Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011418

Physical Location & Seq

Genomic Coordinates Reverse (-)

23457598 .. 23459586

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCGGATGCGAACCAGAAACCAGAAATCTTCGAACTAAACAATGGGAGCATGCGCGCCCTCATCACAAACCTCGGCTGCACCATCACCTCCTTGTCTGTTCCCGGCAAAGACGGAAAATTGGCTGATGTTGTTCTTGGATTCGACTCCGTGGATCCCTATGTGAAGGGAGTTGCTCCTTACTTTGGCTCCATTGTGGGTCGGGTTGCTAATAGAATCAAAGATGGGAAGTTTACGCTCAATGGAACGGAGTACTCCTTGCCTGTCAACAGACCTCCAAACAGTCTCCATGGTGGTCACAAGGGGTATGATCAGCAGATATGGGAGGTAGCAGAACTTAAAAAGGGCGATAACCCGTCCATCACTTTTAAGTATCACAGTCAGGACGGTGAGGAAGGTTACCCCGGGAATCTTTCTCTGACTGCAACTTATAGACTTACTTCAAGCACGACAATGAGACTTGACATGGAAGCAGTGCCTGAGAACAAGCCCACCCCAGTCAGTTTAGCTCAGCACACTTACTGGAACTTAGCTGGCCATAACTCGGGCAACATACTTGACCATGCAATTCAAATTTGGGCAAACCATATTACCCCTGTGGATGAAAACACAGTCCCAACAGGTGAAATCAAGCCGGTTAAAGGCACCCCCTTTGATTTCACTACAGAGAAGAGGGTCGGTGAGTCCATCCATGAGGTCGGTTTAGGGTATGACCACAACTATGTGCTCGACTGTGGGGAAGAGAAAGAAGGCCTGAAACATGCTGCGAGAGTGAGGGACCCATCCAGCTCGAGGGTCCTTAACCTATGGAGCAATGCCCCTGGGATGCAGTTTTACACCGCGAATTATGTCAATGGGGTTGTCGGCAAAGGAGGCGCGGTCTATGGAAAGCATTCCGGGCTCTGTTTGGAGACGCAGGGGTTCCCAAATGCAATTAACACACCAAACTTCCCGTCCATTGTTGTTCAACCTGGTGAGAGGTACAGCCACACCATGTTGTTTGAGTTTTCAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

340

Amino Acids

37.04

Weight (kDa)

5.84

Isoelectric Point (pI)

