Rh7AG014600

Converts alpha-aldose to the beta-anomer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011418
Physical Location & Seq
Forward (+)
945299 .. 947161
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG014600.1

Sequence Viewer

Length: 1101 bp
ATGACGTCACCATTCCGTTTAAAACTAAAGCTGCACACGTATATAATCCAATCCATGCCAATAGAAACAGAAAGAGAAACAGAAAGCATGGCAGATCAGAAAGCAGAAATCTTTGAACTCAACAATGGCACCATGCGAGTCCTCATCTCCAACCTGGGCTGCACCATCACCTCCTTGTCTGTTCCTGGCAAAGACGGAAAATCGGCTGATGTTGTCCTTGGATTCGACTCTGTTGAGCCCTATTTGAAAGGGCTGGCTCCTTATTTTGGCTGCATTGTGGGCCGGGTCGCCAATAGGATCAAAGATGGCAAGTTTACACTCAATGGAACTGACTACTCTGTGTCTCTCAACAGGCCTCCAAACAGTCTCCATGGTGGTAACAAGGGTTATGACAAGCAGATATGGCAGGTAGCCGAACATAAGAAAGGCGATAAGCCATCCATTACTTTCAAATATCATAGTCATGATGGGGAGGAAGGTTACCCGGGGAGTGTTTCTGTGACTGCAACTTATACACTTACTTCAAGCACTACTATGCAACTCGACATGGAAGCAGTGCCTGAGAACAAGCCTACCCCTATCAGCTTAGCTCAGCACACTTACTGGAACTTGGCTGGCCATAACTCAGGCGACGTACTTGACCACAGAGTTCAAATATGGGCTAACCACATTACCCCTGTGGATGAAAACACAGTTCCCACAGGTGAAATCATGCCAGTTAAAGGCACCCCCTTTGATTTCACTGCTGAGAGGAGGGTTGGTGAGTCCATTCATGAGGTTGGACTAGGGTACGATCACAACTATGTGCTTGATTGTGGGGAAGAGAAGGAAGGTTTGAAACATGCTGCTAAAGTGAGAGACCCTTCCAGCTCAAGGGTCCTTAACCTATGGAGCAATGCCCCTGGGATGCAGTTTTACACTGGGAATTATGTCGATTGTGTTCAAGGTAAAGGAGGTGCTGTTTATAATAAGCATGCAGGGCTCTGCTTGGAGACTCAGGGATTCCCAAATGCAATCAACACTCCAAACTTCCCATCTGTTGTTGTCCAACCTGGTGAGAAGTATAGAAACACCATGTTGTTTGAGTTTTCAGTTGAGTGA

Protein Analysis

366

Amino Acids

40.36

Weight (kDa)

