RchiOBHm_Chr7g0178251

Converts alpha-aldose to the beta-anomer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011418
Physical Location & Seq
Forward (+)
967040 .. 968931
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15885

Sequence Viewer

Length: 1047 bp
ATGCCAATAGAAACAGAAAGAGAAACAGAAAGCATGGCAGATCAGAAAGCAGAAATCTTTGAACTCAACAATGGCACCATGCGAGTCCTCATCTCCAACTTGGGCTGCACCATCACCTCCTTGTCTGTTCCTGGCAAAGACGGAAAATCGGCTGATGTTGTGCTTGGATTCGACTCTGTTGAGCCCTATTTGAAAGGGCTGGCTCCTTATTTTGGCTGCATTGTGGGCCGGGTCGCCAATAGGATCAAAGATGGCAAGTTTACACTCAATGGAACTGACTATTCTGTGTCTCTCAACAGGCCTCCAAACAGTCTCCATGGTGGTAACAAGGGTTATGACAAGCAGATATGGCAGGTAGCCGAACATAAGAAAGACGATAAGCCGTCCATTACTTTCAAATATCATAGTCATGATGGGGAGGAAGGTTACCCGGGGAGTGTTTCTGTGACTGCAACTTATACACTTACTTCAAGCACTACTATGCAACTCGACATGGAAGCAGTGCCTGAGAACAAGCCTACCCCTATCAGCTTAGCTCAGCACACTTACTGGAACTTGGCTGGCCATAACTCAGGCGACGTACTTGACCACAGAGTTCAAATATGGGCTAACCACATTACCCCTGTGGATGAAAACACAGTTCCCACAGGTGAAATCATGCCGGTTAAAGGCACCCCCTTTGATTTCACTGCTGAGAGGAGGGTTGGTGAGTCCATCCATGAGGTTGGACTAGGGTACGATCACAACTATGTGCTTGATTGTGGGGAAGAGAAGGAAGGTTTGAAACATGCTGCTAAAGTGAGAGACCCTTCCAGCTCAAGGGTCCTTAACCTATGGAGCAATGCCCCTGGGATGCAGTTTTACACTGGGAATTATGTCGATTGTGTTCAAGGTAAAGGAGGTGCTGTTTATAATAAGCATGCAGGGCTCTGCTTGGAGACTCAGGGATTCCCAAATGCAATCAACACTCCAAACTTCCCATCTGTTGTTGTCCAACCTGGTGAGAAGTATAGAAACACCATGTTGTTTGAGTTTTCAGTTGAGTGA

Protein Analysis

348

Amino Acids

38.26

Weight (kDa)