27.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17940
fragaria_vesca	FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica	MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica	Prupe.5G234200_v2.0.a1
pyrus_communis	pycom06g20410 pycom14g19790
rosa_chinensis	RchiOBHm_Chr7g0178251
rosa_laevigata	RLG00000005459
rosa_multiflora	Rmu_co8199974.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275040
rosa_rugosa	Rorug06G0415500 Rorug06G0415600
rosa_samantha	Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana	Rw7G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	644
AccII	CGCG	3 cut(s)	57, 842, 878
AciI	CCGC	3 cut(s)	5, 840, 878
AclWI	GGATC	2 cut(s)	149, 162
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	573
AfaI	GTAC	2 cut(s)	254, 983
AfiI	CCNNNNNNNGG	4 cut(s)	185, 544, 641, 792
AgsI	TTSAA	3 cut(s)	444, 572, 968
AjnI	CCWGG	2 cut(s)	820, 970
AluBI	AGCT	3 cut(s)	509, 533, 789
AluI	AGCT	3 cut(s)	509, 533, 789
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	3 cut(s)	290, 451, 905
AlwI	GGATC	2 cut(s)	149, 162
AlwNI	CAGNNNCTG	1 cut(s)	479
Ama87I	CYCGRG	3 cut(s)	404, 544, 790
AoxI	GGCC	2 cut(s)	535, 751
ApeKI	GCWGC	2 cut(s)	78, 764
ApoI	RAATTY	1 cut(s)	573
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
Asp700I	GAANNNNTTC	1 cut(s)	892
AspLEI	GCGC	3 cut(s)	57, 59, 878
AspS9I	GGNCC	2 cut(s)	778, 796
AsuC2I	CCSGG	4 cut(s)	105, 405, 406, 898
AsuHPI	GGTGA	5 cut(s)	79, 401, 635, 692, 986
AsuII	TTCGAA	1 cut(s)	33
AvaI	CYCGRG	3 cut(s)	404, 544, 790
AvaII	GGWCC	2 cut(s)	778, 796
BalI	TGGCCA	1 cut(s)	537
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	903
Bbv12I	GWGCWC	1 cut(s)	729
BbvI	GCAGC	2 cut(s)	65, 751
BccI	CCATC	5 cut(s)	92, 218, 368, 695, 790
BciT130I	CCWGG	2 cut(s)	822, 972
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	4 cut(s)	105, 405, 406, 898
BcoDI	GTCTC	3 cut(s)	290, 451, 905
BfmI	CTRYAG	1 cut(s)	663
BisI	GCNGC	2 cut(s)	79, 765
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	2 cut(s)	80, 766
BmcAI	AGTACT	1 cut(s)	254
Bme1390I	CCNGG	6 cut(s)	105, 405, 406, 822, 898, 972
Bme18I	GGWCC	2 cut(s)	778, 796
BmeT110I	CYCGRG	3 cut(s)	404, 544, 790
BmgT120I	GGNCC	2 cut(s)	778, 796
BmiI	GGNNCC	7 cut(s)	156, 190, 646, 779, 780, 797, 923
BmrFI	CCNGG	6 cut(s)	105, 405, 406, 822, 898, 972
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	816
BmuI	ACTGGG	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	33
BpuMI	CCSGG	4 cut(s)	105, 405, 406, 898
BsaJI	CCNNGG	7 cut(s)	73, 150, 289, 403, 404, 820, 821
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 864, 894
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 544, 641, 792
Bse118I	RCCGGY	1 cut(s)	634
Bse1I	ACTGG	2 cut(s)	497, 527
Bse3DI	GCAATG	1 cut(s)	820
BseBI	CCWGG	2 cut(s)	822, 972
BseDI	CCNNGG	7 cut(s)	73, 150, 289, 403, 404, 820, 821
BseGI	GGATG	5 cut(s)	13, 607, 687, 782, 831
BseLI	CCNNNNNNNGG	4 cut(s)	185, 544, 641, 792
BseMI	GCAATG	1 cut(s)	820
BseMII	CTCAG	2 cut(s)	471, 524
BseNI	ACTGG	2 cut(s)	497, 527
BsePI	GCGCGC	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	65, 751
BsgI	GTGCAG	1 cut(s)	64
Bsh1236I	CGCG	3 cut(s)	57, 842, 878
BshFI	GGCC	2 cut(s)	537, 753
BshNI	GGYRCC	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	729
BsiHKCI	CYCGRG	3 cut(s)	404, 544, 790
BsiSI	CCGG	4 cut(s)	105, 405, 635, 897
BslFI	GGGAC	2 cut(s)	599, 791
BslI	CCNNNNNNNGG	4 cut(s)	185, 544, 641, 792
BsmAI	GTCTC	3 cut(s)	290, 451, 905
BsmBI	CGTCTC	1 cut(s)	905
BsmFI	GGGAC	2 cut(s)	599, 791
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	2 cut(s)	537, 753
BsoBI	CYCGRG	3 cut(s)	404, 544, 790
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	729, 903
Bsp143I	GATC	2 cut(s)	154, 310
Bsp1720I	GCTNAGC	1 cut(s)	510
