Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011418

Physical Location & Seq

Genomic Coordinates Reverse (-)

9975330 .. 9977310

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAGATCAGAAAGCAGAGATCTTCGAACTCAACAATGGTACCATGAAAGTCCTCATCTCCAACCTGGGCTGCACCATCACCTCCTTGTCTGTTCCCGGGAAGGACGGAAAATCGGCTGATGTTGTTCTTGGATTCGACTCTGTTGAGCCTTATTTGAAAGGGATGGCTCCTTATTTTGGCTGCATTGTGGGCCGGGTGGCGAATAGAATCAAGGAAGGCAAGTTTACACTCAATGGAACTCAGTACTCTTTGCCCATCAACAACCCTCCTAACAGTCTCCATGGTGGTAACAAGGGTTATGATAAGCAGATATGGCAGGTAGCCGAGCATAAGGCAGGCGACAAACCATCTATTACATTCAAATATCATAGTCATGATGGGGAGGAAGGTTACCCGGGGAGTGTTTCTGTGACTGCAACTTATACGCTTACTTCAAGCACTACGATGAGACTTGACATGGAAGCAGTGCCTGAGAACAAGCCTACCCCTATCAGCTTAGCTCAGCACACCTACTGGAACTTGGCTGGCCATAACTCAGGCGATGTACTTGACCACAGAGTTCAAATATGGGCCAACCACATTACCCCTGTGGGTGAAAACACAGTTCCCACAGGTGAAATCAAGCCAATTAAAGGCACTCCCTTTGATTTCACTGCTGAGAGGAGAGTTGGTGAGTCCATCCATGAGGTTGGACTAGGGTACGATCACAACTATGTGCTTGACTGTGGGGAAGAGAAGGAAGGTTTGAAACATGCTGCCAAAGTGAGAGACCCTTCCAGCTCAAGGGTCCTTAACCTATGGACCAATGCCCCTGGGATGCAGTTTTACACCGGGAATTATGTCAATGGTGTTCAAGGTAAAGGAGGTGCTGTTTATAATAAGCATGCAGGGCTCTGCTTGGAGACTCAGGGATTCCCAAATGCAATCAATACTCCGAACTTCCCATCTGTTGTTGTCCAACCTGGTGAAAAGTATAGAAACACCATGTTGTTCGAGTTTTCAGTTGAGTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

340

Amino Acids

37.07

Weight (kDa)

6.07

Isoelectric Point (pI)

