AT3G17940

Converts alpha-aldose to the beta-anomer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011418
Physical Location & Seq
Reverse (-)
6143414 .. 6145374
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17940.1

Sequence Viewer

Length: 1026 bp
ATGGCGGATCAGAGCAAAAACACTCCAGAGATCTTCGAGCTCAACAATGGCACCATGCAGGTCAAGATCTCAAACTACGGCACCACCATCACCTCTTTGTCTGTTCCCGACAAGAACGGGAAACTGGGGGATGTAGTTCTCGGATTCGACTCGGTGGATCCATATGTGAAAGGGCTTGCACCATACTTTGGGTGCATTGTTGGTCGTGTGGCAAATCGGATCAAGGAGGGAAAATTCAGTCTCAATGGAGTTAACTACACTTTGCCTATCAACAAGCCTCCTAATAGTCTCCACGGTGGTAACAAGGGTTTCGATAAGAAGATATGGGAAGTTGCAGGGCACAAGAGAGACGGCGAAAAACCTTTCATCACTTTCAAATATCACAGTGCCGATGGAGAAGAAGGTTACCCTGGTGCGGTTTCTGTCACGGCGACATACACTCTCACGTCAGCCACGACAATGAGACTTGACATGGAAGCTGTTCCAGAGAACAAAGATACTCCCATCAACTTAGCTCAACATACATACTGGAACTTAGCAGGTCATGACTCAGGAAACATTCTAGACCATAAGATTCAGATATGGGGGTCTCATATCACGCCGGTTGACGAATACACAGTTCCTACAGGAGAGATCTTGCCTGTAAAGGGAACTCCTTTCGATTTCACTGAGGAGAAGCGGATAGGCGAGTCTATTGGAGAGGTTGGTATCGGATACGATCATAACTACGTGTTGGACTGTCCTGATCAAGAGAAGGAGGGGCTGAAACACGCAGCGAAGCTCAGTGATGCTGCTAGCTCAAGGGTACTGAACTTGTGGACCAATGTGCCGGGAATGCAGTTTTATACCGGGAACTATGTGAATGGAGTGGTTGGGAAAGGGAATGCGGTTTACGGGAAACATGCGGGTGTGTGCCTTGAGACGCAGGGATTCCCGAACGCGATTAACCAGTCGAATTTCCCGTCTGTTGTGGTTAAGGCTGGTGAGAAGTACAATCACACGATGCTGTTTGAGTTTTCAGCTTGA

Protein Analysis

341

Amino Acids

37.2

Weight (kDa)

5.88

Isoelectric Point (pI)