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	3 cut(s)	5, 840, 878
BspANI	GGCC	2 cut(s)	537, 753
BspCNI	CTCAG	2 cut(s)	472, 523
BspFNI	CGCG	3 cut(s)	57, 842, 878
BspLI	GGNNCC	7 cut(s)	156, 190, 646, 779, 780, 797, 923
BspPI	GGATC	2 cut(s)	149, 162
BspT104I	TTCGAA	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	820
BsrFI	RCCGGY	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	497, 527
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	7 cut(s)	73, 150, 289, 403, 404, 820, 821
BssHII	GCGCGC	1 cut(s)	55
BssMI	GATC	2 cut(s)	154, 310
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	2 cut(s)	822, 972
Bst4CI	ACNGT	5 cut(s)	284, 380, 389, 613, 734
Bst6I	CTCTTC	2 cut(s)	665, 735
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	53, 57, 535
BstDEI	CTNAG	3 cut(s)	480, 510, 529
BstDSI	CCRYGG	2 cut(s)	150, 289
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	5 cut(s)	13, 607, 687, 782, 831
BstFNI	CGCG	3 cut(s)	57, 842, 878
BstHHI	GCGC	3 cut(s)	57, 59, 878
BstKTI	GATC	2 cut(s)	157, 313
BstMAI	GTCTC	3 cut(s)	290, 451, 905
BstMBI	GATC	2 cut(s)	154, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	873, 898
BstNI	CCWGG	2 cut(s)	822, 972
BstNSI	RCATGY	2 cut(s)	55, 764
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	6 cut(s)	103, 403, 404, 820, 896, 970
BstSFI	CTRYAG	1 cut(s)	663
BstUI	CGCG	3 cut(s)	57, 842, 878
BstV1I	GCAGC	2 cut(s)	65, 751
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	537, 753
BtgI	CCRYGG	2 cut(s)	150, 289
BtsCI	GGATG	5 cut(s)	13, 607, 687, 782, 831
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	3 cut(s)	53, 57, 535
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	3 cut(s)	57, 59, 878
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	2 cut(s)	778, 796
Cfr9I	CCCGGG	1 cut(s)	404
CseI	GACGC	1 cut(s)	922
CsiI	ACCWGGT	1 cut(s)	970
Csp6I	GTAC	2 cut(s)	253, 982
CviAII	CATG	7 cut(s)	52, 290, 466, 563, 692, 761, 994
CviQI	GTAC	2 cut(s)	253, 982
DdeI	CTNAG	3 cut(s)	480, 510, 529
DpnI	GATC	2 cut(s)	156, 312
DpnII	GATC	2 cut(s)	154, 310
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	2 cut(s)	665, 735
EarI	CTCTTC	2 cut(s)	665, 735
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	753
Eco24I	GRGCYC	1 cut(s)	903
Eco47I	GGWCC	2 cut(s)	778, 796
Eco88I	CYCGRG	3 cut(s)	404, 544, 790
Eco91I	GGTNACC	1 cut(s)	398
EcoO109I	RGGNCCY	2 cut(s)	778, 796
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	820, 970
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	905
FaeI	CATG	7 cut(s)	55, 293, 469, 566, 695, 764, 997
FaqI	GGGAC	2 cut(s)	599, 791
FatI	CATG	7 cut(s)	51, 289, 465, 562, 691, 760, 993
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	79, 765
FokI	GGATG	5 cut(s)	20, 614, 674, 769, 838
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	2 cut(s)	79, 765
GlaI	GCGC	3 cut(s)	56, 58, 877
GluI	GCNGC	2 cut(s)	79, 765
HaeIII	GGCC	2 cut(s)	537, 753
HapII	CCGG	4 cut(s)	105, 405, 635, 897
HgaI	GACGC	1 cut(s)	922
HhaI	GCGC	3 cut(s)	57, 59, 878
Hin1II	CATG	7 cut(s)	55, 293, 469, 566, 695, 764, 997
Hin6I	GCGC	3 cut(s)	55, 57, 876
HinP1I	GCGC	3 cut(s)	55, 57, 876
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	5 cut(s)	141, 146, 216, 409, 683
HpaII	CCGG	4 cut(s)	105, 405, 635, 897
HphI	GGTGA	5 cut(s)	79, 401, 635, 692, 986
Hpy166II	GTNNAC	2 cut(s)	234, 268
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	2 cut(s)	234, 268
HpyAV	CCTTC	3 cut(s)	160, 389, 743
HpyCH4III	ACNGT	5 cut(s)	284, 380, 389, 613, 734
HpyCH4V	TGCA	5 cut(s)	81, 425, 566, 829, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	873, 898
HpyF3I	CTNAG	3 cut(s)	480, 510, 529
Hsp92II	CATG	7 cut(s)	55, 293, 469, 566, 695, 764, 997
HspAI	GCGC	3 cut(s)	55, 57, 876
