Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011418

Physical Location & Seq

Genomic Coordinates Forward (+)

1065739 .. 1068170

Gene Structure 2432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG013900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTGCTGATGTTTTGGATTCGATTGTGGGTTTTTGAAGGAAACTCGGCTGATGTTGTCCTTGGATTCGACTCTGTTGAGCCCTATTTGAAAGGGCTGGCTCCTTATTTTGGCTGCATTGTGGGCCGGGTCGCCAATAGGATCAAAGATGGCAAGTTTACACTCAATGGAACTGACTACTCTGTGTCTCTCAACAGGCCTCCAAACAGTCTCCATGGTGGTAACAAGGGTTATGACAAGCAGATATGGCAGGTAGCCGAACATAAGAAAGGCGATAAGCCGTCCATTACTTTCAAATATCATAGTCATGATGGGGAGGAAGGTTACCCGGGGAGTGTTTCTGTGACTGCAACTTATACACTTACTTCAAGCACTGCTATGCAACTCGACATGGAAGCAGTGCCTGAGAACAAGCCTACCCCTATCAGCTTAGCTCAGCACACTTACTGGAACTTGGCTGGCCATAACTCAGGCGATGTACTTGACCACAGAGTTCAAATATGGGCTAACCACATTACCCCTGTGGATGAAAACACAGTTCCCACAGGTGAAATCATGCCAGTTAAAGGCACCCCCTTTGATTTCACTGCTGAGAGGAGGGTCGGTGAGTCCATTCATGAGGTTGGACTAGGGTACGATCACAACTATGTGCTTGATTGTGGGGAAGAGAAGGAAGGTTTGAAACATGCTGCTAAAGTGAGAGACCCTTCCAGCTCAAGGGTCCTTAACCTATGGAGCAATGCCCCTGGGATGCAGTTTTACACTGGGAATTATGTTGATTGTGTTCAAGGTAAAGGAGGTGCTGTTTATAATAAGCATGCAGGGCTCTGCTTGGAGACTCAGGGATTCCCAAATGCAATCAACACTCCAAACTTCCCATCTGTTGTTGTCCAACCTGGTGAGAAGTATAGAAACACCATGTTGTTCGAGTTTTCAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

314

Amino Acids

34.77

Weight (kDa)