23.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 12 - 337 2.2e-97 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17940
fragaria_vesca FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica Prupe.5G234200_v2.0.a1
pyrus_communis pycom06g20410 pycom14g19790
rosa_chinensis RchiOBHm_Chr7g0178251
rosa_laevigata RLG00000005459
rosa_multiflora Rmu_co8199974.1_g000001
rosa_roxburghii Rroxscaffold_3G00275040
rosa_rugosa Rorug06G0415500 Rorug06G0415600
rosa_samantha Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana Rw7G001140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 49, 530
AccB1I GGYRCC 2 cut(s) 50, 80
AccB7I CCANNNNNTGG 1 cut(s) 188
AccII CGCG 1 cut(s) 941
AciI CCGC 5 cut(s) 5, 416, 679, 887, 905
AclWI GGATC 4 cut(s) 15, 152, 165, 227
AcsI RAATTY 2 cut(s) 233, 955
AfaI GTAC 2 cut(s) 807, 992
AfiI CCNNNNNNNGG 3 cut(s) 188, 415, 647
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 1 cut(s) 376
AjiI CACGTC 1 cut(s) 447
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 6 cut(s) 40, 479, 515, 781, 798, 1022
AluI AGCT 6 cut(s) 40, 479, 515, 781, 798, 1022
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 6 cut(s) 245, 293, 342, 457, 594, 914
AlwI GGATC 4 cut(s) 15, 152, 165, 227
ApeKI GCWGC 2 cut(s) 773, 791
ApoI RAATTY 2 cut(s) 233, 955
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
Asp700I GAANNNNTTC 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 819
AsuC2I CCSGG 2 cut(s) 831, 850
AsuHPI GGTGA 2 cut(s) 82, 995
AsuNHI GCTAGC 1 cut(s) 794
AvaII GGWCC 1 cut(s) 819
BaeGI GKGCMC 1 cut(s) 342
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 2 cut(s) 50, 80
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 778, 785
BccI CCATC 3 cut(s) 95, 386, 512
BceAI ACGGC 3 cut(s) 94, 367, 444
BciT130I CCWGG 1 cut(s) 411
BciVI GTATCC 1 cut(s) 707
BclI TGATCA 1 cut(s) 745
BcnI CCSGG 2 cut(s) 831, 850
BcoDI GTCTC 6 cut(s) 245, 293, 342, 457, 594, 914
BfaI CTAG 2 cut(s) 563, 795
BfmI CTRYAG 1 cut(s) 624
BfuAI ACCTGC 2 cut(s) 49, 530
BfuI GTATCC 1 cut(s) 707
BglII AGATCT 3 cut(s) 30, 66, 633
BisI GCNGC 2 cut(s) 774, 792
BlsI GCNGC 2 cut(s) 775, 793
Bme1390I CCNGG 3 cut(s) 411, 831, 850
Bme18I GGWCC 1 cut(s) 819
BmgBI CACGTC 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 819
BmiI GGNNCC 3 cut(s) 52, 82, 159
BmrFI CCNGG 3 cut(s) 411, 831, 850
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 778, 993
BmtI GCTAGC 1 cut(s) 798
BmuI ACTGGG 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 784, 938
BpuMI CCSGG 2 cut(s) 831, 850
BsaAI YACGTR 1 cut(s) 730
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 2 cut(s) 292, 409
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 415, 647
Bse118I RCCGGY 1 cut(s) 601
Bse1I ACTGG 3 cut(s) 129, 533, 949
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 292, 409
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 3 cut(s) 188, 415, 647
BseMII CTCAG 3 cut(s) 564, 660, 796
BseNI ACTGG 3 cut(s) 129, 533, 949
BseRI GAGGAG 1 cut(s) 686
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 2 cut(s) 778, 785
Bsh1236I CGCG 1 cut(s) 941
BshNI GGYRCC 2 cut(s) 50, 80
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 3 cut(s) 602, 830, 849
BslI CCNNNNNNNGG 3 cut(s) 188, 415, 647
BsmAI GTCTC 6 cut(s) 245, 293, 342, 457, 594, 914
BsmBI CGTCTC 2 cut(s) 342, 914
