Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011418

Physical Location & Seq

Genomic Coordinates Forward (+)

906969 .. 908740

Gene Structure 1772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCAGATCAGAAAGCAGAAATCTTTGAACTCAACAATGGCACCATGCGAGTCCTCATCTCCAACCTGGGCTGCACCATCACCTCCCTGTCTGTTCCTGGCAAAGACGGAAAATCGGCTGATGTTGTTCTTGGATTCGACTCTGTTGAGCCCTATTTGAAAGGGCTGGCTCCTTATTTTGGCTGCATTGTGGGCCGGGTCGCGAATAGGATCAAAGATGGCAAGTTTACACTCAATGGAACTGACTACTCTGTGTCTCTCAACAGGCCTCCAAATAGTCTCCATGGTGGTAACAAGGGTTATGATAAGCAGATATGGCAGGTAGCTGAATATAAGAAAGGCGATAACCCGTCCATCACTTTCAAATATCATAGTTATGATGGGGAGGAAGGTTACCCGGGGAGTGTTTCTGTGACTGCAACTTATACACTTACTTCAAGCACTACTATGCGACTCGACATGGAAGCAGAGCCTGAGAACAAGCCTACCCCTATCAGCTTAGCTCAGCACACTTACTGGAACTTGGCTGGCCATAACTCAGGCGACGTACTTGACCACAGAGTTCAAATATGGGCTAACCACATTACCCCTGTGGATGAAAACACAGTTCCCACAGGTGAAATCATGCCAGTTAAAGGCACCCCCTTTGATTTCACTGCTGAGAGGAGGGTTGGTGAGTCCATCCATGAGGTTGGACTAGGGTACGATCACAACTATGTGCTTGATTGTGGGGAAGAGAAGGAAGGTTTGAAGCATGCTGCTAAAGTGAGAGACCCTTCCAGCTCAAGGGTCCTTAACCTATGGAGCAATGCCCCTGGGATGCAGTTTTACACTGGGAATTATGTCGATTGTGTTCAAGGTAAAGGAGGTGCTGTTTATAATAAGCATGCAGGGCTCTGCTTGGAGACTCAGGGATTCCCAAATGCAATCAACACTCAAAACTTCCCATCTGTTGTTGTCCAACCTGGTGAGAAGTATAGAAACACCATGTTATTCGACTTTTCAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

337

Amino Acids

37.01

Weight (kDa)

5.6

Isoelectric Point (pI)

