAAG 1 cut(s) 2708
AflIII ACRYGT 2 cut(s) 2324, 2835
AjiI CACGTC 1 cut(s) 745
AjnI CCWGG 8 cut(s) 517, 1203, 1347, 2619, 2688, 2809, 2854, 2925
AjuI GAANNNNNNNTTGG 2 cut(s) 1476, 1508
Alw21I GWGCWC 6 cut(s) 34, 1449, 2017, 2686, 2818, 2835
Alw26I GTCTC 6 cut(s) 195, 1044, 1609, 2372, 2736, 2914
Alw44I GTGCAC 1 cut(s) 2013
AlwI GGATC 6 cut(s) 147, 434, 1195, 2173, 2397, 3352
AlwNI CAGNNNCTG 1 cut(s) 1354
Ama87I CYCGRG 1 cut(s) 1821
Aor51HI AGCGCT 1 cut(s) 2763
AoxI GGCC 5 cut(s) 1356, 1761, 1971, 2358, 2488
ApaLI GTGCAC 1 cut(s) 2013
ApoI RAATTY 7 cut(s) 664, 1099, 1385, 1539, 1862, 2673, 3085
ArsI GACNNNNNNTTYG 2 cut(s) 3353, 3385
Asp700I GAANNNNTTC 1 cut(s) 1293
AspLEI GCGC 1 cut(s) 2764
AspS9I GGNCC 1 cut(s) 1972
AsuHPI GGTGA 3 cut(s) 1871, 1898, 3023
AsuII TTCGAA 2 cut(s) 98, 401
AsuNHI GCTAGC 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 1821
AxyI CCTNAGG 1 cut(s) 2496
BaeGI GKGCMC 1 cut(s) 2017
BalI TGGCCA 2 cut(s) 1358, 2360
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
BauI CACGAG 1 cut(s) 2595
BbsI GAAGAC 6 cut(s) 24, 55, 747, 1695, 2452, 2652
Bbv12I GWGCWC 6 cut(s) 34, 1449, 2017, 2686, 2818, 2835
BccI CCATC 8 cut(s) 92, 224, 1286, 1411, 1491, 2240, 3265, 3320
BceAI ACGGC 3 cut(s) 37, 186, 3372
BciT130I CCWGG 8 cut(s) 519, 1205, 1349, 2621, 2690, 2811, 2856, 2927
BciVI GTATCC 3 cut(s) 1240, 2572, 2994
BclI TGATCA 1 cut(s) 2749
BcoDI GTCTC 6 cut(s) 195, 1044, 1609, 2372, 2736, 2914
BfaI CTAG 8 cut(s) 126, 258, 1298, 1310, 1470, 2174, 2633, 3267
BfmI CTRYAG 3 cut(s) 42, 947, 1321
BfoI RGCGCY 1 cut(s) 2765
BfrI CTTAAG 1 cut(s) 2708
BfuAI ACCTGC 2 cut(s) 1231, 1314
BfuI GTATCC 3 cut(s) 1240, 2572, 2994
BglII AGATCT 1 cut(s) 2823
Bme1390I CCNGG 8 cut(s) 519, 1205, 1349, 2621, 2690, 2811, 2856, 2927
BmeT110I CYCGRG 1 cut(s) 1821
BmgBI CACGTC 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 1972
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 8 cut(s) 519, 1205, 1349, 2621, 2690, 2811, 2856, 2927
BmrI ACTGGG 1 cut(s) 2650
BmsI GCATC 5 cut(s) 812, 862, 1401, 1830, 3378
BmtI GCTAGC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 2650
BoxI GACNNNNGTC 1 cut(s) 432
BpiI GAAGAC 6 cut(s) 24, 55, 747, 1695, 2452, 2652
BplI GAGNNNNNCTC 2 cut(s) 1895, 1927
BpmI CTGGAG 6 cut(s) 219, 755, 1141, 1532, 1665, 1852
Bpu14I TTCGAA 2 cut(s) 98, 401
BpuEI CTTGAG 5 cut(s) 998, 1016, 1897, 2128, 2840
BsaBI GATNNNNATC 2 cut(s) 1659, 3242
BsaI GGTCTC 2 cut(s) 1609, 2736
BsaJI CCNNGG 8 cut(s) 186, 518, 648, 2027, 2620, 2689, 3157, 3302
BsaWI WCCGGW 1 cut(s) 3033