5.48

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 20 - 343 1.9e-95 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17940
fragaria_vesca FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica Prupe.5G234200_v2.0.a1
pyrus_communis pycom06g20410 pycom14g19790
rosa_chinensis RchiOBHm_Chr7g0178251
rosa_laevigata RLG00000005459
rosa_multiflora Rmu_co8199974.1_g000001
rosa_roxburghii Rroxscaffold_3G00275040
rosa_rugosa Rorug06G0415500 Rorug06G0415600
rosa_samantha Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana Rw7G001140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 912
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 2 cut(s) 74, 671
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 562
AfaI GTAC 2 cut(s) 582, 737
AfiI CCNNNNNNNGG 3 cut(s) 212, 668, 819
AgsI TTSAA 7 cut(s) 62, 193, 397, 471, 599, 784, 890
AjnI CCWGG 3 cut(s) 130, 847, 997
AluBI AGCT 3 cut(s) 531, 536, 816
AluI AGCT 3 cut(s) 531, 536, 816
Alw26I GTCTC 4 cut(s) 294, 317, 798, 932
AlwI GGATC 1 cut(s) 251
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 3 cut(s) 226, 299, 562
ApeKI GCWGC 3 cut(s) 105, 216, 791
AspS9I GGNCC 2 cut(s) 226, 823
AsuC2I CCSGG 3 cut(s) 230, 431, 432
AsuHPI GGTGA 4 cut(s) 106, 662, 719, 1013
AvaI CYCGRG 1 cut(s) 430
AvaII GGWCC 1 cut(s) 823
BalI TGGCCA 1 cut(s) 564
BanI GGYRCC 2 cut(s) 74, 671
BanII GRGCYC 2 cut(s) 186, 930
BbvI GCAGC 3 cut(s) 92, 203, 778
BccI CCATC 5 cut(s) 119, 245, 407, 722, 988
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 3 cut(s) 132, 849, 999
BcnI CCSGG 3 cut(s) 230, 431, 432
BcoDI GTCTC 4 cut(s) 294, 317, 798, 932
BfaI CTAG 1 cut(s) 731
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 3 cut(s) 106, 217, 792
BlpI GCTNAGC 2 cut(s) 532, 537
BlsI GCNGC 3 cut(s) 107, 218, 793
Bme1390I CCNGG 6 cut(s) 132, 230, 431, 432, 849, 999
Bme18I GGWCC 1 cut(s) 823
BmeT110I CYCGRG 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 226, 823
BmiI GGNNCC 4 cut(s) 76, 204, 673, 824
BmrFI CCNGG 6 cut(s) 132, 230, 431, 432, 849, 999
BmrI ACTGGG 1 cut(s) 876
BmsI GCATC 1 cut(s) 843
BmuI ACTGGG 1 cut(s) 876
Bpu1102I GCTNAGC 2 cut(s) 532, 537
BpuEI CTTGAG 1 cut(s) 802
BpuMI CCSGG 3 cut(s) 230, 431, 432
BsaI GGTCTC 1 cut(s) 798
BsaJI CCNNGG 5 cut(s) 316, 430, 431, 847, 848
BsaXI ACNNNNNCTCC 4 cut(s) 691, 721, 891, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 668, 819
Bse118I RCCGGY 1 cut(s) 661
Bse1I ACTGG 2 cut(s) 554, 871
Bse3DI GCAATG 1 cut(s) 847
BseBI CCWGG 3 cut(s) 132, 849, 999
BseDI CCNNGG 5 cut(s) 316, 430, 431, 847, 848
BseGI GGATG 3 cut(s) 634, 714, 858
BseLI CCNNNNNNNGG 3 cut(s) 212, 668, 819
BseMI GCAATG 1 cut(s) 847
BseMII CTCAG 5 cut(s) 498, 551, 585, 684, 956
BseNI ACTGG 2 cut(s) 554, 871
BseRI GAGGAG 1 cut(s) 712
BseXI GCAGC 3 cut(s) 92, 203, 778
BsgI GTGCAG 1 cut(s) 91
BshFI GGCC 3 cut(s) 228, 301, 564
BshNI GGYRCC 2 cut(s) 74, 671
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 3 cut(s) 229, 431, 662
BslI CCNNNNNNNGG 3 cut(s) 212, 668, 819
BsmAI GTCTC 4 cut(s) 294, 317, 798, 932
BsnI GGCC 3 cut(s) 228, 301, 564
Bso31I GGTCTC 1 cut(s) 798
