Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011418

Physical Location & Seq

Genomic Coordinates Reverse (-)

66592023 .. 66593688

Gene Structure 1666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCCAAAAGAAACAGAAGGAGAAACAGAAACAGAAAGCATGGCAGATCAGAAAGCAGAAATCTTTGAACTCAACAATGGCACCATGCGAGTCCTCATCTCCAACTTGGGATGCACCATCACCTCCCTGTCTGTTCCTGGCAAAGACGGAGAATCGGCTGATGTTGTTCTTGGATTCGACTCTGTTGAGCCCTATTTGAAAGGGCTGGCTCCTTATTTTGGCTGCATTGTGGGCCGGGTCGCGAATAGGATCAAAGATGGCAAGTTTACACTCGATGGAACTGACTACTCTGTGTCTCTCAACAGGCCTCCAAATAGTCTCCATGGTATGGATCACTCTGTCCTGTTTCTCATTCTCTTAAATTCTGTTTCGATTAGCCGAGATCTGCTACGTGGTAACAAGGGTTATGACAAGCAGATATGGCAGGTAGCCGAACATAAGAAAGGCGATAAGCCGTCCATTACTTTCAAATATCATGGTCATGATGGGGAGGAAGGTTACCCGGGGAGTGTTTCTGTGACTGCAACTTATACACTTACTTCAAGCACTACTATGCGACTCGACATGGAAGCAGTGCCTGAGGACAAGCCTACCCCTATCAGCTTAGCTCAGCACACTTACTGGAACTTGGCTGGCCATAACTCAGGCGACGTACTTGACCACAGAGTTCAAATATGGGCTAACCACATTACCCCTGTGGATGAAAACACAGTTCCCACAGGTGAAATCATGCCAGTTAAAGGCACCCCCTTTGATTTCACTGCTGAGAGGAGGGTCGGTGAGTCCATCCATGAGGTTGGACTAGGGTACGATCACAACTATGTGCTTGATTGTGGGGAAGAGAAGGAAGGTTTGAAACATGCTGCTAAAGTGAGAGACCCTTCCAGCTCAAGGGTCCTTAACCTATGGAGCAATGCCCCTGGGATGCAGTTTTACACTGGGAATTATGTCAATTGTGTTCAAGGTAAAGGAGGTGCTGTCTATAATAAGCATGCAGGGCTCTGCTTGGAGACTCAGGGATTCCCAAATGCGATCAACACTCCAAACTTTCCATCTGTTGTTGTCCAACCTGGTGAGAAGTATAGAAACACCATGTTGTTCGAGTTTTCAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

372

Amino Acids

40.88

Weight (kDa)