23.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	9 - 332	1.3e-97	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17940
fragaria_vesca	FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica	MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica	Prupe.5G234200_v2.0.a1
pyrus_communis	pycom06g20410 pycom14g19790
rosa_chinensis	RchiOBHm_Chr7g0178251
rosa_laevigata	RLG00000005459
rosa_multiflora	Rmu_co8199974.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275040
rosa_rugosa	Rorug06G0415500 Rorug06G0415600
rosa_samantha	Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana	Rw7G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	879
Acc36I	ACCTGC	1 cut(s)	310
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	529
AfaI	GTAC	4 cut(s)	43, 248, 549, 704
AfiI	CCNNNNNNNGG	3 cut(s)	179, 635, 786
AgsI	TTSAA	6 cut(s)	160, 364, 438, 566, 751, 857
AjnI	CCWGG	3 cut(s)	66, 814, 964
AluBI	AGCT	3 cut(s)	498, 503, 783
AluI	AGCT	3 cut(s)	498, 503, 783
Alw26I	GTCTC	4 cut(s)	284, 445, 765, 899
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	2 cut(s)	98, 397
AoxI	GGCC	3 cut(s)	193, 529, 573
ApeKI	GCWGC	3 cut(s)	72, 183, 758
Asp718I	GGTACC	1 cut(s)	41
AspS9I	GGNCC	4 cut(s)	193, 573, 790, 804
AsuC2I	CCSGG	6 cut(s)	99, 100, 197, 398, 399, 835
AsuHPI	GGTGA	5 cut(s)	73, 608, 629, 686, 980
AsuII	TTCGAA	1 cut(s)	27
AvaI	CYCGRG	2 cut(s)	98, 397
AvaII	GGWCC	2 cut(s)	790, 804
BaeI	ACNNNNGTAYC	2 cut(s)	25, 58
BalI	TGGCCA	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	897
BbvI	GCAGC	3 cut(s)	59, 170, 745
BccI	CCATC	7 cut(s)	86, 160, 266, 358, 374, 689, 955
BciT130I	CCWGG	3 cut(s)	68, 816, 966
BcnI	CCSGG	6 cut(s)	99, 100, 197, 398, 399, 835
BcoDI	GTCTC	4 cut(s)	284, 445, 765, 899
BfaI	CTAG	1 cut(s)	698
BfuAI	ACCTGC	1 cut(s)	310
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	3 cut(s)	73, 184, 759
BlpI	GCTNAGC	2 cut(s)	499, 504
BlsI	GCNGC	3 cut(s)	74, 185, 760
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	9 cut(s)	68, 99, 100, 197, 398, 399, 816, 835, 966
Bme18I	GGWCC	2 cut(s)	790, 804
BmeT110I	CYCGRG	2 cut(s)	98, 397
BmgT120I	GGNCC	4 cut(s)	193, 573, 790, 804
BmiI	GGNNCC	3 cut(s)	43, 171, 791
BmrFI	CCNGG	9 cut(s)	68, 99, 100, 197, 398, 399, 816, 835, 966
BmsI	GCATC	1 cut(s)	810
Bpu1102I	GCTNAGC	2 cut(s)	499, 504
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	769
BpuMI	CCSGG	6 cut(s)	99, 100, 197, 398, 399, 835
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	7 cut(s)	67, 98, 283, 397, 398, 814, 815
BsaXI	ACNNNNNCTCC	4 cut(s)	658, 688, 858, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 635, 786
Bse1I	ACTGG	1 cut(s)	521
BseBI	CCWGG	3 cut(s)	68, 816, 966
BseDI	CCNNGG	7 cut(s)	67, 98, 283, 397, 398, 814, 815
BseGI	GGATG	3 cut(s)	171, 681, 825
BseLI	CCNNNNNNNGG	3 cut(s)	179, 635, 786
BseMII	CTCAG	6 cut(s)	257, 465, 518, 552, 651, 923
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	679
BseXI	GCAGC	3 cut(s)	59, 170, 745
BsgI	GTGCAG	1 cut(s)	58
BshFI	GGCC	3 cut(s)	195, 531, 575
BshNI	GGYRCC	1 cut(s)	41
BsiHKCI	CYCGRG	2 cut(s)	98, 397
BsiSI	CCGG	4 cut(s)	99, 196, 398, 834
BslI	CCNNNNNNNGG	3 cut(s)	179, 635, 786
BsmAI	GTCTC	4 cut(s)	284, 445, 765, 899
BsnI	GGCC	3 cut(s)	195, 531, 575
Bso31I	GGTCTC	1 cut(s)	765
BsoBI	CYCGRG	2 cut(s)	98, 397
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	3 cut(s)	7, 21, 706