27.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	9 - 332	3.6e-94	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17940
fragaria_vesca	FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica	MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica	Prupe.5G234200_v2.0.a1
pyrus_communis	pycom06g20410 pycom14g19790
rosa_chinensis	RchiOBHm_Chr7g0178251
rosa_laevigata	RLG00000005459
rosa_multiflora	Rmu_co8199974.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275040
rosa_rugosa	Rorug06G0415500 Rorug06G0415600
rosa_samantha	Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana	Rw7G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	879
Acc36I	ACCTGC	1 cut(s)	310
AccB1I	GGYRCC	2 cut(s)	41, 638
AccII	CGCG	1 cut(s)	203
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	529
AfaI	GTAC	2 cut(s)	549, 704
AfiI	CCNNNNNNNGG	3 cut(s)	179, 635, 786
AgsI	TTSAA	7 cut(s)	29, 160, 364, 438, 566, 751, 857
AjnI	CCWGG	4 cut(s)	66, 97, 814, 964
AluBI	AGCT	4 cut(s)	326, 498, 503, 783
AluI	AGCT	4 cut(s)	326, 498, 503, 783
Alw26I	GTCTC	4 cut(s)	261, 284, 765, 899
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	3 cut(s)	193, 266, 529
ApeKI	GCWGC	3 cut(s)	72, 183, 758
AspS9I	GGNCC	2 cut(s)	193, 790
AsuC2I	CCSGG	3 cut(s)	197, 398, 399
AsuHPI	GGTGA	4 cut(s)	73, 629, 686, 980
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	531
BanI	GGYRCC	2 cut(s)	41, 638
BanII	GRGCYC	2 cut(s)	153, 897
BbvI	GCAGC	3 cut(s)	59, 170, 745
BccI	CCATC	6 cut(s)	86, 212, 362, 374, 689, 955
BciT130I	CCWGG	4 cut(s)	68, 99, 816, 966
BcnI	CCSGG	3 cut(s)	197, 398, 399
BcoDI	GTCTC	4 cut(s)	261, 284, 765, 899
BfaI	CTAG	1 cut(s)	698
BfuAI	ACCTGC	1 cut(s)	310
BisI	GCNGC	3 cut(s)	73, 184, 759
BlpI	GCTNAGC	2 cut(s)	499, 504
BlsI	GCNGC	3 cut(s)	74, 185, 760
Bme1390I	CCNGG	7 cut(s)	68, 99, 197, 398, 399, 816, 966
Bme18I	GGWCC	1 cut(s)	790
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	193, 790
BmiI	GGNNCC	4 cut(s)	43, 171, 640, 791
BmrFI	CCNGG	7 cut(s)	68, 99, 197, 398, 399, 816, 966
BmrI	ACTGGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	810
BmuI	ACTGGG	1 cut(s)	843
Bpu1102I	GCTNAGC	2 cut(s)	499, 504
BpuEI	CTTGAG	1 cut(s)	769
BpuMI	CCSGG	3 cut(s)	197, 398, 399
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	6 cut(s)	67, 283, 397, 398, 814, 815
BsaXI	ACNNNNNCTCC	4 cut(s)	658, 688, 858, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 635, 786
Bse1I	ACTGG	3 cut(s)	521, 629, 838
Bse3DI	GCAATG	1 cut(s)	814
BseBI	CCWGG	4 cut(s)	68, 99, 816, 966
BseDI	CCNNGG	6 cut(s)	67, 283, 397, 398, 814, 815
BseGI	GGATG	3 cut(s)	601, 681, 825
BseLI	CCNNNNNNNGG	3 cut(s)	179, 635, 786
BseMI	GCAATG	1 cut(s)	814
BseMII	CTCAG	5 cut(s)	465, 518, 552, 651, 923
BseNI	ACTGG	3 cut(s)	521, 629, 838
BseRI	GAGGAG	1 cut(s)	679
BseXI	GCAGC	3 cut(s)	59, 170, 745
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	3 cut(s)	195, 268, 531
BshNI	GGYRCC	2 cut(s)	41, 638
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	196, 398
BslI	CCNNNNNNNGG	3 cut(s)	179, 635, 786
BsmAI	GTCTC	4 cut(s)	261, 284, 765, 899
BsnI	GGCC	3 cut(s)	195, 268, 531
Bso31I	GGTCTC	1 cut(s)	765
BsoBI	CYCGRG	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	153, 897
Bsp143I	GATC	3 cut(s)	7, 210, 706
Bsp1720I	GCTNAGC	2 cut(s)	499, 504
Bsp19I	CCATGG	1 cut(s)	283
Bsp68I	TCGCGA	1 cut(s)	203
BspANI	GGCC	3 cut(s)	195, 268, 531
BspCNI	CTCAG	5 cut(s)	466, 517, 551, 652, 922
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	4 cut(s)	43, 171, 640, 791
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	2 cut(s)	41, 638
BspTNI	GGTCTC	1 cut(s)	765
BsrDI	GCAATG	1 cut(s)	814
BsrI	ACTGG	3 cut(s)	521, 629, 838
BssECI	CCNNGG	6 cut(s)	67, 283, 397, 398, 814, 815
BssMI	GATC	3 cut(s)	7, 210, 706
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	4 cut(s)	68, 99, 816, 966
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	1 cut(s)	729
BstC8I	GCNNGC	4 cut(s)	168, 529, 756, 888
BstDEI	CTNAG	6 cut(s)	474, 499, 504, 538, 660, 909
BstDSI	CCRYGG	1 cut(s)	283
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	3 cut(s)	601, 681, 825
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	3 cut(s)	10, 213, 709
BstMAI	GTCTC	4 cut(s)	261, 284, 765, 899
BstMBI	GATC	3 cut(s)	7, 210, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 316, 892
BstNI	CCWGG	4 cut(s)	68, 99, 816, 966
BstNSI	RCATGY	2 cut(s)	758, 890
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	7 cut(s)	66, 97, 195, 396, 397, 814, 964
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	59, 170, 745
BstXI	CCANNNNNNTGG	1 cut(s)	692
BsuRI	GGCC	3 cut(s)	195, 268, 531
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	601, 681, 825
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	654, 831
BtuMI	TCGCGA	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	4 cut(s)	168, 529, 756, 888
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr13I	GGNCC	2 cut(s)	193, 790