5.92

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 38 - 361 2.4e-95 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17940
fragaria_vesca FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica Prupe.5G234200_v2.0.a1
pyrus_communis pycom06g20410 pycom14g19790
rosa_chinensis RchiOBHm_Chr7g0178251
rosa_laevigata RLG00000005459
rosa_multiflora Rmu_co8199974.1_g000001
rosa_roxburghii Rroxscaffold_3G00275040
rosa_rugosa Rorug06G0415500 Rorug06G0415600
rosa_samantha Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana Rw7G001140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 397
AccB1I GGYRCC 2 cut(s) 128, 725
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 616
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 636, 791
AfiI CCNNNNNNNGG 3 cut(s) 266, 722, 873
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 7 cut(s) 116, 247, 451, 525, 653, 838, 944
AjnI CCWGG 4 cut(s) 153, 184, 901, 1051
AluBI AGCT 4 cut(s) 31, 585, 590, 870
AluI AGCT 4 cut(s) 31, 585, 590, 870
Alw26I GTCTC 4 cut(s) 348, 371, 852, 986
AlwI GGATC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 484
AoxI GGCC 3 cut(s) 280, 353, 616
ApeKI GCWGC 4 cut(s) 31, 159, 270, 845
AspS9I GGNCC 2 cut(s) 280, 877
AsuC2I CCSGG 3 cut(s) 284, 485, 486
AsuHPI GGTGA 4 cut(s) 160, 716, 773, 1067
AvaI CYCGRG 1 cut(s) 484
AvaII GGWCC 1 cut(s) 877
BalI TGGCCA 1 cut(s) 618
BanI GGYRCC 2 cut(s) 128, 725
BanII GRGCYC 2 cut(s) 240, 984
BbvI GCAGC 4 cut(s) 18, 146, 257, 832
BccI CCATC 5 cut(s) 173, 299, 445, 461, 1042
BciT130I CCWGG 4 cut(s) 155, 186, 903, 1053
BcnI CCSGG 3 cut(s) 284, 485, 486
BcoDI GTCTC 4 cut(s) 348, 371, 852, 986
BfaI CTAG 1 cut(s) 785
BfuAI ACCTGC 1 cut(s) 397
BisI GCNGC 4 cut(s) 32, 160, 271, 846
BlpI GCTNAGC 2 cut(s) 586, 591
BlsI GCNGC 4 cut(s) 33, 161, 272, 847
Bme1390I CCNGG 7 cut(s) 155, 186, 284, 485, 486, 903, 1053
Bme18I GGWCC 1 cut(s) 877
BmeT110I CYCGRG 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 280, 877
BmiI GGNNCC 4 cut(s) 130, 258, 727, 878
BmrFI CCNGG 7 cut(s) 155, 186, 284, 485, 486, 903, 1053
BmrI ACTGGG 1 cut(s) 930
BmsI GCATC 1 cut(s) 897
BmuI ACTGGG 1 cut(s) 930
Bpu1102I GCTNAGC 2 cut(s) 586, 591
BpuEI CTTGAG 1 cut(s) 856
BpuMI CCSGG 3 cut(s) 284, 485, 486
BsaAI YACGTR 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 852
BsaJI CCNNGG 7 cut(s) 154, 217, 370, 484, 485, 901, 902
BsaXI ACNNNNNCTCC 4 cut(s) 745, 775, 945, 975
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 722, 873
Bse1I ACTGG 3 cut(s) 608, 716, 925
Bse3DI GCAATG 1 cut(s) 901
BseBI CCWGG 4 cut(s) 155, 186, 903, 1053
BseDI CCNNGG 7 cut(s) 154, 217, 370, 484, 485, 901, 902
BseGI GGATG 3 cut(s) 437, 688, 912
BseLI CCNNNNNNNGG 3 cut(s) 266, 722, 873
BseMI GCAATG 1 cut(s) 901
BseMII CTCAG 5 cut(s) 552, 605, 639, 738, 1010
BseNI ACTGG 3 cut(s) 608, 716, 925
BseRI GAGGAG 1 cut(s) 766
BseXI GCAGC 4 cut(s) 18, 146, 257, 832
BsgI GTGCAG 2 cut(s) 17, 145
BshFI GGCC 3 cut(s) 282, 355, 618
BshNI GGYRCC 2 cut(s) 128, 725
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 2 cut(s) 283, 485
BslI CCNNNNNNNGG 3 cut(s) 266, 722, 873
BsmAI GTCTC 4 cut(s) 348, 371, 852, 986
BsnI GGCC 3 cut(s) 282, 355, 618
Bso31I GGTCTC 1 cut(s) 852