5.4

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	22 - 367	1.8e-88	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17940
fragaria_vesca	FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica	MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica	Prupe.5G234200_v2.0.a1
pyrus_communis	pycom06g20410 pycom14g19790
rosa_chinensis	RchiOBHm_Chr7g0178251
rosa_laevigata	RLG00000005459
rosa_multiflora	Rmu_co8199974.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275040
rosa_rugosa	Rorug06G0415500 Rorug06G0415600
rosa_samantha	Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana	Rw7G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AccB1I	GGYRCC	2 cut(s)	80, 743
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccII	CGCG	1 cut(s)	242
AclWI	GGATC	2 cut(s)	257, 339
AcoI	YGGCCR	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	2 cut(s)	654, 809
AfiI	CCNNNNNNNGG	4 cut(s)	218, 328, 740, 891
AgsI	TTSAA	7 cut(s)	68, 199, 469, 543, 671, 856, 962
AjnI	CCWGG	3 cut(s)	136, 919, 1069
AluBI	AGCT	3 cut(s)	603, 608, 888
AluI	AGCT	3 cut(s)	603, 608, 888
Alw26I	GTCTC	4 cut(s)	300, 323, 870, 1004
AlwI	GGATC	2 cut(s)	257, 339
AlwNI	CAGNNNCTG	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	3 cut(s)	232, 305, 634
ApeKI	GCWGC	2 cut(s)	222, 863
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	232, 895
AsuC2I	CCSGG	3 cut(s)	236, 503, 504
AsuHPI	GGTGA	4 cut(s)	112, 734, 791, 1085
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	895
AxyI	CCTNAGG	1 cut(s)	579
BalI	TGGCCA	1 cut(s)	636
BanI	GGYRCC	2 cut(s)	80, 743
BanII	GRGCYC	2 cut(s)	192, 1002
BbvI	GCAGC	2 cut(s)	209, 850
BccI	CCATC	6 cut(s)	125, 251, 269, 479, 794, 1060
BceAI	ACGGC	1 cut(s)	439
BciT130I	CCWGG	3 cut(s)	138, 921, 1071
BcnI	CCSGG	3 cut(s)	236, 503, 504
BcoDI	GTCTC	4 cut(s)	300, 323, 870, 1004
BfaI	CTAG	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	415
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	2 cut(s)	223, 864
BlpI	GCTNAGC	2 cut(s)	604, 609
BlsI	GCNGC	2 cut(s)	224, 865
Bme1390I	CCNGG	6 cut(s)	138, 236, 503, 504, 921, 1071
Bme18I	GGWCC	1 cut(s)	895
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	232, 895
BmiI	GGNNCC	4 cut(s)	82, 210, 745, 896
BmrFI	CCNGG	6 cut(s)	138, 236, 503, 504, 921, 1071
BmrI	ACTGGG	1 cut(s)	948
BmsI	GCATC	2 cut(s)	101, 915
BmuI	ACTGGG	1 cut(s)	948
Bpu1102I	GCTNAGC	2 cut(s)	604, 609
BpuEI	CTTGAG	1 cut(s)	874
BpuMI	CCSGG	3 cut(s)	236, 503, 504
BsaAI	YACGTR	1 cut(s)	392
BsaI	GGTCTC	1 cut(s)	870
BsaJI	CCNNGG	5 cut(s)	322, 502, 503, 919, 920
BsaXI	ACNNNNNCTCC	4 cut(s)	763, 793, 963, 993
Bsc4I	CCNNNNNNNGG	4 cut(s)	218, 328, 740, 891
Bse1I	ACTGG	3 cut(s)	626, 734, 943
Bse21I	CCTNAGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	919
BseBI	CCWGG	3 cut(s)	138, 921, 1071
BseDI	CCNNGG	5 cut(s)	322, 502, 503, 919, 920
BseGI	GGATG	4 cut(s)	116, 706, 786, 930
BseLI	CCNNNNNNNGG	4 cut(s)	218, 328, 740, 891
BseMI	GCAATG	1 cut(s)	919
BseMII	CTCAG	5 cut(s)	570, 623, 657, 756, 1028
BseNI	ACTGG	3 cut(s)	626, 734, 943
BseRI	GAGGAG	1 cut(s)	784
BseXI	GCAGC	2 cut(s)	209, 850
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	3 cut(s)	234, 307, 636
BshNI	GGYRCC	2 cut(s)	80, 743
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	2 cut(s)	235, 503
BslI	CCNNNNNNNGG	4 cut(s)	218, 328, 740, 891
BsmAI	GTCTC	4 cut(s)	300, 323, 870, 1004
BsnI	GGCC	3 cut(s)	234, 307, 636
Bso31I	GGTCTC	1 cut(s)	870
BsoBI	CYCGRG	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	192, 1002
Bsp143I	GATC	6 cut(s)	46, 249, 331, 382, 811, 1032