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 7 cut(s) 20, 73, 524, 627, 1354, 2356, 2497
Bse118I RCCGGY 1 cut(s) 2382
Bse1I ACTGG 7 cut(s) 632, 738, 1648, 1764, 1869, 1993, 2656
Bse21I CCTNAGG 1 cut(s) 2496
Bse3DI GCAATG 1 cut(s) 2233
Bse8I GATNNNNATC 2 cut(s) 1659, 3242
BseBI CCWGG 8 cut(s) 519, 1205, 1349, 2621, 2690, 2811, 2856, 2927
BseDI CCNNGG 8 cut(s) 186, 518, 648, 2027, 2620, 2689, 3157, 3302
BseJI GATNNNNATC 2 cut(s) 1659, 3242
BseLI CCNNNNNNNGG 7 cut(s) 20, 73, 524, 627, 1354, 2356, 2497
BseMI GCAATG 1 cut(s) 2233
BseMII CTCAG 8 cut(s) 102, 521, 524, 944, 1620, 2196, 3044, 3216
BseNI ACTGG 7 cut(s) 632, 738, 1648, 1764, 1869, 1993, 2656
BseRI GAGGAG 5 cut(s) 96, 237, 1195, 1535, 2804
BseSI GKGCMC 1 cut(s) 2017
BseYI CCCAGC 1 cut(s) 3340
Bsh1236I CGCG 3 cut(s) 2260, 3159, 3248
BshFI GGCC 5 cut(s) 1358, 1763, 1973, 2360, 2490
BsiHKAI GWGCWC 6 cut(s) 34, 1449, 2017, 2686, 2818, 2835
BsiHKCI CYCGRG 1 cut(s) 1821
BsiSI CCGG 2 cut(s) 2383, 3034
BslFI GGGAC 3 cut(s) 849, 2985, 3407
BslI CCNNNNNNNGG 7 cut(s) 20, 73, 524, 627, 1354, 2356, 2497
BsmAI GTCTC 6 cut(s) 195, 1044, 1609, 2372, 2736, 2914
BsmBI CGTCTC 2 cut(s) 195, 2372
BsmFI GGGAC 3 cut(s) 849, 2985, 3407
BsmI GAATGC 2 cut(s) 106, 2916
BsnI GGCC 5 cut(s) 1358, 1763, 1973, 2360, 2490
Bso31I GGTCTC 2 cut(s) 1609, 2736
BsoBI CYCGRG 1 cut(s) 1821
Bsp119I TTCGAA 2 cut(s) 98, 401
Bsp1286I GDGCHC 6 cut(s) 34, 1449, 2017, 2686, 2818, 2835
Bsp19I CCATGG 3 cut(s) 648, 2027, 3302
BspANI GGCC 5 cut(s) 1358, 1763, 1973, 2360, 2490
BspCNI CTCAG 8 cut(s) 101, 520, 525, 943, 1619, 2197, 3045, 3215
BspFNI CGCG 3 cut(s) 2260, 3159, 3248
BspHI TCATGA 1 cut(s) 2119
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 2 cut(s) 951, 1325
BspMI ACCTGC 2 cut(s) 1231, 1314
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 6 cut(s) 147, 434, 1195, 2173, 2397, 3352
BspQI GCTCTTC 1 cut(s) 1896
BspT104I TTCGAA 2 cut(s) 98, 401
BspTI CTTAAG 1 cut(s) 2708
BspTNI GGTCTC 2 cut(s) 1609, 2736
BsrDI GCAATG 1 cut(s) 2233
BsrFI RCCGGY 1 cut(s) 2382
BsrI ACTGG 7 cut(s) 632, 738, 1648, 1764, 1869, 1993, 2656
BssAI RCCGGY 1 cut(s) 2382
BssECI CCNNGG 8 cut(s) 186, 518, 648, 2027, 2620, 2689, 3157, 3302
BssNAI GTATAC 2 cut(s) 974, 1990
BssSI CACGAG 1 cut(s) 2595
BssT1I CCWWGG 3 cut(s) 648, 2027, 3302
Bst1107I GTATAC 2 cut(s) 974, 1990
Bst2BI CACGAG 1 cut(s) 2595
Bst2UI CCWGG 8 cut(s) 519, 1205, 1349, 2621, 2690, 2811, 2856, 2927
Bst4CI ACNGT 8 cut(s) 751, 1017, 1440, 1832, 2045, 2153, 2508, 2982
Bst6I CTCTTC 4 cut(s) 341, 1806, 1896, 2175