Bsp1720I	GCTNAGC	2 cut(s)	499, 504
Bsp19I	CCATGG	1 cut(s)	283
BspANI	GGCC	3 cut(s)	195, 531, 575
BspCNI	CTCAG	6 cut(s)	256, 466, 517, 551, 652, 922
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	3 cut(s)	43, 171, 791
BspMI	ACCTGC	1 cut(s)	310
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	765
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	7 cut(s)	67, 98, 283, 397, 398, 814, 815
BssMI	GATC	3 cut(s)	7, 21, 706
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	3 cut(s)	68, 816, 966
Bst4CI	ACNGT	3 cut(s)	278, 607, 728
Bst6I	CTCTTC	1 cut(s)	729
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	340, 529, 888
BstDEI	CTNAG	7 cut(s)	243, 474, 499, 504, 538, 660, 909
BstDSI	CCRYGG	1 cut(s)	283
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	3 cut(s)	171, 681, 825
BstKTI	GATC	3 cut(s)	10, 24, 709
BstMAI	GTCTC	4 cut(s)	284, 445, 765, 899
BstMBI	GATC	3 cut(s)	7, 21, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 316, 892
BstNI	CCWGG	3 cut(s)	68, 816, 966
BstNSI	RCATGY	2 cut(s)	758, 890
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	9 cut(s)	66, 97, 98, 195, 396, 397, 814, 833, 964
BstV1I	GCAGC	3 cut(s)	59, 170, 745
BstX2I	RGATCY	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	195, 531, 575
BtgI	CCRYGG	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	558
BtsCI	GGATG	3 cut(s)	171, 681, 825
BtsI	GCAGTG	2 cut(s)	474, 654
BtsIMutI	CAGTG	2 cut(s)	474, 654
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	3 cut(s)	340, 529, 888
CaiI	CAGNNNCTG	1 cut(s)	473
CciI	TCATGA	1 cut(s)	376
Cfr13I	GGNCC	4 cut(s)	193, 573, 790, 804
Cfr9I	CCCGGG	2 cut(s)	98, 397
CsiI	ACCWGGT	1 cut(s)	964
Csp6I	GTAC	4 cut(s)	42, 247, 548, 703
CviAII	CATG	8 cut(s)	46, 284, 377, 460, 686, 755, 887, 988
CviQI	GTAC	4 cut(s)	42, 247, 548, 703
DdeI	CTNAG	7 cut(s)	243, 474, 499, 504, 538, 660, 909
DpnI	GATC	3 cut(s)	9, 23, 708
DpnII	GATC	3 cut(s)	7, 21, 706
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	897
Eco31I	GGTCTC	1 cut(s)	765
Eco47I	GGWCC	2 cut(s)	790, 804
Eco88I	CYCGRG	2 cut(s)	98, 397
Eco91I	GGTNACC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	790
EcoO65I	GGTNACC	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	66, 814, 964
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	897
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	8 cut(s)	49, 287, 380, 463, 689, 758, 890, 991
FatI	CATG	8 cut(s)	45, 283, 376, 459, 685, 754, 886, 987
Fnu4HI	GCNGC	3 cut(s)	73, 184, 759
FokI	GGATG	3 cut(s)	178, 668, 832
FriOI	GRGCYC	1 cut(s)	897
Fsp4HI	GCNGC	3 cut(s)	73, 184, 759
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	3 cut(s)	73, 184, 759
HaeIII	GGCC	3 cut(s)	195, 531, 575
HapII	CCGG	4 cut(s)	99, 196, 398, 834
Hin1II	CATG	8 cut(s)	49, 287, 380, 463, 689, 758, 890, 991
HinfI	GANTC	6 cut(s)	135, 140, 210, 677, 907, 915
HpaII	CCGG	4 cut(s)	99, 196, 398, 834
HphI	GGTGA	5 cut(s)	73, 608, 629, 686, 980
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	12, 939
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	6 cut(s)	97, 212, 383, 733, 737, 786
HpyCH4III	ACNGT	3 cut(s)	278, 607, 728
HpyCH4V	TGCA	6 cut(s)	75, 186, 419, 823, 890, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 316, 892
HpyF3I	CTNAG	7 cut(s)	243, 474, 499, 504, 538, 660, 909
Hsp92II	CATG	8 cut(s)	49, 287, 380, 463, 689, 758, 890, 991