BsoBI CYCGRG 1 cut(s) 484
Bsp1286I GDGCHC 2 cut(s) 240, 984
Bsp143I GATC 3 cut(s) 94, 297, 793
Bsp1720I GCTNAGC 2 cut(s) 586, 591
Bsp19I CCATGG 1 cut(s) 370
BspANI GGCC 3 cut(s) 282, 355, 618
BspCNI CTCAG 5 cut(s) 553, 604, 638, 739, 1009
BspHI TCATGA 2 cut(s) 463, 772
BspLI GGNNCC 4 cut(s) 130, 258, 727, 878
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 2 cut(s) 128, 725
BspTNI GGTCTC 1 cut(s) 852
BsrDI GCAATG 1 cut(s) 901
BsrI ACTGG 3 cut(s) 608, 716, 925
BssECI CCNNGG 7 cut(s) 154, 217, 370, 484, 485, 901, 902
BssMI GATC 3 cut(s) 94, 297, 793
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 217, 370
Bst2UI CCWGG 4 cut(s) 155, 186, 903, 1053
Bst4CI ACNGT 2 cut(s) 365, 694
Bst6I CTCTTC 1 cut(s) 816
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 255, 616, 975
BstDEI CTNAG 6 cut(s) 561, 586, 591, 625, 747, 996
BstDSI CCRYGG 1 cut(s) 370
BstEII GGTNACC 1 cut(s) 479
BstF5I GGATG 3 cut(s) 437, 688, 912
BstKTI GATC 3 cut(s) 97, 300, 796
BstMAI GTCTC 4 cut(s) 348, 371, 852, 986
BstMBI GATC 3 cut(s) 94, 297, 793
BstMWI GCNNNNNNNGC 3 cut(s) 279, 403, 979
BstNI CCWGG 4 cut(s) 155, 186, 903, 1053
BstNSI RCATGY 2 cut(s) 845, 977
BstPI GGTNACC 1 cut(s) 479
BstSCI CCNGG 7 cut(s) 153, 184, 282, 483, 484, 901, 1051
BstV1I GCAGC 4 cut(s) 18, 146, 257, 832
BsuRI GGCC 3 cut(s) 282, 355, 618
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 3 cut(s) 437, 688, 912
BtsI GCAGTG 2 cut(s) 561, 741
BtsIMutI CAGTG 3 cut(s) 561, 741, 918
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 3 cut(s) 255, 616, 975
CaiI CAGNNNCTG 1 cut(s) 560
CciI TCATGA 2 cut(s) 463, 772
Cfr13I GGNCC 2 cut(s) 280, 877
Cfr9I CCCGGG 1 cut(s) 484
CsiI ACCWGGT 1 cut(s) 1051
Csp6I GTAC 2 cut(s) 635, 790
CviQI GTAC 2 cut(s) 635, 790
DdeI CTNAG 6 cut(s) 561, 586, 591, 625, 747, 996
DpnI GATC 3 cut(s) 96, 299, 795
DpnII GATC 3 cut(s) 94, 297, 793
DraI TTTAAA 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
Eco130I CCWWGG 2 cut(s) 217, 370
Eco147I AGGCCT 1 cut(s) 355
Eco24I GRGCYC 2 cut(s) 240, 984
Eco31I GGTCTC 1 cut(s) 852
Eco47I GGWCC 1 cut(s) 877
Eco88I CYCGRG 1 cut(s) 484
Eco91I GGTNACC 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 877
EcoO65I GGTNACC 1 cut(s) 479
EcoRII CCWGG 4 cut(s) 153, 184, 901, 1051
EcoT14I CCWWGG 2 cut(s) 217, 370
EcoT38I GRGCYC 2 cut(s) 240, 984
ErhI CCWWGG 2 cut(s) 217, 370
Fnu4HI GCNGC 4 cut(s) 32, 160, 271, 846
FokI GGATG 3 cut(s) 424, 695, 919
FriOI GRGCYC 2 cut(s) 240, 984
Fsp4HI GCNGC 4 cut(s) 32, 160, 271, 846
FspBI CTAG 1 cut(s) 785
GluI GCNGC 4 cut(s) 32, 160, 271, 846
HaeIII GGCC 3 cut(s) 282, 355, 618
HapII CCGG 2 cut(s) 283, 485
Hin1I GRCGYC 1 cut(s) 5
HinfI GANTC 6 cut(s) 138, 222, 227, 764, 994, 1002
HpaII CCGG 2 cut(s) 283, 485
HphI GGTGA 4 cut(s) 160, 716, 773, 1067
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 464, 773
Hpy8I GTNNAC 1 cut(s) 315
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 4 cut(s) 470, 820, 824, 873
HpyCH4III ACNGT 2 cut(s) 365, 694
HpyCH4IV ACGT 3 cut(s) 5, 38, 633
HpyCH4V TGCA 8 cut(s) 34, 162, 273, 506, 538, 910, 977, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 279, 403, 979
HpyF3I CTNAG 6 cut(s) 561, 586, 591, 625, 747, 996
HpySE526I ACGT 3 cut(s) 5, 38, 633