BstAFI CTTAAG 1 cut(s) 2708
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBI TTCGAA 2 cut(s) 98, 401
BstDSI CCRYGG 4 cut(s) 648, 2027, 3157, 3302
BstEII GGTNACC 1 cut(s) 1343
BstENI CCTNNNNNAGG 1 cut(s) 2495
BstFNI CGCG 3 cut(s) 2260, 3159, 3248
BstH2I RGCGCY 1 cut(s) 2765
BstHHI GCGC 1 cut(s) 2764
BstMAI GTCTC 6 cut(s) 195, 1044, 1609, 2372, 2736, 2914
BstNI CCWGG 8 cut(s) 519, 1205, 1349, 2621, 2690, 2811, 2856, 2927
BstNSI RCATGY 6 cut(s) 644, 2328, 2450, 2671, 2839, 3300
BstPAI GACNNNNGTC 1 cut(s) 432
BstPI GGTNACC 1 cut(s) 1343
BstSCI CCNGG 8 cut(s) 517, 1203, 1347, 2619, 2688, 2809, 2854, 2925
BstSFI CTRYAG 3 cut(s) 42, 947, 1321
BstSLI GKGCMC 1 cut(s) 2017
BstUI CGCG 3 cut(s) 2260, 3159, 3248
BstV2I GAAGAC 6 cut(s) 24, 55, 747, 1695, 2452, 2652
BstX2I RGATCY 4 cut(s) 139, 2165, 2389, 2823
BstYI RGATCY 4 cut(s) 139, 2165, 2389, 2823
BstZ17I GTATAC 2 cut(s) 974, 1990
Bsu36I CCTNAGG 1 cut(s) 2496
BsuI GTATCC 3 cut(s) 1240, 2572, 2994
BsuRI GGCC 5 cut(s) 1358, 1763, 1973, 2360, 2490
BtgI CCRYGG 4 cut(s) 648, 2027, 3157, 3302
BtgZI GCGATG 1 cut(s) 3229
BtrI CACGTC 1 cut(s) 745
BtsI GCAGTG 1 cut(s) 2575
BtsIMutI CAGTG 7 cut(s) 731, 1641, 1771, 1876, 2471, 2513, 2575
BveI ACCTGC 2 cut(s) 1231, 1314
CaiI CAGNNNCTG 1 cut(s) 1354
CciI TCATGA 1 cut(s) 2119
CfoI GCGC 1 cut(s) 2764
Cfr10I RCCGGY 1 cut(s) 2382
Cfr13I GGNCC 1 cut(s) 1972
Cfr42I CCGCGG 1 cut(s) 3160
Csp6I GTAC 2 cut(s) 1064, 1922
CviQI GTAC 2 cut(s) 1064, 1922
EaeI YGGCCR 3 cut(s) 1356, 1761, 2358
Eam1104I CTCTTC 4 cut(s) 341, 1806, 1896, 2175
EarI CTCTTC 4 cut(s) 341, 1806, 1896, 2175
Eco130I CCWWGG 3 cut(s) 648, 2027, 3302
Eco31I GGTCTC 2 cut(s) 1609, 2736
Eco32I GATATC 2 cut(s) 1946, 3421
Eco47III AGCGCT 1 cut(s) 2763
Eco57I CTGAAG 3 cut(s) 1617, 1728, 2900
Eco81I CCTNAGG 1 cut(s) 2496
Eco88I CYCGRG 1 cut(s) 1821
Eco91I GGTNACC 1 cut(s) 1343
EcoNI CCTNNNNNAGG 1 cut(s) 2495
EcoO65I GGTNACC 1 cut(s) 1343
EcoRI GAATTC 3 cut(s) 1099, 1862, 3085
EcoRII CCWGG 8 cut(s) 517, 1203, 1347, 2619, 2688, 2809, 2854, 2925
EcoRV GATATC 2 cut(s) 1946, 3421
EcoT14I CCWWGG 3 cut(s) 648, 2027, 3302
EcoT22I ATGCAT 2 cut(s) 2607, 3298
ErhI CCWWGG 3 cut(s) 648, 2027, 3302
Esp3I CGTCTC 2 cut(s) 195, 2372
FalI AAGNNNNNCTT 2 cut(s) 2271, 2303
FaqI GGGAC 3 cut(s) 849, 2985, 3407
FauI CCCGC 4 cut(s) 1982, 2265, 3086, 3384
FauNDI CATATG 1 cut(s) 3232
FbaI TGATCA 1 cut(s) 2749
FblI GTMKAC 2 cut(s) 973, 1989
FspBI CTAG 8 cut(s) 126, 258, 1298, 1310, 1470, 2174, 2633, 3267
GlaI GCGC 1 cut(s) 2763
GsaI CCCAGC 1 cut(s) 3344
GsuI CTGGAG 6 cut(s) 219, 755, 1141, 1532, 1665, 1852