Cfr9I	CCCGGG	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	964
Csp6I	GTAC	2 cut(s)	548, 703
CviAII	CATG	8 cut(s)	46, 284, 460, 625, 686, 755, 887, 988
CviQI	GTAC	2 cut(s)	548, 703
DdeI	CTNAG	6 cut(s)	474, 499, 504, 538, 660, 909
DpnI	GATC	3 cut(s)	9, 212, 708
DpnII	GATC	3 cut(s)	7, 210, 706
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	283
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	153, 897
Eco31I	GGTCTC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	790
Eco88I	CYCGRG	1 cut(s)	397
Eco91I	GGTNACC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	790
EcoO65I	GGTNACC	1 cut(s)	392
EcoRII	CCWGG	4 cut(s)	66, 97, 814, 964
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	2 cut(s)	153, 897
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	8 cut(s)	49, 287, 463, 628, 689, 758, 890, 991
FatI	CATG	8 cut(s)	45, 283, 459, 624, 685, 754, 886, 987
Fnu4HI	GCNGC	3 cut(s)	73, 184, 759
FokI	GGATG	3 cut(s)	608, 668, 832
FriOI	GRGCYC	2 cut(s)	153, 897
Fsp4HI	GCNGC	3 cut(s)	73, 184, 759
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	3 cut(s)	73, 184, 759
HaeIII	GGCC	3 cut(s)	195, 268, 531
HapII	CCGG	2 cut(s)	196, 398
Hin1II	CATG	8 cut(s)	49, 287, 463, 628, 689, 758, 890, 991
HinfI	GANTC	7 cut(s)	51, 135, 140, 453, 677, 907, 915
HpaII	CCGG	2 cut(s)	196, 398
HphI	GGTGA	4 cut(s)	73, 629, 686, 980
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	4 cut(s)	383, 733, 737, 786
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	6 cut(s)	75, 186, 419, 823, 890, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 316, 892
HpyF3I	CTNAG	6 cut(s)	474, 499, 504, 538, 660, 909
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	8 cut(s)	49, 287, 463, 628, 689, 758, 890, 991
Kzo9I	GATC	3 cut(s)	7, 210, 706
LmnI	GCTCC	2 cut(s)	175, 804
Lsp1109I	GCAGC	3 cut(s)	59, 170, 745
LweI	GCATC	1 cut(s)	810
MabI	ACCWGGT	1 cut(s)	964
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	3 cut(s)	290, 392, 412
MalI	GATC	3 cut(s)	9, 212, 708
MboI	GATC	3 cut(s)	7, 210, 706
MboII	GAAGA	1 cut(s)	746
MhlI	GDGCHC	2 cut(s)	153, 897
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	1 cut(s)	838
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	5 cut(s)	60, 134, 447, 686, 901
MmeI	TCCRAC	3 cut(s)	87, 673, 985
MnlI	CCTC	8 cut(s)	65, 94, 279, 379, 657, 660, 682, 860
Mox20I	TGGCCA	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	2 cut(s)	633, 795
MslI	CAYNNNNRTG	3 cut(s)	375, 446, 714
Msp20I	TGGCCA	1 cut(s)	531
MspI	CCGG	2 cut(s)	196, 398
MspR9I	CCNGG	7 cut(s)	68, 99, 197, 398, 399, 816, 966
MvaI	CCWGG	4 cut(s)	68, 99, 816, 966
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	192, 316, 892
NciI	CCSGG	3 cut(s)	197, 398, 399
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	3 cut(s)	7, 210, 706
NlaIII	CATG	8 cut(s)	49, 287, 463, 628, 689, 758, 890, 991
NlaIV	GGNNCC	4 cut(s)	43, 171, 640, 791
NmuCI	GTSAC	1 cut(s)	412
NruI	TCGCGA	1 cut(s)	203
NspI	RCATGY	2 cut(s)	758, 890
PaeI	GCATGC	2 cut(s)	758, 890
PasI	CCCWGGG	1 cut(s)	815
PceI	AGGCCT	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	135, 915
PkrI	GCNGC	3 cut(s)	74, 185, 760
PleI	GAGTC	5 cut(s)	59, 134, 447, 685, 901
PpsI	GAGTC	5 cut(s)	59, 134, 447, 685, 901
PpuMI	RGGWCCY	1 cut(s)	790
PsiI	TTATAA	1 cut(s)	879
Psp5II	RGGWCCY	1 cut(s)	790
Psp6I	CCWGG	4 cut(s)	66, 97, 814, 964
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	4 cut(s)	66, 97, 814, 964
PspN4I	GGNNCC	4 cut(s)	43, 171, 640, 791
PspPI	GGNCC	2 cut(s)	193, 790
PspPPI	RGGWCCY	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	473
RruI	TCGCGA	1 cut(s)	203
RsaI	GTAC	2 cut(s)	549, 704
RsaNI	GTAC	2 cut(s)	548, 703
RseI	CAYNNNNRTG	3 cut(s)	375, 446, 714
SaqAI	TTAA	2 cut(s)	633, 795
SatI	GCNGC	3 cut(s)	73, 184, 759
Sau3AI	GATC	3 cut(s)	7, 210, 706
Sau96I	GGNCC	2 cut(s)	193, 790
SchI	GAGTC	5 cut(s)	60, 134, 447, 686, 901
ScrFI	CCNGG	7 cut(s)	68, 99, 197, 398, 399, 816, 966
SduI	GDGCHC	2 cut(s)	153, 897
SexAI	ACCWGGT	1 cut(s)	964
SfaNI	GCATC	1 cut(s)	810
SinI	GGWCC	1 cut(s)	790
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	3 cut(s)	375, 446, 714
SmlI	CTYRAG	1 cut(s)	784
SmoI	CTYRAG	1 cut(s)	784
SphI	GCATGC	2 cut(s)	758, 890
Sse9I	AATT	1 cut(s)	838
SseBI	AGGCCT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	698
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	7 cut(s)	66, 97, 195, 396, 397, 814, 964
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	4 cut(s)	138, 456, 846, 996
TasI	AATT	1 cut(s)	838
TfiI	GAWTC	2 cut(s)	135, 915
Tru1I	TTAA	2 cut(s)	633, 795
Tru9I	TTAA	2 cut(s)	633, 795
TscAI	CASTG	2 cut(s)	661, 838
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	3 cut(s)	72, 183, 758
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	612
TspGWI	ACGGA	1 cut(s)	123
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	2 cut(s)	661, 838
VpaK11BI	GGWCC	1 cut(s)	790
XceI	RCATGY	2 cut(s)	758, 890
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.