Bsp1720I	GCTNAGC	2 cut(s)	604, 609
Bsp19I	CCATGG	1 cut(s)	322
Bsp68I	TCGCGA	1 cut(s)	242
BspANI	GGCC	3 cut(s)	234, 307, 636
BspCNI	CTCAG	5 cut(s)	571, 622, 656, 757, 1027
BspFNI	CGCG	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	4 cut(s)	82, 210, 745, 896
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	2 cut(s)	257, 339
BspT107I	GGYRCC	2 cut(s)	80, 743
BspTNI	GGTCTC	1 cut(s)	870
BsrDI	GCAATG	1 cut(s)	919
BsrI	ACTGG	3 cut(s)	626, 734, 943
BssECI	CCNNGG	5 cut(s)	322, 502, 503, 919, 920
BssMI	GATC	6 cut(s)	46, 249, 331, 382, 811, 1032
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	3 cut(s)	138, 921, 1071
Bst4CI	ACNGT	1 cut(s)	712
Bst6I	CTCTTC	1 cut(s)	834
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	207, 634, 993
BstDEI	CTNAG	6 cut(s)	579, 604, 609, 643, 765, 1014
BstDSI	CCRYGG	1 cut(s)	322
BstEII	GGTNACC	1 cut(s)	497
BstF5I	GGATG	4 cut(s)	116, 706, 786, 930
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	6 cut(s)	49, 252, 334, 385, 814, 1035
BstMAI	GTCTC	4 cut(s)	300, 323, 870, 1004
BstMBI	GATC	6 cut(s)	46, 249, 331, 382, 811, 1032
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 421, 997
BstNI	CCWGG	3 cut(s)	138, 921, 1071
BstNSI	RCATGY	2 cut(s)	863, 995
BstPI	GGTNACC	1 cut(s)	497
BstSCI	CCNGG	6 cut(s)	136, 234, 501, 502, 919, 1069
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	209, 850
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	382
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	3 cut(s)	234, 307, 636
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	4 cut(s)	116, 706, 786, 930
BtsI	GCAGTG	2 cut(s)	579, 759
BtsIMutI	CAGTG	3 cut(s)	579, 759, 936
BtuMI	TCGCGA	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	3 cut(s)	207, 634, 993
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	232, 895
Cfr9I	CCCGGG	1 cut(s)	502
CsiI	ACCWGGT	1 cut(s)	1069
Csp6I	GTAC	2 cut(s)	653, 808
CviQI	GTAC	2 cut(s)	653, 808
DdeI	CTNAG	6 cut(s)	579, 604, 609, 643, 765, 1014
DpnI	GATC	6 cut(s)	48, 251, 333, 384, 813, 1034
DpnII	GATC	6 cut(s)	46, 249, 331, 382, 811, 1032
EaeI	YGGCCR	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
Eco130I	CCWWGG	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	307
Eco24I	GRGCYC	2 cut(s)	192, 1002
Eco31I	GGTCTC	1 cut(s)	870
Eco47I	GGWCC	1 cut(s)	895
Eco81I	CCTNAGG	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	502
Eco91I	GGTNACC	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	895
EcoO65I	GGTNACC	1 cut(s)	497
EcoRII	CCWGG	3 cut(s)	136, 919, 1069
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	2 cut(s)	192, 1002
ErhI	CCWWGG	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	223, 864
FokI	GGATG	4 cut(s)	123, 713, 773, 937
FriOI	GRGCYC	2 cut(s)	192, 1002
Fsp4HI	GCNGC	2 cut(s)	223, 864
FspBI	CTAG	1 cut(s)	803
GluI	GCNGC	2 cut(s)	223, 864
HaeIII	GGCC	3 cut(s)	234, 307, 636
HapII	CCGG	2 cut(s)	235, 503
HinfI	GANTC	8 cut(s)	90, 152, 174, 179, 558, 782, 1012, 1020
HpaII	CCGG	2 cut(s)	235, 503
HphI	GGTGA	4 cut(s)	112, 734, 791, 1085
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	241, 482
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	1 cut(s)	653
HpyAV	CCTTC	5 cut(s)	11, 488, 838, 842, 891
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4IV	ACGT	2 cut(s)	391, 651
HpyCH4V	TGCA	5 cut(s)	114, 225, 524, 928, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 421, 997
HpyF3I	CTNAG	6 cut(s)	579, 604, 609, 643, 765, 1014
HpySE526I	ACGT	2 cut(s)	391, 651
Kzo9I	GATC	6 cut(s)	46, 249, 331, 382, 811, 1032