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 2 cut(s) 186, 930
Bsp143I GATC 3 cut(s) 40, 243, 739
Bsp1720I GCTNAGC 2 cut(s) 532, 537
Bsp19I CCATGG 1 cut(s) 316
BspANI GGCC 3 cut(s) 228, 301, 564
BspCNI CTCAG 5 cut(s) 499, 550, 584, 685, 955
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 4 cut(s) 76, 204, 673, 824
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 251
BspT107I GGYRCC 2 cut(s) 74, 671
BspTNI GGTCTC 1 cut(s) 798
BsrDI GCAATG 1 cut(s) 847
BsrFI RCCGGY 1 cut(s) 661
BsrI ACTGG 2 cut(s) 554, 871
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 5 cut(s) 316, 430, 431, 847, 848
BssMI GATC 3 cut(s) 40, 243, 739
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 3 cut(s) 132, 849, 999
Bst4CI ACNGT 2 cut(s) 311, 640
Bst6I CTCTTC 1 cut(s) 762
BstC8I GCNNGC 3 cut(s) 201, 562, 921
BstDEI CTNAG 6 cut(s) 507, 532, 537, 571, 693, 942
BstDSI CCRYGG 1 cut(s) 316
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 3 cut(s) 634, 714, 858
BstKTI GATC 3 cut(s) 43, 246, 742
BstMAI GTCTC 4 cut(s) 294, 317, 798, 932
BstMBI GATC 3 cut(s) 40, 243, 739
BstMWI GCNNNNNNNGC 3 cut(s) 225, 349, 925
BstNI CCWGG 3 cut(s) 132, 849, 999
BstNSI RCATGY 2 cut(s) 791, 923
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 6 cut(s) 130, 228, 429, 430, 847, 997
BstV1I GCAGC 3 cut(s) 92, 203, 778
BstXI CCANNNNNNTGG 1 cut(s) 725
BsuRI GGCC 3 cut(s) 228, 301, 564
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 3 cut(s) 634, 714, 858
BtsI GCAGTG 2 cut(s) 507, 687
BtsIMutI CAGTG 3 cut(s) 507, 687, 864
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 3 cut(s) 201, 562, 921
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 661
Cfr13I GGNCC 2 cut(s) 226, 823
Cfr9I CCCGGG 1 cut(s) 430
CsiI ACCWGGT 1 cut(s) 997
Csp6I GTAC 2 cut(s) 581, 736
CviQI GTAC 2 cut(s) 581, 736
DdeI CTNAG 6 cut(s) 507, 532, 537, 571, 693, 942
DpnI GATC 3 cut(s) 42, 245, 741
DpnII GATC 3 cut(s) 40, 243, 739
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 316
Eco147I AGGCCT 1 cut(s) 301
Eco24I GRGCYC 2 cut(s) 186, 930
Eco31I GGTCTC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 823
Eco88I CYCGRG 1 cut(s) 430
Eco91I GGTNACC 1 cut(s) 425
EcoO109I RGGNCCY 1 cut(s) 823
EcoO65I GGTNACC 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 130, 847, 997
EcoT14I CCWWGG 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 186, 930
ErhI CCWWGG 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 106, 217, 792
FokI GGATG 3 cut(s) 641, 701, 865
FriOI GRGCYC 2 cut(s) 186, 930
Fsp4HI GCNGC 3 cut(s) 106, 217, 792
FspBI CTAG 1 cut(s) 731
GluI GCNGC 3 cut(s) 106, 217, 792
HaeIII GGCC 3 cut(s) 228, 301, 564
HapII CCGG 3 cut(s) 229, 431, 662
HinfI GANTC 6 cut(s) 84, 168, 173, 710, 940, 948
HpaII CCGG 3 cut(s) 229, 431, 662
HphI GGTGA 4 cut(s) 106, 662, 719, 1013
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 410
Hpy8I GTNNAC 1 cut(s) 261
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 4 cut(s) 416, 766, 770, 819
HpyCH4III ACNGT 2 cut(s) 311, 640
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 7 cut(s) 108, 219, 452, 484, 856, 923, 959