HaeII RGCGCY 1 cut(s) 2765
HaeIII GGCC 5 cut(s) 1358, 1763, 1973, 2360, 2490
HapII CCGG 2 cut(s) 2383, 3034
HhaI GCGC 1 cut(s) 2764
Hin6I GCGC 1 cut(s) 2762
HinP1I GCGC 1 cut(s) 2762
HincII GTYRAC 1 cut(s) 2796
HindII GTYRAC 1 cut(s) 2796
HindIII AAGCTT 2 cut(s) 2352, 2705
HpaI GTTAAC 1 cut(s) 2796
HpaII CCGG 2 cut(s) 2383, 3034
HphI GGTGA 3 cut(s) 1871, 1898, 3023
Hpy166II GTNNAC 5 cut(s) 974, 1990, 2015, 2796, 3019
Hpy8I GTNNAC 5 cut(s) 974, 1990, 2015, 2796, 3019
Hpy99I CGWCG 4 cut(s) 29, 172, 209, 558
HpyAV CCTTC 9 cut(s) 186, 212, 278, 406, 976, 1478, 1660, 2816, 3264
HpyCH4III ACNGT 8 cut(s) 751, 1017, 1440, 1832, 2045, 2153, 2508, 2982
HpyCH4IV ACGT 5 cut(s) 556, 744, 862, 1960, 2365
HpySE526I ACGT 5 cut(s) 556, 744, 862, 1960, 2365
HspAI GCGC 1 cut(s) 2762
Ksp22I TGATCA 1 cut(s) 2749
KspAI GTTAAC 1 cut(s) 2796
KspI CCGCGG 1 cut(s) 3160
LguI GCTCTTC 1 cut(s) 1896
LmnI GCTCC 8 cut(s) 29, 109, 178, 224, 800, 1351, 1455, 1487
LweI GCATC 5 cut(s) 812, 862, 1401, 1830, 3378
MaeI CTAG 8 cut(s) 126, 258, 1298, 1310, 1470, 2174, 2633, 3267
MaeII ACGT 5 cut(s) 556, 744, 862, 1960, 2365
MflI RGATCY 4 cut(s) 139, 2165, 2389, 2823
MhlI GDGCHC 6 cut(s) 34, 1449, 2017, 2686, 2818, 2835
MlsI TGGCCA 2 cut(s) 1358, 2360
MluNI TGGCCA 2 cut(s) 1358, 2360
MlyI GAGTC 3 cut(s) 305, 782, 2466
MmeI TCCRAC 4 cut(s) 1306, 1456, 1562, 1571
Mox20I TGGCCA 2 cut(s) 1358, 2360
Mph1103I ATGCAT 2 cut(s) 2607, 3298
MroXI GAANNNNTTC 1 cut(s) 1293
MscI TGGCCA 2 cut(s) 1358, 2360
MseI TTAA 4 cut(s) 1776, 1797, 2709, 2795
MslI CAYNNNNRTG 1 cut(s) 3301
Msp20I TGGCCA 2 cut(s) 1358, 2360
MspA1I CMGCKG 2 cut(s) 2184, 3159
MspCI CTTAAG 1 cut(s) 2708
MspI CCGG 2 cut(s) 2383, 3034
MspR9I CCNGG 8 cut(s) 519, 1205, 1349, 2621, 2690, 2811, 2856, 2927
Mva1269I GAATGC 2 cut(s) 106, 2916
MvaI CCWGG 8 cut(s) 519, 1205, 1349, 2621, 2690, 2811, 2856, 2927
MvnI CGCG 3 cut(s) 2260, 3159, 3248
NcoI CCATGG 3 cut(s) 648, 2027, 3302
NdeI CATATG 1 cut(s) 3232
NheI GCTAGC 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 7 cut(s) 745, 761, 850, 2186, 2378, 2740, 2943
NsiI ATGCAT 2 cut(s) 2607, 3298
NspI RCATGY 6 cut(s) 644, 2328, 2450, 2671, 2839, 3300
NspV TTCGAA 2 cut(s) 98, 401
PaeI GCATGC 2 cut(s) 2671, 3300
PaeR7I CTCGAG 1 cut(s) 1821
PagI TCATGA 1 cut(s) 2119
PaqCI CACCTGC 1 cut(s) 1231
PciI ACATGT 2 cut(s) 2324, 2835
PciSI GCTCTTC 1 cut(s) 1896
PcsI WCGNNNNNNNCGW 1 cut(s) 1299
PctI GAATGC 2 cut(s) 106, 2916
PdmI GAANNNNTTC 1 cut(s) 1293
PflMI CCANNNNNTGG 2 cut(s) 1354, 2356
PfoI TCCNGGA 1 cut(s) 2854
