Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011418

Physical Location & Seq

Genomic Coordinates Reverse (-)

17776478 .. 17778344

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G234200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAGATCAGAACCAGAAAGCAGAAATCTTTGAGCTGAACAATGGGACCATGCGTGTCTTCATCACTAACTATGGCTGCACCATCACCTCCTTATCTGTTCCTGGAAAAGATGGAAAATTGGCTGATGTTGTTCTTGGATTCGACTCAGTTGACCCGTATATGCAAGGGCTTGCTCCTTATTTTGGCTGCATTGTGGGTCGGGTCGCAAATAGAATCAAAGATGGAAAATTTACACTCAACGGAACTGACTACTCTTTGCCTGTCAACAGACCTCCAAACAGTCTCCATGGTGGTCACAAGGGGTATGATAAGCAGATATGGGAGGTAGCAGAACATAAAAAAGGCGATAATGGATCCATCACTTTTAAGTATCATAGTCGTGATGGGGAGGAAGGTTACCCAGGTAATCTTTCTTTGACTGCAACTTATACGCTTACTTCAACCACATCAATGAGACTTGACATGGAAGCAGTACCTGAGAACAAGCCCACCCCAGTCAGTTTAGCTCAGCACACCTACTGGAACTTAGCTGGCCATAACTCGGGGAGCATACTCGACCATGCAATTCAAATCTGGGCAAACCATGTTACCCCTGTGGATGAAAACACAGTCCCAACAGGTGAAATCGAGCCAGTTAAAGGCACACCCTTTGATTTCACTGCTCAGAAGAGGATCGGTGAGTCCATCCATGAGGTCGGTATAGGGTATGACCACAACTATGTGCTGGACTGTGGGGAAGAGAAAGAAGGCCTGAAACATGCTGCAAGAGTGAGGGACCCATCCAGCTCAAGGGTCCTTAACCTATGGAGCAATGCCCCCGGGATGCAGTTTTACACTGCAAATTATGTCAATGGGGTTGTTGGCAAAGGAGGCGCTGTCTATGGAAAGCATGCCGGGCTCTGTTTGGAGACACAGGGGTTCCCAAATGCAATAAACACACCAAACTTCCCGTCCATTGTGGTTCAACCTGGTGAGAAGTACAGACACAGCATGTTGTTTGAGTTTTCAGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

340

Amino Acids

37.16

Weight (kDa)