5.84

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	10 - 309	3.1e-86	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17940
fragaria_vesca	FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica	MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica	Prupe.5G234200_v2.0.a1
pyrus_communis	pycom06g20410 pycom14g19790
rosa_chinensis	RchiOBHm_Chr7g0178251
rosa_laevigata	RLG00000005459
rosa_multiflora	Rmu_co8199974.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275040
rosa_rugosa	Rorug06G0415500 Rorug06G0415600
rosa_samantha	Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana	Rw7G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
Acc36I	ACCTGC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	460
AfaI	GTAC	2 cut(s)	480, 635
AfiI	CCNNNNNNNGG	3 cut(s)	110, 566, 717
AgsI	TTSAA	7 cut(s)	38, 91, 295, 369, 497, 682, 788
AjnI	CCWGG	2 cut(s)	745, 895
AluBI	AGCT	3 cut(s)	429, 434, 714
AluI	AGCT	3 cut(s)	429, 434, 714
Alw26I	GTCTC	4 cut(s)	192, 215, 696, 830
AlwI	GGATC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	328
AoxI	GGCC	3 cut(s)	124, 197, 460
ApeKI	GCWGC	2 cut(s)	114, 689
AspS9I	GGNCC	2 cut(s)	124, 721
AsuC2I	CCSGG	3 cut(s)	128, 329, 330
AsuHPI	GGTGA	3 cut(s)	560, 617, 911
AvaI	CYCGRG	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	721
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	2 cut(s)	84, 828
BbvI	GCAGC	2 cut(s)	101, 676
BccI	CCATC	3 cut(s)	143, 305, 886
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	2 cut(s)	747, 897
BcnI	CCSGG	3 cut(s)	128, 329, 330
BcoDI	GTCTC	4 cut(s)	192, 215, 696, 830
BfaI	CTAG	1 cut(s)	629
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	115, 690
BlpI	GCTNAGC	2 cut(s)	430, 435
BlsI	GCNGC	2 cut(s)	116, 691
Bme1390I	CCNGG	5 cut(s)	128, 329, 330, 747, 897
Bme18I	GGWCC	1 cut(s)	721
BmeT110I	CYCGRG	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	124, 721
BmiI	GGNNCC	3 cut(s)	102, 571, 722
BmrFI	CCNGG	5 cut(s)	128, 329, 330, 747, 897
BmrI	ACTGGG	1 cut(s)	774
BmsI	GCATC	1 cut(s)	741
BmuI	ACTGGG	1 cut(s)	774
Bpu1102I	GCTNAGC	2 cut(s)	430, 435
BpuEI	CTTGAG	1 cut(s)	700
BpuMI	CCSGG	3 cut(s)	128, 329, 330
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	6 cut(s)	61, 214, 328, 329, 745, 746
BsaXI	ACNNNNNCTCC	4 cut(s)	589, 619, 789, 819
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 566, 717
Bse1I	ACTGG	3 cut(s)	452, 560, 769
Bse3DI	GCAATG	1 cut(s)	745
BseBI	CCWGG	2 cut(s)	747, 897
BseDI	CCNNGG	6 cut(s)	61, 214, 328, 329, 745, 746
BseGI	GGATG	2 cut(s)	532, 756
BseLI	CCNNNNNNNGG	3 cut(s)	110, 566, 717
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	5 cut(s)	396, 449, 483, 582, 854
BseNI	ACTGG	3 cut(s)	452, 560, 769
BseRI	GAGGAG	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	101, 676
BshFI	GGCC	3 cut(s)	126, 199, 462
BshNI	GGYRCC	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	127, 329
BslI	CCNNNNNNNGG	3 cut(s)	110, 566, 717
BsmAI	GTCTC	4 cut(s)	192, 215, 696, 830
BsnI	GGCC	3 cut(s)	126, 199, 462
Bso31I	GGTCTC	1 cut(s)	696
BsoBI	CYCGRG	1 cut(s)	328
Bsp1286I	GDGCHC	2 cut(s)	84, 828
Bsp143I	GATC	2 cut(s)	141, 637
Bsp1720I	GCTNAGC	2 cut(s)	430, 435
Bsp19I	CCATGG	1 cut(s)	214
BspANI	GGCC	3 cut(s)	126, 199, 462
BspCNI	CTCAG	5 cut(s)	397, 448, 482, 583, 853
BspHI	TCATGA	2 cut(s)	307, 616
BspLI	GGNNCC	3 cut(s)	102, 571, 722
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	696
BsrDI	GCAATG	1 cut(s)	745
BsrI	ACTGG	3 cut(s)	452, 560, 769
BssECI	CCNNGG	6 cut(s)	61, 214, 328, 329, 745, 746
BssMI	GATC	2 cut(s)	141, 637
BssT1I	CCWWGG	2 cut(s)	61, 214
Bst2UI	CCWGG	2 cut(s)	747, 897
Bst4CI	ACNGT	2 cut(s)	209, 538
Bst6I	CTCTTC	1 cut(s)	660
BstC8I	GCNNGC	3 cut(s)	99, 460, 819
BstDEI	CTNAG	6 cut(s)	405, 430, 435, 469, 591, 840
BstDSI	CCRYGG	1 cut(s)	214
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	532, 756
BstKTI	GATC	2 cut(s)	144, 640
BstMAI	GTCTC	4 cut(s)	192, 215, 696, 830
BstMBI	GATC	2 cut(s)	141, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 247, 823
BstNI	CCWGG	2 cut(s)	747, 897
BstNSI	RCATGY	2 cut(s)	689, 821
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	5 cut(s)	126, 327, 328, 745, 895
BstV1I	GCAGC	2 cut(s)	101, 676
BsuRI	GGCC	3 cut(s)	126, 199, 462
BtgI	CCRYGG	1 cut(s)	214
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	532, 756
BtsI	GCAGTG	3 cut(s)	372, 405, 585
BtsIMutI	CAGTG	4 cut(s)	372, 405, 585, 762
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	3 cut(s)	99, 460, 819
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	2 cut(s)	307, 616
Cfr13I	GGNCC	2 cut(s)	124, 721
Cfr9I	CCCGGG	1 cut(s)	328
CsiI	ACCWGGT	1 cut(s)	895
Csp6I	GTAC	2 cut(s)	479, 634