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 349, 925
HpyF3I CTNAG 6 cut(s) 507, 532, 537, 571, 693, 942
HpySE526I ACGT 1 cut(s) 579
Kzo9I GATC 3 cut(s) 40, 243, 739
LmnI GCTCC 2 cut(s) 208, 837
Lsp1109I GCAGC 3 cut(s) 92, 203, 778
LweI GCATC 1 cut(s) 843
MabI ACCWGGT 1 cut(s) 997
MaeI CTAG 1 cut(s) 731
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 3 cut(s) 323, 425, 445
MalI GATC 3 cut(s) 42, 245, 741
MboI GATC 3 cut(s) 40, 243, 739
MboII GAAGA 1 cut(s) 779
MhlI GDGCHC 2 cut(s) 186, 930
MlsI TGGCCA 1 cut(s) 564
MluCI AATT 1 cut(s) 871
MluNI TGGCCA 1 cut(s) 564
MlyI GAGTC 4 cut(s) 93, 167, 719, 934
MmeI TCCRAC 3 cut(s) 120, 706, 1018
MnlI CCTC 8 cut(s) 98, 127, 312, 412, 690, 693, 715, 893
Mox20I TGGCCA 1 cut(s) 564
MscI TGGCCA 1 cut(s) 564
MseI TTAA 2 cut(s) 666, 828
MslI CAYNNNNRTG 3 cut(s) 408, 479, 747
Msp20I TGGCCA 1 cut(s) 564
MspI CCGG 3 cut(s) 229, 431, 662
MspR9I CCNGG 6 cut(s) 132, 230, 431, 432, 849, 999
MvaI CCWGG 3 cut(s) 132, 849, 999
MwoI GCNNNNNNNGC 3 cut(s) 225, 349, 925
NciI CCSGG 3 cut(s) 230, 431, 432
NcoI CCATGG 1 cut(s) 316
NdeII GATC 3 cut(s) 40, 243, 739
NlaIV GGNNCC 4 cut(s) 76, 204, 673, 824
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 2 cut(s) 791, 923
PaeI GCATGC 1 cut(s) 923
PagI TCATGA 1 cut(s) 409
PasI CCCWGGG 1 cut(s) 848
PceI AGGCCT 1 cut(s) 301
PfeI GAWTC 2 cut(s) 168, 948
PkrI GCNGC 3 cut(s) 107, 218, 793
PleI GAGTC 4 cut(s) 92, 167, 718, 934
PpsI GAGTC 4 cut(s) 92, 167, 718, 934
PpuMI RGGWCCY 1 cut(s) 823
PsiI TTATAA 1 cut(s) 912
Psp5II RGGWCCY 1 cut(s) 823
Psp6I CCWGG 3 cut(s) 130, 847, 997
PspEI GGTNACC 1 cut(s) 425
PspGI CCWGG 3 cut(s) 130, 847, 997
PspN4I GGNNCC 4 cut(s) 76, 204, 673, 824
PspPI GGNCC 2 cut(s) 226, 823
PspPPI RGGWCCY 1 cut(s) 823
PstNI CAGNNNCTG 1 cut(s) 506
RsaI GTAC 2 cut(s) 582, 737
RsaNI GTAC 2 cut(s) 581, 736
RseI CAYNNNNRTG 3 cut(s) 408, 479, 747
SaqAI TTAA 2 cut(s) 666, 828
SatI GCNGC 3 cut(s) 106, 217, 792
Sau3AI GATC 3 cut(s) 40, 243, 739
Sau96I GGNCC 2 cut(s) 226, 823
SchI GAGTC 4 cut(s) 93, 167, 719, 934
ScrFI CCNGG 6 cut(s) 132, 230, 431, 432, 849, 999
SduI GDGCHC 2 cut(s) 186, 930
SexAI ACCWGGT 1 cut(s) 997
SfaNI GCATC 1 cut(s) 843
SinI GGWCC 1 cut(s) 823
SmaI CCCGGG 1 cut(s) 432
SmiMI CAYNNNNRTG 3 cut(s) 408, 479, 747
SmlI CTYRAG 1 cut(s) 817
SmoI CTYRAG 1 cut(s) 817
SphI GCATGC 1 cut(s) 923
Sse9I AATT 1 cut(s) 871
SseBI AGGCCT 1 cut(s) 301
SspMI CTAG 1 cut(s) 731
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 6 cut(s) 130, 228, 429, 430, 847, 997
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 311, 640
TaiI ACGT 1 cut(s) 582
TaqI TCGA 3 cut(s) 171, 489, 879
TasI AATT 1 cut(s) 871
TfiI GAWTC 2 cut(s) 168, 948
Tru1I TTAA 2 cut(s) 666, 828
Tru9I TTAA 2 cut(s) 666, 828
TscAI CASTG 3 cut(s) 507, 694, 871
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 3 cut(s) 105, 216, 791
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 645
TspGWI ACGGA 1 cut(s) 156
TspMI CCCGGG 1 cut(s) 430
TspRI CASTG 3 cut(s) 507, 694, 871
VpaK11BI GGWCC 1 cut(s) 823
XceI RCATGY 2 cut(s) 791, 923
XmaI CCCGGG 1 cut(s) 430
XspI CTAG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.