5.9

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17940
fragaria_vesca	FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica	MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica	Prupe.5G234200_v2.0.a1
pyrus_communis	pycom06g20410 pycom14g19790
rosa_chinensis	RchiOBHm_Chr7g0178251
rosa_laevigata	RLG00000005459
rosa_multiflora	Rmu_co8199974.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275040
rosa_rugosa	Rorug06G0415500 Rorug06G0415600
rosa_samantha	Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana	Rw7G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	351, 364, 683
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	2 cut(s)	477, 983
AfiI	CCNNNNNNNGG	4 cut(s)	185, 544, 641, 792
AgsI	TTSAA	4 cut(s)	444, 572, 968, 1016
AjnI	CCWGG	3 cut(s)	103, 403, 970
AluBI	AGCT	4 cut(s)	37, 509, 533, 789
AluI	AGCT	4 cut(s)	37, 509, 533, 789
Alw26I	GTCTC	3 cut(s)	290, 451, 905
AlwI	GGATC	3 cut(s)	351, 364, 683
AlwNI	CAGNNNCTG	1 cut(s)	479
Ama87I	CYCGRG	2 cut(s)	544, 821
AoxI	GGCC	2 cut(s)	535, 751
ApeKI	GCWGC	3 cut(s)	78, 189, 764
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
AspLEI	GCGC	1 cut(s)	878
AspS9I	GGNCC	3 cut(s)	48, 778, 796
AsuC2I	CCSGG	3 cut(s)	822, 823, 898
AsuHPI	GGTGA	4 cut(s)	79, 635, 692, 986
AvaI	CYCGRG	2 cut(s)	544, 821
AvaII	GGWCC	3 cut(s)	48, 778, 796
BalI	TGGCCA	1 cut(s)	537
BamHI	GGATCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	903
BbsI	GAAGAC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	65, 176, 751
BccI	CCATC	7 cut(s)	92, 107, 218, 368, 380, 695, 790
BciT130I	CCWGG	3 cut(s)	105, 405, 972
BcnI	CCSGG	3 cut(s)	822, 823, 898
BcoDI	GTCTC	3 cut(s)	290, 451, 905
BfoI	RGCGCY	1 cut(s)	879
BisI	GCNGC	3 cut(s)	79, 190, 765
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	3 cut(s)	80, 191, 766
Bme1390I	CCNGG	6 cut(s)	105, 405, 822, 823, 898, 972
Bme18I	GGWCC	3 cut(s)	48, 778, 796
BmeT110I	CYCGRG	2 cut(s)	544, 821
BmgT120I	GGNCC	3 cut(s)	48, 778, 796
BmiI	GGNNCC	6 cut(s)	49, 358, 779, 780, 797, 923
BmrFI	CCNGG	6 cut(s)	105, 405, 822, 823, 898, 972
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	816
BmuI	ACTGGG	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	775
BpuMI	CCSGG	3 cut(s)	822, 823, 898
BsaJI	CCNNGG	4 cut(s)	289, 403, 820, 821
BsaXI	ACNNNNNCTCC	2 cut(s)	864, 894
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 544, 641, 792
Bse1I	ACTGG	3 cut(s)	497, 527, 635
Bse3DI	GCAATG	1 cut(s)	820
BseBI	CCWGG	3 cut(s)	105, 405, 972
BseDI	CCNNGG	4 cut(s)	289, 403, 820, 821
BseGI	GGATG	4 cut(s)	607, 687, 782, 831
BseLI	CCNNNNNNNGG	4 cut(s)	185, 544, 641, 792
BseMI	GCAATG	1 cut(s)	820
BseMII	CTCAG	4 cut(s)	162, 471, 524, 680
BseNI	ACTGG	3 cut(s)	497, 527, 635
BseXI	GCAGC	3 cut(s)	65, 176, 751
BsgI	GTGCAG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	537, 753
BsiHKCI	CYCGRG	2 cut(s)	544, 821
BsiSI	CCGG	2 cut(s)	822, 897
BslFI	GGGAC	3 cut(s)	61, 599, 791
BslI	CCNNNNNNNGG	4 cut(s)	185, 544, 641, 792
BsmAI	GTCTC	3 cut(s)	290, 451, 905
BsmFI	GGGAC	3 cut(s)	61, 599, 791
BsnI	GGCC	2 cut(s)	537, 753
BsoBI	CYCGRG	2 cut(s)	544, 821
Bsp1286I	GDGCHC	1 cut(s)	903
Bsp143I	GATC	3 cut(s)	7, 356, 675
Bsp1720I	GCTNAGC	1 cut(s)	510
Bsp19I	CCATGG	1 cut(s)	289
BspANI	GGCC	2 cut(s)	537, 753