CviAII	CATG	8 cut(s)	215, 308, 391, 556, 617, 686, 818, 919
CviQI	GTAC	2 cut(s)	479, 634
DdeI	CTNAG	6 cut(s)	405, 430, 435, 469, 591, 840
DpnI	GATC	2 cut(s)	143, 639
DpnII	GATC	2 cut(s)	141, 637
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Eco130I	CCWWGG	2 cut(s)	61, 214
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	2 cut(s)	84, 828
Eco31I	GGTCTC	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	721
Eco88I	CYCGRG	1 cut(s)	328
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	721
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	745, 895
EcoT14I	CCWWGG	2 cut(s)	61, 214
EcoT38I	GRGCYC	2 cut(s)	84, 828
ErhI	CCWWGG	2 cut(s)	61, 214
FaeI	CATG	8 cut(s)	218, 311, 394, 559, 620, 689, 821, 922
FatI	CATG	8 cut(s)	214, 307, 390, 555, 616, 685, 817, 918
Fnu4HI	GCNGC	2 cut(s)	115, 690
FokI	GGATG	2 cut(s)	539, 763
FriOI	GRGCYC	2 cut(s)	84, 828
Fsp4HI	GCNGC	2 cut(s)	115, 690
FspBI	CTAG	1 cut(s)	629
GluI	GCNGC	2 cut(s)	115, 690
HaeIII	GGCC	3 cut(s)	126, 199, 462
HapII	CCGG	2 cut(s)	127, 329
Hin1II	CATG	8 cut(s)	218, 311, 394, 559, 620, 689, 821, 922
HinfI	GANTC	6 cut(s)	19, 66, 71, 608, 838, 846
HpaII	CCGG	2 cut(s)	127, 329
HphI	GGTGA	3 cut(s)	560, 617, 911
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188III	TCNNGA	2 cut(s)	308, 617
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	5 cut(s)	32, 314, 664, 668, 717
HpyCH4III	ACNGT	2 cut(s)	209, 538
HpyCH4V	TGCA	6 cut(s)	117, 350, 382, 754, 821, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 247, 823
HpyF3I	CTNAG	6 cut(s)	405, 430, 435, 469, 591, 840
Hsp92II	CATG	8 cut(s)	218, 311, 394, 559, 620, 689, 821, 922
Kzo9I	GATC	2 cut(s)	141, 637
LmnI	GCTCC	2 cut(s)	106, 735
Lsp1109I	GCAGC	2 cut(s)	101, 676
LweI	GCATC	1 cut(s)	741
MabI	ACCWGGT	1 cut(s)	895
MaeI	CTAG	1 cut(s)	629
MaeIII	GTNAC	3 cut(s)	221, 323, 343
MalI	GATC	2 cut(s)	143, 639
MboI	GATC	2 cut(s)	141, 637
MboII	GAAGA	1 cut(s)	677
MhlI	GDGCHC	2 cut(s)	84, 828
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	1 cut(s)	769
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	3 cut(s)	65, 617, 832
MmeI	TCCRAC	2 cut(s)	604, 916
MnlI	CCTC	6 cut(s)	210, 310, 588, 591, 613, 791
Mox20I	TGGCCA	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	2 cut(s)	564, 726
MslI	CAYNNNNRTG	3 cut(s)	306, 377, 645
Msp20I	TGGCCA	1 cut(s)	462
MspI	CCGG	2 cut(s)	127, 329
MspR9I	CCNGG	5 cut(s)	128, 329, 330, 747, 897
MvaI	CCWGG	2 cut(s)	747, 897
MwoI	GCNNNNNNNGC	3 cut(s)	123, 247, 823
NciI	CCSGG	3 cut(s)	128, 329, 330
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	2 cut(s)	141, 637
NlaIII	CATG	8 cut(s)	218, 311, 394, 559, 620, 689, 821, 922
NlaIV	GGNNCC	3 cut(s)	102, 571, 722
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	2 cut(s)	689, 821
PaeI	GCATGC	1 cut(s)	821
PagI	TCATGA	2 cut(s)	307, 616
PasI	CCCWGGG	1 cut(s)	746
PceI	AGGCCT	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	19, 66, 846
PkrI	GCNGC	2 cut(s)	116, 691
PleI	GAGTC	3 cut(s)	65, 616, 832
PpsI	GAGTC	3 cut(s)	65, 616, 832
PpuMI	RGGWCCY	1 cut(s)	721
PsiI	TTATAA	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	721
Psp6I	CCWGG	2 cut(s)	745, 895
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	745, 895
PspN4I	GGNNCC	3 cut(s)	102, 571, 722
PspPI	GGNCC	2 cut(s)	124, 721
PspPPI	RGGWCCY	1 cut(s)	721
PstNI	CAGNNNCTG	1 cut(s)	404
RsaI	GTAC	2 cut(s)	480, 635
RsaNI	GTAC	2 cut(s)	479, 634
RseI	CAYNNNNRTG	3 cut(s)	306, 377, 645
SaqAI	TTAA	2 cut(s)	564, 726
SatI	GCNGC	2 cut(s)	115, 690
Sau3AI	GATC	2 cut(s)	141, 637
Sau96I	GGNCC	2 cut(s)	124, 721
SchI	GAGTC	3 cut(s)	65, 617, 832
ScrFI	CCNGG	5 cut(s)	128, 329, 330, 747, 897
SduI	GDGCHC	2 cut(s)	84, 828
SexAI	ACCWGGT	1 cut(s)	895
SfaNI	GCATC	1 cut(s)	741
SinI	GGWCC	1 cut(s)	721
SmaI	CCCGGG	1 cut(s)	330
SmiMI	CAYNNNNRTG	3 cut(s)	306, 377, 645
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
SphI	GCATGC	1 cut(s)	821
Sse9I	AATT	1 cut(s)	769
SseBI	AGGCCT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	629
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	5 cut(s)	126, 327, 328, 745, 895
StyI	CCWWGG	2 cut(s)	61, 214
TaaI	ACNGT	2 cut(s)	209, 538
TaqI	TCGA	4 cut(s)	22, 69, 387, 927
TasI	AATT	1 cut(s)	769
TatI	WGTACW	1 cut(s)	478
TfiI	GAWTC	3 cut(s)	19, 66, 846
Tru1I	TTAA	2 cut(s)	564, 726
Tru9I	TTAA	2 cut(s)	564, 726
TscAI	CASTG	4 cut(s)	379, 405, 592, 769
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	114, 689
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	543, 605
TspMI	CCCGGG	1 cut(s)	328
TspRI	CASTG	4 cut(s)	379, 405, 592, 769
VpaK11BI	GGWCC	1 cut(s)	721
XceI	RCATGY	2 cut(s)	689, 821
XmaI	CCCGGG	1 cut(s)	328
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.