Hsp92I GRCGYC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 94, 297, 793
LmnI GCTCC 2 cut(s) 262, 891
Lsp1109I GCAGC 4 cut(s) 18, 146, 257, 832
LweI GCATC 1 cut(s) 897
MabI ACCWGGT 1 cut(s) 1051
MaeI CTAG 1 cut(s) 785
MaeII ACGT 3 cut(s) 5, 38, 633
MaeIII GTNAC 4 cut(s) 6, 377, 479, 499
MalI GATC 3 cut(s) 96, 299, 795
MboI GATC 3 cut(s) 94, 297, 793
MboII GAAGA 1 cut(s) 833
MhlI GDGCHC 2 cut(s) 240, 984
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 1 cut(s) 925
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 4 cut(s) 147, 221, 773, 988
MmeI TCCRAC 3 cut(s) 174, 760, 1072
MnlI CCTC 8 cut(s) 152, 181, 366, 466, 744, 747, 769, 947
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 3 cut(s) 20, 720, 882
MslI CAYNNNNRTG 3 cut(s) 462, 533, 801
Msp20I TGGCCA 1 cut(s) 618
MspI CCGG 2 cut(s) 283, 485
MspR9I CCNGG 7 cut(s) 155, 186, 284, 485, 486, 903, 1053
MvaI CCWGG 4 cut(s) 155, 186, 903, 1053
MwoI GCNNNNNNNGC 3 cut(s) 279, 403, 979
NciI CCSGG 3 cut(s) 284, 485, 486
NcoI CCATGG 1 cut(s) 370
NdeII GATC 3 cut(s) 94, 297, 793
NlaIV GGNNCC 4 cut(s) 130, 258, 727, 878
NmuCI GTSAC 2 cut(s) 6, 499
NspI RCATGY 2 cut(s) 845, 977
PaeI GCATGC 1 cut(s) 977
PagI TCATGA 2 cut(s) 463, 772
PasI CCCWGGG 1 cut(s) 902
PceI AGGCCT 1 cut(s) 355
PfeI GAWTC 2 cut(s) 222, 1002
PkrI GCNGC 4 cut(s) 33, 161, 272, 847
PleI GAGTC 4 cut(s) 146, 221, 772, 988
PpsI GAGTC 4 cut(s) 146, 221, 772, 988
Ppu21I YACGTR 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 877
PsiI TTATAA 1 cut(s) 966
Psp5II RGGWCCY 1 cut(s) 877
Psp6I CCWGG 4 cut(s) 153, 184, 901, 1051
PspEI GGTNACC 1 cut(s) 479
PspGI CCWGG 4 cut(s) 153, 184, 901, 1051
PspN4I GGNNCC 4 cut(s) 130, 258, 727, 878
PspPI GGNCC 2 cut(s) 280, 877
PspPPI RGGWCCY 1 cut(s) 877
PstNI CAGNNNCTG 1 cut(s) 560
RsaI GTAC 2 cut(s) 636, 791
RsaNI GTAC 2 cut(s) 635, 790
RseI CAYNNNNRTG 3 cut(s) 462, 533, 801
SaqAI TTAA 3 cut(s) 20, 720, 882
SatI GCNGC 4 cut(s) 32, 160, 271, 846
Sau3AI GATC 3 cut(s) 94, 297, 793
Sau96I GGNCC 2 cut(s) 280, 877
SchI GAGTC 4 cut(s) 147, 221, 773, 988
ScrFI CCNGG 7 cut(s) 155, 186, 284, 485, 486, 903, 1053
SduI GDGCHC 2 cut(s) 240, 984
SexAI ACCWGGT 1 cut(s) 1051
SfaNI GCATC 1 cut(s) 897
SinI GGWCC 1 cut(s) 877
SmaI CCCGGG 1 cut(s) 486
SmiMI CAYNNNNRTG 3 cut(s) 462, 533, 801
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
SphI GCATGC 1 cut(s) 977
Sse9I AATT 1 cut(s) 925
SseBI AGGCCT 1 cut(s) 355
SspMI CTAG 1 cut(s) 785
StuI AGGCCT 1 cut(s) 355
StyD4I CCNGG 7 cut(s) 153, 184, 282, 483, 484, 901, 1051
StyI CCWWGG 2 cut(s) 217, 370
TaaI ACNGT 2 cut(s) 365, 694
TaiI ACGT 3 cut(s) 8, 41, 636
TaqI TCGA 3 cut(s) 225, 543, 933
TasI AATT 1 cut(s) 925
TfiI GAWTC 2 cut(s) 222, 1002
Tru1I TTAA 3 cut(s) 20, 720, 882
Tru9I TTAA 3 cut(s) 20, 720, 882
TscAI CASTG 3 cut(s) 561, 748, 925
TseFI GTSAC 2 cut(s) 6, 499
TseI GCWGC 4 cut(s) 31, 159, 270, 845
Tsp45I GTSAC 2 cut(s) 6, 499
TspDTI ATGAA 2 cut(s) 699, 761
TspGWI ACGGA 2 cut(s) 5, 210
TspMI CCCGGG 1 cut(s) 484
TspRI CASTG 3 cut(s) 561, 748, 925
VpaK11BI GGWCC 1 cut(s) 877
XceI RCATGY 2 cut(s) 845, 977
XmaI CCCGGG 1 cut(s) 484
XspI CTAG 1 cut(s) 785
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.