PleI GAGTC 3 cut(s) 304, 782, 2465
PpsI GAGTC 3 cut(s) 304, 782, 2465
PscI ACATGT 2 cut(s) 2324, 2835
PshAI GACNNNNGTC 1 cut(s) 432
PsiI TTATAA 2 cut(s) 267, 492
Psp6I CCWGG 8 cut(s) 517, 1203, 1347, 2619, 2688, 2809, 2854, 2925
PspEI GGTNACC 1 cut(s) 1343
PspFI CCCAGC 1 cut(s) 3340
PspGI CCWGG 8 cut(s) 517, 1203, 1347, 2619, 2688, 2809, 2854, 2925
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 1972
PstI CTGCAG 2 cut(s) 951, 1325
PstNI CAGNNNCTG 1 cut(s) 1354
PsuI RGATCY 4 cut(s) 139, 2165, 2389, 2823
PvuII CAGCTG 1 cut(s) 2184
RsaI GTAC 2 cut(s) 1065, 1923
RsaNI GTAC 2 cut(s) 1064, 1922
RseI CAYNNNNRTG 1 cut(s) 3301
SacII CCGCGG 1 cut(s) 3160
SapI GCTCTTC 1 cut(s) 1896
SaqAI TTAA 4 cut(s) 1776, 1797, 2709, 2795
Sau96I GGNCC 1 cut(s) 1972
SchI GAGTC 3 cut(s) 305, 782, 2466
ScrFI CCNGG 8 cut(s) 519, 1205, 1349, 2621, 2690, 2811, 2856, 2927
SduI GDGCHC 6 cut(s) 34, 1449, 2017, 2686, 2818, 2835
SfaNI GCATC 5 cut(s) 812, 862, 1401, 1830, 3378
SfcI CTRYAG 3 cut(s) 42, 947, 1321
Sfr274I CTCGAG 1 cut(s) 1821
Sfr303I CCGCGG 1 cut(s) 3160
SfuI TTCGAA 2 cut(s) 98, 401
SgrBI CCGCGG 1 cut(s) 3160
SlaI CTCGAG 1 cut(s) 1821
SmiMI CAYNNNNRTG 1 cut(s) 3301
SmlI CTYRAG 7 cut(s) 977, 1031, 1821, 1912, 2107, 2708, 2819
SmoI CTYRAG 7 cut(s) 977, 1031, 1821, 1912, 2107, 2708, 2819
SphI GCATGC 2 cut(s) 2671, 3300
SspMI CTAG 8 cut(s) 126, 258, 1298, 1310, 1470, 2174, 2633, 3267
StyD4I CCNGG 8 cut(s) 517, 1203, 1347, 2619, 2688, 2809, 2854, 2925
StyI CCWWGG 3 cut(s) 648, 2027, 3302
TaaI ACNGT 8 cut(s) 751, 1017, 1440, 1832, 2045, 2153, 2508, 2982
TaiI ACGT 5 cut(s) 559, 747, 865, 1963, 2368
TatI WGTACW 2 cut(s) 1063, 1921
TauI GCSGC 4 cut(s) 51, 164, 1763, 2568
Tru1I TTAA 4 cut(s) 1776, 1797, 2709, 2795
Tru9I TTAA 4 cut(s) 1776, 1797, 2709, 2795
TscAI CASTG 7 cut(s) 738, 1648, 1771, 1876, 2478, 2513, 2575
TseFI GTSAC 7 cut(s) 745, 761, 850, 2186, 2378, 2740, 2943
Tsp45I GTSAC 7 cut(s) 745, 761, 850, 2186, 2378, 2740, 2943
TspGWI ACGGA 3 cut(s) 42, 152, 358
TspRI CASTG 7 cut(s) 738, 1648, 1771, 1876, 2478, 2513, 2575
Van91I CCANNNNNTGG 2 cut(s) 1354, 2356
Vha464I CTTAAG 1 cut(s) 2708
VneI GTGCAC 1 cut(s) 2013
XagI CCTNNNNNAGG 1 cut(s) 2495
XapI RAATTY 7 cut(s) 664, 1099, 1385, 1539, 1862, 2673, 3085
XceI RCATGY 6 cut(s) 644, 2328, 2450, 2671, 2839, 3300
XhoI CTCGAG 1 cut(s) 1821
XmiI GTMKAC 2 cut(s) 973, 1989
XmnI GAANNNNTTC 1 cut(s) 1293
XspI CTAG 8 cut(s) 126, 258, 1298, 1310, 1470, 2174, 2633, 3267
Zsp2I ATGCAT 2 cut(s) 2607, 3298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.