KflI	GGGWCCC	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	154, 310
LmnI	GCTCC	4 cut(s)	48, 181, 194, 810
Lsp1109I	GCAGC	2 cut(s)	65, 751
LweI	GCATC	1 cut(s)	816
MabI	ACCWGGT	1 cut(s)	970
MaeIII	GTNAC	2 cut(s)	296, 398
MalI	GATC	2 cut(s)	156, 312
MboI	GATC	2 cut(s)	154, 310
MboII	GAAGA	3 cut(s)	22, 682, 752
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	729, 903
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	5 cut(s)	119, 567, 573, 844, 933
MluNI	TGGCCA	1 cut(s)	537
MlyI	GAGTC	2 cut(s)	140, 692
Mox20I	TGGCCA	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	892
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	5 cut(s)	339, 369, 639, 801, 936
MslI	CAYNNNNRTG	2 cut(s)	452, 720
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	4 cut(s)	105, 405, 635, 897
MspR9I	CCNGG	6 cut(s)	105, 405, 406, 822, 898, 972
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	2 cut(s)	822, 972
MvnI	CGCG	3 cut(s)	57, 842, 878
MwoI	GCNNNNNNNGC	2 cut(s)	873, 898
NciI	CCSGG	4 cut(s)	105, 405, 406, 898
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	154, 310
NlaIII	CATG	7 cut(s)	55, 293, 469, 566, 695, 764, 997
NlaIV	GGNNCC	7 cut(s)	156, 190, 646, 779, 780, 797, 923
NmeAIII	GCCGAG	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	2 cut(s)	55, 764
NspV	TTCGAA	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	55
PaeR7I	CTCGAG	1 cut(s)	790
PasI	CCCWGGG	1 cut(s)	821
PauI	GCGCGC	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	753
PctI	GAATGC	1 cut(s)	892
PdmI	GAANNNNTTC	1 cut(s)	892
PfeI	GAWTC	3 cut(s)	141, 216, 409
PkrI	GCNGC	2 cut(s)	80, 766
PleI	GAGTC	2 cut(s)	140, 691
PpsI	GAGTC	2 cut(s)	140, 691
PpuMI	RGGWCCY	2 cut(s)	778, 796
Psp5II	RGGWCCY	2 cut(s)	778, 796
Psp6I	CCWGG	2 cut(s)	820, 970
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	2 cut(s)	820, 970
PspN4I	GGNNCC	7 cut(s)	156, 190, 646, 779, 780, 797, 923
PspPI	GGNCC	2 cut(s)	778, 796
PspPPI	RGGWCCY	2 cut(s)	778, 796
PspXI	VCTCGAGB	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	154
PteI	GCGCGC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	254, 983
RsaNI	GTAC	2 cut(s)	253, 982
RseI	CAYNNNNRTG	2 cut(s)	452, 720
SaqAI	TTAA	5 cut(s)	339, 369, 639, 801, 936
SatI	GCNGC	2 cut(s)	79, 765
Sau3AI	GATC	2 cut(s)	154, 310
Sau96I	GGNCC	2 cut(s)	778, 796
ScaI	AGTACT	1 cut(s)	254
SchI	GAGTC	2 cut(s)	140, 692
ScrFI	CCNGG	6 cut(s)	105, 405, 406, 822, 898, 972
SduI	GDGCHC	2 cut(s)	729, 903
SexAI	ACCWGGT	1 cut(s)	970
SfaNI	GCATC	1 cut(s)	816
SfcI	CTRYAG	1 cut(s)	663
Sfr274I	CTCGAG	1 cut(s)	790
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	2 cut(s)	778, 796
SlaI	CTCGAG	1 cut(s)	790
SmaI	CCCGGG	1 cut(s)	406
SmiMI	CAYNNNNRTG	2 cut(s)	452, 720
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
SphI	GCATGC	1 cut(s)	55
Sse9I	AATT	5 cut(s)	119, 567, 573, 844, 933
SseBI	AGGCCT	1 cut(s)	753
SsiI	CCGC	3 cut(s)	5, 840, 878
StuI	AGGCCT	1 cut(s)	753
StyD4I	CCNGG	6 cut(s)	103, 403, 404, 820, 896, 970
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	5 cut(s)	284, 380, 389, 613, 734
TaqI	TCGA	4 cut(s)	33, 144, 729, 791
TasI	AATT	5 cut(s)	119, 567, 573, 844, 933
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	3 cut(s)	141, 216, 409
Tru1I	TTAA	5 cut(s)	339, 369, 639, 801, 936
Tru9I	TTAA	5 cut(s)	339, 369, 639, 801, 936
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	2 cut(s)	78, 764
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	618
TspGWI	ACGGA	3 cut(s)	129, 139, 263
TspMI	CCCGGG	1 cut(s)	404
TspRI	CASTG	1 cut(s)	480
VpaK11BI	GGWCC	2 cut(s)	778, 796
XapI	RAATTY	1 cut(s)	573
XceI	RCATGY	2 cut(s)	55, 764
XhoI	CTCGAG	1 cut(s)	790
XmaI	CCCGGG	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	892
ZrmI	AGTACT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.