BsmI GAATGC 2 cut(s) 840, 889
Bso31I GGTCTC 1 cut(s) 594
Bsp1286I GDGCHC 2 cut(s) 42, 342
Bsp143I GATC 8 cut(s) 7, 30, 66, 157, 219, 633, 718, 745
BspACI CCGC 5 cut(s) 5, 416, 679, 887, 905
BspCNI CTCAG 3 cut(s) 563, 661, 795
BspFNI CGCG 1 cut(s) 941
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 3 cut(s) 52, 82, 159
BspMI ACCTGC 2 cut(s) 49, 530
BspOI GCTAGC 1 cut(s) 798
BspPI GGATC 4 cut(s) 15, 152, 165, 227
BspT107I GGYRCC 2 cut(s) 50, 80
BspTNI GGTCTC 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 601
BsrI ACTGG 3 cut(s) 129, 533, 949
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 2 cut(s) 292, 409
BssMI GATC 8 cut(s) 7, 30, 66, 157, 219, 633, 718, 745
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 4 cut(s) 296, 386, 619, 740
BstBAI YACGTR 1 cut(s) 730
BstC8I GCNNGC 2 cut(s) 177, 796
BstDEI CTNAG 5 cut(s) 511, 535, 550, 669, 782
BstDSI CCRYGG 1 cut(s) 292
BstEII GGTNACC 1 cut(s) 404
BstF5I GGATG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 941
BstKTI GATC 8 cut(s) 10, 33, 69, 160, 222, 636, 721, 748
BstMAI GTCTC 6 cut(s) 245, 293, 342, 457, 594, 914
BstMBI GATC 8 cut(s) 7, 30, 66, 157, 219, 633, 718, 745
BstMWI GCNNNNNNNGC 1 cut(s) 835
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 905
BstPI GGTNACC 1 cut(s) 404
BstSCI CCNGG 3 cut(s) 409, 829, 848
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 1 cut(s) 941
BstV1I GCAGC 2 cut(s) 778, 785
BstX2I RGATCY 4 cut(s) 30, 66, 157, 633
BstYI RGATCY 4 cut(s) 30, 66, 157, 633
BsuI GTATCC 1 cut(s) 707
BtgI CCRYGG 1 cut(s) 292
BtrI CACGTC 1 cut(s) 447
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 3 cut(s) 391, 666, 790
BveI ACCTGC 2 cut(s) 49, 530
Cac8I GCNNGC 2 cut(s) 177, 796
CciI TCATGA 1 cut(s) 544
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 819
CseI GACGC 1 cut(s) 931
Csp6I GTAC 2 cut(s) 806, 991
CviAII CATG 4 cut(s) 55, 472, 545, 902
CviQI GTAC 2 cut(s) 806, 991
DdeI CTNAG 5 cut(s) 511, 535, 550, 669, 782
DpnI GATC 8 cut(s) 9, 32, 68, 159, 221, 635, 720, 747
DpnII GATC 8 cut(s) 7, 30, 66, 157, 219, 633, 718, 745
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 819
Eco53kI GAGCTC 1 cut(s) 40
Eco91I GGTNACC 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 42
Esp3I CGTCTC 2 cut(s) 342, 914
FaeI CATG 4 cut(s) 58, 475, 548, 905
FatI CATG 4 cut(s) 54, 471, 544, 901
FauI CCCGC 1 cut(s) 898
FauNDI CATATG 1 cut(s) 163
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 2 cut(s) 774, 792
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 774, 792
FspBI CTAG 2 cut(s) 563, 795
GluI GCNGC 2 cut(s) 774, 792
GsuI CTGGAG 1 cut(s) 9
HapII CCGG 3 cut(s) 602, 830, 849
HgaI GACGC 1 cut(s) 931
Hin1II CATG 4 cut(s) 58, 475, 548, 905
HincII GTYRAC 2 cut(s) 253, 607
HindII GTYRAC 2 cut(s) 253, 607
HinfI GANTC 6 cut(s) 144, 149, 548, 574, 689, 930
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 3 cut(s) 602, 830, 849
HphI GGTGA 2 cut(s) 82, 995
Hpy166II GTNNAC 4 cut(s) 253, 607, 819, 892
Hpy188I TCNGA 5 cut(s) 12, 143, 219, 579, 713
Hpy8I GTNNAC 4 cut(s) 253, 607, 819, 892
HpyAV CCTTC 2 cut(s) 395, 748
HpyCH4III ACNGT 4 cut(s) 296, 386, 619, 740
HpyCH4IV ACGT 2 cut(s) 446, 729
HpyCH4V TGCA 5 cut(s) 58, 179, 195, 335, 838
HpyF10VI GCNNNNNNNGC 1 cut(s) 835
HpyF3I CTNAG 5 cut(s) 511, 535, 550, 669, 782
HpySE526I ACGT 2 cut(s) 446, 729