KpnI	GGTACC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	7, 21, 706
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	3 cut(s)	59, 170, 745
LweI	GCATC	1 cut(s)	810
MabI	ACCWGGT	1 cut(s)	964
MaeI	CTAG	1 cut(s)	698
MaeIII	GTNAC	3 cut(s)	290, 392, 412
MalI	GATC	3 cut(s)	9, 23, 708
MboI	GATC	3 cut(s)	7, 21, 706
MboII	GAAGA	2 cut(s)	16, 746
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	897
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	2 cut(s)	630, 838
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	3 cut(s)	134, 686, 901
MmeI	TCCRAC	3 cut(s)	87, 673, 985
MnlI	CCTC	7 cut(s)	65, 94, 279, 379, 657, 682, 860
Mox20I	TGGCCA	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	2 cut(s)	633, 795
MslI	CAYNNNNRTG	3 cut(s)	375, 446, 714
Msp20I	TGGCCA	1 cut(s)	531
MspI	CCGG	4 cut(s)	99, 196, 398, 834
MspR9I	CCNGG	9 cut(s)	68, 99, 100, 197, 398, 399, 816, 835, 966
MvaI	CCWGG	3 cut(s)	68, 816, 966
MwoI	GCNNNNNNNGC	3 cut(s)	192, 316, 892
NciI	CCSGG	6 cut(s)	99, 100, 197, 398, 399, 835
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	3 cut(s)	7, 21, 706
NlaIII	CATG	8 cut(s)	49, 287, 380, 463, 689, 758, 890, 991
NlaIV	GGNNCC	3 cut(s)	43, 171, 791
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	2 cut(s)	758, 890
NspV	TTCGAA	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	890
PagI	TCATGA	1 cut(s)	376
PasI	CCCWGGG	1 cut(s)	815
PfeI	GAWTC	3 cut(s)	135, 210, 915
PkrI	GCNGC	3 cut(s)	74, 185, 760
PleI	GAGTC	3 cut(s)	134, 685, 901
PpsI	GAGTC	3 cut(s)	134, 685, 901
PpuMI	RGGWCCY	1 cut(s)	790
PsiI	TTATAA	1 cut(s)	879
Psp5II	RGGWCCY	1 cut(s)	790
Psp6I	CCWGG	3 cut(s)	66, 814, 964
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	3 cut(s)	66, 814, 964
PspN4I	GGNNCC	3 cut(s)	43, 171, 791
PspPI	GGNCC	4 cut(s)	193, 573, 790, 804
PspPPI	RGGWCCY	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	4 cut(s)	43, 248, 549, 704
RsaNI	GTAC	4 cut(s)	42, 247, 548, 703
RseI	CAYNNNNRTG	3 cut(s)	375, 446, 714
SaqAI	TTAA	2 cut(s)	633, 795
SatI	GCNGC	3 cut(s)	73, 184, 759
Sau3AI	GATC	3 cut(s)	7, 21, 706
Sau96I	GGNCC	4 cut(s)	193, 573, 790, 804
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	3 cut(s)	134, 686, 901
ScrFI	CCNGG	9 cut(s)	68, 99, 100, 197, 398, 399, 816, 835, 966
SduI	GDGCHC	1 cut(s)	897
SexAI	ACCWGGT	1 cut(s)	964
SfaNI	GCATC	1 cut(s)	810
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	2 cut(s)	790, 804
SmaI	CCCGGG	2 cut(s)	100, 399
SmiMI	CAYNNNNRTG	3 cut(s)	375, 446, 714
SmlI	CTYRAG	1 cut(s)	784
SmoI	CTYRAG	1 cut(s)	784
SphI	GCATGC	1 cut(s)	890
Sse9I	AATT	2 cut(s)	630, 838
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	9 cut(s)	66, 97, 98, 195, 396, 397, 814, 833, 964
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	278, 607, 728
TaqI	TCGA	3 cut(s)	27, 138, 996
TasI	AATT	2 cut(s)	630, 838
TatI	WGTACW	2 cut(s)	246, 547
TfiI	GAWTC	3 cut(s)	135, 210, 915
Tru1I	TTAA	2 cut(s)	633, 795
Tru9I	TTAA	2 cut(s)	633, 795
TscAI	CASTG	2 cut(s)	474, 661
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	3 cut(s)	72, 183, 758
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	62
TspGWI	ACGGA	1 cut(s)	123
TspMI	CCCGGG	2 cut(s)	98, 397
TspRI	CASTG	2 cut(s)	474, 661
VpaK11BI	GGWCC	2 cut(s)	790, 804
XceI	RCATGY	2 cut(s)	758, 890
XmaI	CCCGGG	2 cut(s)	98, 397
XspI	CTAG	1 cut(s)	698
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.