BspCNI	CTCAG	4 cut(s)	161, 472, 523, 679
BspLI	GGNNCC	6 cut(s)	49, 358, 779, 780, 797, 923
BspPI	GGATC	3 cut(s)	351, 364, 683
BsrDI	GCAATG	1 cut(s)	820
BsrI	ACTGG	3 cut(s)	497, 527, 635
BssECI	CCNNGG	4 cut(s)	289, 403, 820, 821
BssMI	GATC	3 cut(s)	7, 356, 675
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	3 cut(s)	105, 405, 972
Bst4CI	ACNGT	3 cut(s)	284, 613, 734
Bst6I	CTCTTC	2 cut(s)	665, 735
BstC8I	GCNNGC	3 cut(s)	174, 535, 894
BstDEI	CTNAG	5 cut(s)	148, 480, 510, 529, 666
BstDSI	CCRYGG	1 cut(s)	289
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	4 cut(s)	607, 687, 782, 831
BstH2I	RGCGCY	1 cut(s)	879
BstHHI	GCGC	1 cut(s)	878
BstKTI	GATC	3 cut(s)	10, 359, 678
BstMAI	GTCTC	3 cut(s)	290, 451, 905
BstMBI	GATC	3 cut(s)	7, 356, 675
BstMWI	GCNNNNNNNGC	2 cut(s)	873, 898
BstNI	CCWGG	3 cut(s)	105, 405, 972
BstNSI	RCATGY	3 cut(s)	764, 896, 997
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	6 cut(s)	103, 403, 820, 821, 896, 970
BstV1I	GCAGC	3 cut(s)	65, 176, 751
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	537, 753
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	4 cut(s)	607, 687, 782, 831
BtsI	GCAGTG	2 cut(s)	660, 837
BtsIMutI	CAGTG	2 cut(s)	660, 837
Cac8I	GCNNGC	3 cut(s)	174, 535, 894
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	1 cut(s)	878
Cfr13I	GGNCC	3 cut(s)	48, 778, 796
Cfr9I	CCCGGG	1 cut(s)	821
CsiI	ACCWGGT	1 cut(s)	970
Csp6I	GTAC	2 cut(s)	476, 982
CviAII	CATG	9 cut(s)	52, 290, 466, 563, 587, 692, 761, 893, 994
CviQI	GTAC	2 cut(s)	476, 982
DdeI	CTNAG	5 cut(s)	148, 480, 510, 529, 666
DpnI	GATC	3 cut(s)	9, 358, 677
DpnII	GATC	3 cut(s)	7, 356, 675
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	2 cut(s)	665, 735
EarI	CTCTTC	2 cut(s)	665, 735
Eco130I	CCWWGG	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	753
Eco24I	GRGCYC	1 cut(s)	903
Eco47I	GGWCC	3 cut(s)	48, 778, 796
Eco88I	CYCGRG	2 cut(s)	544, 821
Eco91I	GGTNACC	1 cut(s)	398
EcoO109I	RGGNCCY	2 cut(s)	778, 796
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	3 cut(s)	103, 403, 970
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	9 cut(s)	55, 293, 469, 566, 590, 695, 764, 896, 997
FaqI	GGGAC	3 cut(s)	61, 599, 791
FatI	CATG	9 cut(s)	51, 289, 465, 562, 586, 691, 760, 892, 993
Fnu4HI	GCNGC	3 cut(s)	79, 190, 765
FokI	GGATG	4 cut(s)	614, 674, 769, 838
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	3 cut(s)	79, 190, 765
GlaI	GCGC	1 cut(s)	877
GluI	GCNGC	3 cut(s)	79, 190, 765
HaeII	RGCGCY	1 cut(s)	879
HaeIII	GGCC	2 cut(s)	537, 753
HapII	CCGG	2 cut(s)	822, 897
HhaI	GCGC	1 cut(s)	878
Hin1II	CATG	9 cut(s)	55, 293, 469, 566, 590, 695, 764, 896, 997
Hin6I	GCGC	1 cut(s)	876
HinP1I	GCGC	1 cut(s)	876
HincII	GTYRAC	2 cut(s)	154, 268
HindII	GTYRAC	2 cut(s)	154, 268
HinfI	GANTC	4 cut(s)	141, 146, 216, 683
HpaII	CCGG	2 cut(s)	822, 897
HphI	GGTGA	4 cut(s)	79, 635, 692, 986
Hpy166II	GTNNAC	2 cut(s)	154, 268
Hpy188I	TCNGA	2 cut(s)	12, 669
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	2 cut(s)	154, 268
HpyAV	CCTTC	2 cut(s)	389, 743
HpyCH4III	ACNGT	3 cut(s)	284, 613, 734
HpyCH4V	TGCA	9 cut(s)	81, 166, 192, 425, 566, 767, 829, 842, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	873, 898
HpyF3I	CTNAG	5 cut(s)	148, 480, 510, 529, 666