Hsp92II CATG 4 cut(s) 58, 475, 548, 905
Ksp22I TGATCA 1 cut(s) 745
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 8 cut(s) 7, 30, 66, 157, 219, 633, 718, 745
Lsp1109I GCAGC 2 cut(s) 778, 785
LweI GCATC 2 cut(s) 778, 993
MaeI CTAG 2 cut(s) 563, 795
MaeII ACGT 2 cut(s) 446, 729
MaeIII GTNAC 3 cut(s) 299, 404, 424
MalI GATC 8 cut(s) 9, 32, 68, 159, 221, 635, 720, 747
MboI GATC 8 cut(s) 7, 30, 66, 157, 219, 633, 718, 745
MboII GAAGA 3 cut(s) 25, 331, 410
MflI RGATCY 4 cut(s) 30, 66, 157, 633
MhlI GDGCHC 2 cut(s) 42, 342
MluCI AATT 2 cut(s) 233, 955
MlyI GAGTC 3 cut(s) 143, 542, 698
MmeI TCCRAC 1 cut(s) 714
MnlI CCTC 6 cut(s) 103, 220, 288, 664, 694, 751
MroXI GAANNNNTTC 1 cut(s) 480
MseI TTAA 3 cut(s) 252, 945, 975
MslI CAYNNNNRTG 2 cut(s) 458, 906
MspI CCGG 3 cut(s) 602, 830, 849
MspR9I CCNGG 3 cut(s) 411, 831, 850
Mva1269I GAATGC 2 cut(s) 840, 889
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 1 cut(s) 941
MwoI GCNNNNNNNGC 1 cut(s) 835
NciI CCSGG 2 cut(s) 831, 850
NdeI CATATG 1 cut(s) 163
NdeII GATC 8 cut(s) 7, 30, 66, 157, 219, 633, 718, 745
NheI GCTAGC 1 cut(s) 794
NlaIII CATG 4 cut(s) 58, 475, 548, 905
NlaIV GGNNCC 3 cut(s) 52, 82, 159
NmuCI GTSAC 1 cut(s) 424
NspI RCATGY 1 cut(s) 905
PagI TCATGA 1 cut(s) 544
PcsI WCGNNNNNNNCGW 2 cut(s) 452, 959
PctI GAATGC 2 cut(s) 840, 889
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 3 cut(s) 144, 574, 930
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 2 cut(s) 775, 793
PleI GAGTC 3 cut(s) 143, 542, 697
PpsI GAGTC 3 cut(s) 143, 542, 697
Ppu21I YACGTR 1 cut(s) 730
Psp124BI GAGCTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 409
PspEI GGTNACC 1 cut(s) 404
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 3 cut(s) 52, 82, 159
PspPI GGNCC 1 cut(s) 819
PsuI RGATCY 4 cut(s) 30, 66, 157, 633
RsaI GTAC 2 cut(s) 807, 992
RsaNI GTAC 2 cut(s) 806, 991
RseI CAYNNNNRTG 2 cut(s) 458, 906
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 3 cut(s) 252, 945, 975
SatI GCNGC 2 cut(s) 774, 792
Sau3AI GATC 8 cut(s) 7, 30, 66, 157, 219, 633, 718, 745
Sau96I GGNCC 1 cut(s) 819
SchI GAGTC 3 cut(s) 143, 542, 698
ScrFI CCNGG 3 cut(s) 411, 831, 850
SduI GDGCHC 2 cut(s) 42, 342
SfaNI GCATC 2 cut(s) 778, 993
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 1 cut(s) 819
SmiMI CAYNNNNRTG 2 cut(s) 458, 906
SmlI CTYRAG 2 cut(s) 799, 917
SmoI CTYRAG 2 cut(s) 799, 917
Sse9I AATT 2 cut(s) 233, 955
SsiI CCGC 5 cut(s) 5, 416, 679, 887, 905
SspMI CTAG 2 cut(s) 563, 795
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 3 cut(s) 409, 829, 848
TaaI ACNGT 4 cut(s) 296, 386, 619, 740
TaiI ACGT 2 cut(s) 449, 732
TaqI TCGA 5 cut(s) 36, 147, 312, 660, 953
TasI AATT 2 cut(s) 233, 955
TatI WGTACW 1 cut(s) 990
TfiI GAWTC 3 cut(s) 144, 574, 930
Tru1I TTAA 3 cut(s) 252, 945, 975
Tru9I TTAA 3 cut(s) 252, 945, 975
TscAI CASTG 3 cut(s) 391, 673, 790
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 2 cut(s) 773, 791
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 355
TspRI CASTG 3 cut(s) 391, 673, 790
Van91I CCANNNNNTGG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 819
XapI RAATTY 2 cut(s) 233, 955
XbaI TCTAGA 1 cut(s) 562
XceI RCATGY 1 cut(s) 905
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 2 cut(s) 563, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.