Rorug06G0415500

Converts alpha-aldose to the beta-anomer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011418
Physical Location & Seq
Forward (+)
55525030 .. 55526002
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0415500.1

Sequence Viewer

Length: 228 bp
ATGGAATTCACTAGGAATCTATCACAGATACTTAGATTTCCGGAGGAGATTGAAAAACAAAAGGCTCATGAGCGATACATGAGGTTGCAGGAGCAGGGAAAAACTGAACAAGCAAAGAAAGATTTAGATTGCTTCTTGCTTATTGCTTTGGAGATCTACTACCATGTCAGAAGCATCTGCTGCTGCATCTGGATCTGCACCAAGTGGCAGAGCAACCAAGAGTTTTGA

Protein Analysis

75

Amino Acids

9.2

Weight (kDa)

6.71

Isoelectric Point (pI)

79.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP28 PF10252 15 - 44 1.3e-11 Casein kinase substrate phosphoprotein PP28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17940
fragaria_vesca FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica Prupe.5G234200_v2.0.a1
pyrus_communis pycom06g20410 pycom14g19790
rosa_chinensis RchiOBHm_Chr7g0178251
rosa_laevigata RLG00000005459
rosa_multiflora Rmu_co8199974.1_g000001
rosa_roxburghii Rroxscaffold_3G00275040
rosa_rugosa Rorug06G0415500 Rorug06G0415600
rosa_samantha Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana Rw7G001140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 40
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 204
AgsI TTSAA 1 cut(s) 53
AlwI GGATC 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 180, 183
ApoI RAATTY 1 cut(s) 5
BbvI GCAGC 2 cut(s) 167, 170
BfaI CTAG 1 cut(s) 12
BglII AGATCT 1 cut(s) 153
BisI GCNGC 2 cut(s) 181, 184
BlsI GCNGC 2 cut(s) 182, 185
BmsI GCATC 2 cut(s) 183, 195
BsaWI WCCGGW 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 167, 170
BsgI GTGCAG 1 cut(s) 181
BsiSI CCGG 1 cut(s) 41
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 2 cut(s) 153, 192
BspEI TCCGGA 1 cut(s) 40
BspHI TCATGA 1 cut(s) 67
BspPI GGATC 1 cut(s) 200
BssMI GATC 2 cut(s) 153, 192
BstAPI GCANNNNNTGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 32
BstKTI GATC 2 cut(s) 156, 195
BstMBI GATC 2 cut(s) 153, 192
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 167, 170
BstX2I RGATCY 2 cut(s) 153, 192
BstYI RGATCY 2 cut(s) 153, 192
CciI TCATGA 1 cut(s) 67
CviAII CATG 3 cut(s) 68, 79, 164
CviJI RGCY 1 cut(s) 65
CviKI_1 RGCY 1 cut(s) 65
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 155, 194
DpnII GATC 2 cut(s) 153, 192
DraIII CACNNNGTG 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 5
FaeI CATG 3 cut(s) 71, 82, 167
FaiI YATR 3 cut(s) 69, 80, 165
FatI CATG 3 cut(s) 67, 78, 163
Fnu4HI GCNGC 2 cut(s) 181, 184
Fsp4HI GCNGC 2 cut(s) 181, 184
FspBI CTAG 1 cut(s) 12
GluI GCNGC 2 cut(s) 181, 184
HapII CCGG 1 cut(s) 41
Hin1II CATG 3 cut(s) 71, 82, 167
HinfI GANTC 1 cut(s) 16
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 3 cut(s) 41, 68, 190
HpyCH4V TGCA 3 cut(s) 88, 186, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 3 cut(s) 71, 82, 167
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 2 cut(s) 153, 192
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 54, 74, 80, 175
Lsp1109I GCAGC 2 cut(s) 167, 170
LweI GCATC 2 cut(s) 183, 195
MaeI CTAG 1 cut(s) 12
MalI GATC 2 cut(s) 155, 194
MboI GATC 2 cut(s) 153, 192
MflI RGATCY 2 cut(s) 153, 192
MluCI AATT 1 cut(s) 5
MnlI CCTC 2 cut(s) 37, 75
MroI TCCGGA 1 cut(s) 40
MspI CCGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 2 cut(s) 153, 192
NlaIII CATG 3 cut(s) 71, 82, 167
PagI TCATGA 1 cut(s) 67
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 182, 185
PsuI RGATCY 2 cut(s) 153, 192
SatI GCNGC 2 cut(s) 181, 184
Sau3AI GATC 2 cut(s) 153, 192
SetI ASST 1 cut(s) 86
SfaNI GCATC 2 cut(s) 183, 195
Sse9I AATT 1 cut(s) 5
SspMI CTAG 1 cut(s) 12
TasI AATT 1 cut(s) 5
TfiI GAWTC 1 cut(s) 16
TseI GCWGC 2 cut(s) 180, 183
XapI RAATTY 1 cut(s) 5
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.