LmnI	GCTCC	2 cut(s)	214, 909
Lsp1109I	GCAGC	2 cut(s)	209, 850
LweI	GCATC	2 cut(s)	101, 915
MabI	ACCWGGT	1 cut(s)	1069
MaeI	CTAG	1 cut(s)	803
MaeII	ACGT	2 cut(s)	391, 651
MaeIII	GTNAC	3 cut(s)	395, 497, 517
MalI	GATC	6 cut(s)	48, 251, 333, 384, 813, 1034
MboI	GATC	6 cut(s)	46, 249, 331, 382, 811, 1032
MboII	GAAGA	1 cut(s)	851
MfeI	CAATTG	1 cut(s)	952
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	192, 1002
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	3 cut(s)	361, 943, 952
MluNI	TGGCCA	1 cut(s)	636
MlyI	GAGTC	5 cut(s)	99, 173, 552, 791, 1006
MmeI	TCCRAC	3 cut(s)	126, 778, 1090
MnlI	CCTC	9 cut(s)	104, 133, 318, 484, 574, 762, 765, 787, 965
Mox20I	TGGCCA	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	3 cut(s)	359, 738, 900
MslI	CAYNNNNRTG	3 cut(s)	480, 551, 819
Msp20I	TGGCCA	1 cut(s)	636
MspI	CCGG	2 cut(s)	235, 503
MspR9I	CCNGG	6 cut(s)	138, 236, 503, 504, 921, 1071
MunI	CAATTG	1 cut(s)	952
MvaI	CCWGG	3 cut(s)	138, 921, 1071
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	231, 421, 997
NciI	CCSGG	3 cut(s)	236, 503, 504
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	6 cut(s)	46, 249, 331, 382, 811, 1032
NlaIV	GGNNCC	4 cut(s)	82, 210, 745, 896
NmeAIII	GCCGAG	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	517
NruI	TCGCGA	1 cut(s)	242
NspI	RCATGY	2 cut(s)	863, 995
PaeI	GCATGC	1 cut(s)	995
PagI	TCATGA	1 cut(s)	481
PasI	CCCWGGG	1 cut(s)	920
PceI	AGGCCT	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	152, 174, 1020
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	224, 865
PleI	GAGTC	5 cut(s)	98, 173, 552, 790, 1006
PpsI	GAGTC	5 cut(s)	98, 173, 552, 790, 1006
Ppu21I	YACGTR	1 cut(s)	392
PpuMI	RGGWCCY	1 cut(s)	895
Psp5II	RGGWCCY	1 cut(s)	895
Psp6I	CCWGG	3 cut(s)	136, 919, 1069
PspEI	GGTNACC	1 cut(s)	497
PspGI	CCWGG	3 cut(s)	136, 919, 1069
PspN4I	GGNNCC	4 cut(s)	82, 210, 745, 896
PspPI	GGNCC	2 cut(s)	232, 895
PspPPI	RGGWCCY	1 cut(s)	895
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	382
RruI	TCGCGA	1 cut(s)	242
RsaI	GTAC	2 cut(s)	654, 809
RsaNI	GTAC	2 cut(s)	653, 808
RseI	CAYNNNNRTG	3 cut(s)	480, 551, 819
SaqAI	TTAA	3 cut(s)	359, 738, 900
SatI	GCNGC	2 cut(s)	223, 864
Sau3AI	GATC	6 cut(s)	46, 249, 331, 382, 811, 1032
Sau96I	GGNCC	2 cut(s)	232, 895
SchI	GAGTC	5 cut(s)	99, 173, 552, 791, 1006
ScrFI	CCNGG	6 cut(s)	138, 236, 503, 504, 921, 1071
SduI	GDGCHC	2 cut(s)	192, 1002
SexAI	ACCWGGT	1 cut(s)	1069
SfaNI	GCATC	2 cut(s)	101, 915
SinI	GGWCC	1 cut(s)	895
SmaI	CCCGGG	1 cut(s)	504
SmiMI	CAYNNNNRTG	3 cut(s)	480, 551, 819
SmlI	CTYRAG	1 cut(s)	889
SmoI	CTYRAG	1 cut(s)	889
SphI	GCATGC	1 cut(s)	995
Sse9I	AATT	3 cut(s)	361, 943, 952
SseBI	AGGCCT	1 cut(s)	307
SspMI	CTAG	1 cut(s)	803
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	6 cut(s)	136, 234, 501, 502, 919, 1069
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	712
TaiI	ACGT	2 cut(s)	394, 654
TaqI	TCGA	5 cut(s)	177, 273, 371, 561, 1101
TasI	AATT	3 cut(s)	361, 943, 952
TfiI	GAWTC	3 cut(s)	152, 174, 1020
Tru1I	TTAA	3 cut(s)	359, 738, 900
Tru9I	TTAA	3 cut(s)	359, 738, 900
TscAI	CASTG	3 cut(s)	579, 766, 943
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	2 cut(s)	222, 863
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	717
TspGWI	ACGGA	1 cut(s)	162
TspMI	CCCGGG	1 cut(s)	502
TspRI	CASTG	3 cut(s)	579, 766, 943
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	895
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	2 cut(s)	863, 995
XmaI	CCCGGG	1 cut(s)	502
XspI	CTAG	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.