Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8199974.1

Orthogroup ID

OG0011418

Physical Location & Seq

Genomic Coordinates Forward (+)

121 .. 687

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8199974.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgcaactcgacatggaagcagtgcctgagaacaagcctacccctatcagcttagctcagcacacttactggaacttggctggccataactcaggcgacgtacttgaccacagagttcaaatatgggctaaccacattacccctgtggatgaaaacactgttcccacaggtgaaatcatgccagttaaaggcaccccctttgatttcactgccgagaggagggttggtgagtccattcatgaggttggactagggtacgatcacaactatgtgcttgattgtggggaagagaaggaaggtttgaaacatgctgctaaagtgagagacccttccagttcaagggtccttaacctatggagcaatgcccctgggatgcagttttacactgggaattatgtcgattgtgttcaaggtaaaggaggtgctgtttataataagcatgcagggctctgcttggagactcagggattcccaaatgcaatcaacactccaaacttcccatctgttgttgtccaacctggtgagaagtatagaaacaccatgttgtttgagttttcagttgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

188

Amino Acids

20.84

Weight (kDa)

5.3

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17940
fragaria_vesca	FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica	MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica	Prupe.5G234200_v2.0.a1
pyrus_communis	pycom06g20410 pycom14g19790
rosa_chinensis	RchiOBHm_Chr7g0178251
rosa_laevigata	RLG00000005459
rosa_multiflora	Rmu_co8199974.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275040
rosa_rugosa	Rorug06G0415500 Rorug06G0415600
rosa_samantha	Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana	Rw7G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	82
AfaI	GTAC	2 cut(s)	102, 257
AfiI	CCNNNNNNNGG	3 cut(s)	188, 219, 339
AgsI	TTSAA	4 cut(s)	119, 304, 339, 410
AjnI	CCWGG	2 cut(s)	367, 517
AluBI	AGCT	2 cut(s)	51, 56
AluI	AGCT	2 cut(s)	51, 56
Alw26I	GTCTC	2 cut(s)	318, 452
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	3 cut(s)	182, 239, 533
AvaII	GGWCC	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	508
BciT130I	CCWGG	2 cut(s)	369, 519
BcoDI	GTCTC	2 cut(s)	318, 452
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	312
BlpI	GCTNAGC	2 cut(s)	52, 57
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	369, 519
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	193, 344
BmrFI	CCNGG	2 cut(s)	369, 519
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	396
Bpu1102I	GCTNAGC	2 cut(s)	52, 57
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	367, 368
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 241, 411, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 219, 339
Bse1I	ACTGG	4 cut(s)	74, 182, 333, 391
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	369, 519
BseDI	CCNNGG	2 cut(s)	367, 368
BseGI	GGATG	2 cut(s)	154, 378
BseLI	CCNNNNNNNGG	3 cut(s)	188, 219, 339
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	4 cut(s)	18, 71, 105, 476
BseNI	ACTGG	4 cut(s)	74, 182, 333, 391
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	188, 219, 339
BsmAI	GTCTC	2 cut(s)	318, 452
BsnI	GGCC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	259
Bsp1720I	GCTNAGC	2 cut(s)	52, 57
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	4 cut(s)	19, 70, 104, 475
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	193, 344
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	4 cut(s)	74, 182, 333, 391
BssECI	CCNNGG	2 cut(s)	367, 368
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	2 cut(s)	369, 519
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	82, 441
BstDEI	CTNAG	5 cut(s)	27, 52, 57, 91, 462
BstF5I	GGATG	2 cut(s)	154, 378
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	2 cut(s)	318, 452
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNI	CCWGG	2 cut(s)	369, 519
BstNSI	RCATGY	2 cut(s)	311, 443
BstSCI	CCNGG	2 cut(s)	367, 517
BstV1I	GCAGC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	154, 378
BtsI	GCAGTG	2 cut(s)	27, 207
BtsIMutI	CAGTG	4 cut(s)	27, 156, 207, 384
Cac8I	GCNNGC	2 cut(s)	82, 441
CaiI	CAGNNNCTG	1 cut(s)	26
CciI	TCATGA	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	343
CsiI	ACCWGGT	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	101, 256
CviAII	CATG	6 cut(s)	13, 178, 239, 308, 440, 541
CviJI	RGCY	7 cut(s)	37, 51, 56, 80, 84, 128, 448
CviKI_1	RGCY	7 cut(s)	37, 51, 56, 80, 84, 128, 448
CviQI	GTAC	2 cut(s)	101, 256
DdeI	CTNAG	5 cut(s)	27, 52, 57, 91, 462
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	2 cut(s)	367, 517
EcoT38I	GRGCYC	1 cut(s)	450
FaeI	CATG	6 cut(s)	16, 181, 242, 311, 443, 544
FatI	CATG	6 cut(s)	12, 177, 238, 307, 439, 540
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	2 cut(s)	161, 385
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	84
Hin1II	CATG	6 cut(s)	16, 181, 242, 311, 443, 544
HinfI	GANTC	3 cut(s)	230, 460, 468
HphI	GGTGA	3 cut(s)	182, 239, 533
Hpy188III	TCNNGA	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	286, 290, 339
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	4, 376, 443, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	5 cut(s)	27, 52, 57, 91, 462
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	6 cut(s)	16, 181, 242, 311, 443, 544
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	357
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	363
MabI	ACCWGGT	1 cut(s)	517
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	99
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	1 cut(s)	391
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	239, 454
MmeI	TCCRAC	2 cut(s)	226, 538
MnlI	CCTC	4 cut(s)	210, 213, 235, 413
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	2 cut(s)	186, 348
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	369, 519
MvaI	CCWGG	2 cut(s)	369, 519
MwoI	GCNNNNNNNGC	1 cut(s)	445
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	6 cut(s)	16, 181, 242, 311, 443, 544
NlaIV	GGNNCC	2 cut(s)	193, 344
NmeAIII	GCCGAG	1 cut(s)	238
NspI	RCATGY	2 cut(s)	311, 443
PaeI	GCATGC	1 cut(s)	443
PagI	TCATGA	1 cut(s)	238
PasI	CCCWGGG	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	468
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	2 cut(s)	238, 454
PpsI	GAGTC	2 cut(s)	238, 454
PpuMI	RGGWCCY	1 cut(s)	343
PsiI	TTATAA	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	2 cut(s)	367, 517
PspGI	CCWGG	2 cut(s)	367, 517
PspN4I	GGNNCC	2 cut(s)	193, 344
PspPI	GGNCC	1 cut(s)	343
PspPPI	RGGWCCY	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	102, 257
RsaNI	GTAC	2 cut(s)	101, 256
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	186, 348
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	2 cut(s)	239, 454
ScrFI	CCNGG	2 cut(s)	369, 519
SduI	GDGCHC	1 cut(s)	450
SexAI	ACCWGGT	1 cut(s)	517
SfaNI	GCATC	1 cut(s)	363
SinI	GGWCC	1 cut(s)	343
SmiMI	CAYNNNNRTG	1 cut(s)	267
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	367, 517
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	9, 399
TasI	AATT	1 cut(s)	391
TfiI	GAWTC	1 cut(s)	468
Tru1I	TTAA	2 cut(s)	186, 348
Tru9I	TTAA	2 cut(s)	186, 348
TscAI	CASTG	4 cut(s)	27, 163, 214, 391
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	165, 227
TspRI	CASTG	4 cut(s)	27, 163, 214, 391
VpaK11BI	GGWCC	1 cut(s)	343
XceI	RCATGY	2 cut(s)	311, 443
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.