Hsp92II	CATG	9 cut(s)	55, 293, 469, 566, 590, 695, 764, 896, 997
HspAI	GCGC	1 cut(s)	876
KflI	GGGWCCC	1 cut(s)	778
Kzo9I	GATC	3 cut(s)	7, 356, 675
LmnI	GCTCC	3 cut(s)	181, 549, 810
Lsp1109I	GCAGC	3 cut(s)	65, 176, 751
LweI	GCATC	1 cut(s)	816
MabI	ACCWGGT	1 cut(s)	970
MaeIII	GTNAC	3 cut(s)	296, 398, 589
MalI	GATC	3 cut(s)	9, 358, 677
MboI	GATC	3 cut(s)	7, 356, 675
MboII	GAAGA	3 cut(s)	52, 682, 752
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	903
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	4 cut(s)	119, 230, 567, 844
MluNI	TGGCCA	1 cut(s)	537
MlyI	GAGTC	2 cut(s)	140, 692
MnlI	CCTC	8 cut(s)	100, 285, 319, 385, 666, 688, 768, 866
Mox20I	TGGCCA	1 cut(s)	537
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	3 cut(s)	369, 639, 801
MslI	CAYNNNNRTG	3 cut(s)	381, 452, 720
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	2 cut(s)	822, 897
MspR9I	CCNGG	6 cut(s)	105, 405, 822, 823, 898, 972
MvaI	CCWGG	3 cut(s)	105, 405, 972
MwoI	GCNNNNNNNGC	2 cut(s)	873, 898
NciI	CCSGG	3 cut(s)	822, 823, 898
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	3 cut(s)	7, 356, 675
NlaIII	CATG	9 cut(s)	55, 293, 469, 566, 590, 695, 764, 896, 997
NlaIV	GGNNCC	6 cut(s)	49, 358, 779, 780, 797, 923
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	3 cut(s)	764, 896, 997
PaeI	GCATGC	1 cut(s)	896
PceI	AGGCCT	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	141, 216
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	80, 191, 766
PleI	GAGTC	2 cut(s)	140, 691
PpsI	GAGTC	2 cut(s)	140, 691
PpuMI	RGGWCCY	2 cut(s)	778, 796
Psp5II	RGGWCCY	2 cut(s)	778, 796
Psp6I	CCWGG	3 cut(s)	103, 403, 970
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	3 cut(s)	103, 403, 970
PspN4I	GGNNCC	6 cut(s)	49, 358, 779, 780, 797, 923
PspPI	GGNCC	3 cut(s)	48, 778, 796
PspPPI	RGGWCCY	2 cut(s)	778, 796
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	2 cut(s)	477, 983
RsaNI	GTAC	2 cut(s)	476, 982
RseI	CAYNNNNRTG	3 cut(s)	381, 452, 720
SaqAI	TTAA	3 cut(s)	369, 639, 801
SatI	GCNGC	3 cut(s)	79, 190, 765
Sau3AI	GATC	3 cut(s)	7, 356, 675
Sau96I	GGNCC	3 cut(s)	48, 778, 796
SchI	GAGTC	2 cut(s)	140, 692
ScrFI	CCNGG	6 cut(s)	105, 405, 822, 823, 898, 972
SduI	GDGCHC	1 cut(s)	903
SexAI	ACCWGGT	1 cut(s)	970
SfaNI	GCATC	1 cut(s)	816
SinI	GGWCC	3 cut(s)	48, 778, 796
SmaI	CCCGGG	1 cut(s)	823
SmiMI	CAYNNNNRTG	3 cut(s)	381, 452, 720
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
SphI	GCATGC	1 cut(s)	896
Sse9I	AATT	4 cut(s)	119, 230, 567, 844
SseBI	AGGCCT	1 cut(s)	753
StuI	AGGCCT	1 cut(s)	753
StyD4I	CCNGG	6 cut(s)	103, 403, 820, 821, 896, 970
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	284, 613, 734
TaqI	TCGA	3 cut(s)	144, 558, 630
TasI	AATT	4 cut(s)	119, 230, 567, 844
TatI	WGTACW	1 cut(s)	981
TfiI	GAWTC	2 cut(s)	141, 216
Tru1I	TTAA	3 cut(s)	369, 639, 801
Tru9I	TTAA	3 cut(s)	369, 639, 801
TscAI	CASTG	2 cut(s)	667, 844
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	3 cut(s)	78, 189, 764
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	52, 618
TspGWI	ACGGA	1 cut(s)	258
TspMI	CCCGGG	1 cut(s)	821
TspRI	CASTG	2 cut(s)	667, 844
VpaK11BI	GGWCC	3 cut(s)	48, 778, 796
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	3 cut(s)	764, 896, 997
XmaI	CCCGGG	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.