Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0011418

Physical Location & Seq

Genomic Coordinates Forward (+)

948811 .. 950440

Gene Structure 1630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCAGATCAGAAAGCAGAAATCTTTGAACTCAACAATGGCACCATGCGAGTCCTCATCTCCAACTGGGCTGCACCATCACCTCCTTGTCTGTTCCTGGCAAAGACGTTTTTGATGAATGTTGCTGATGTTTTGGATTCGATTGTGGGAAAATCGGCTGATGTTGTCCTTGGATTCGACTCTGTTGAGCCCTATTTGAAAGGGCTGGCTCCTTATTTTGGCTGCATTGTGGGCCGGGTCGCCAATAGGATCAAAGATGGCAAGTTTACACTCAATGGAACTGACTACTCTGTGTCTCTCAACAGGCCTCCAAACAGTCTCCATGGTGGTAACAAGGGTTATGACAAGCAGATATGGCAGGTAGCCGAACATAAGAAAGACGATAAGCCGTCCATTACTTTCAAATATCATAGTCATGATGGGGAGGAAGGTTACCCGGGGAGTGTTTCTGTGACTGCAACTTATACACTTACTTCAAGCACTACTATGCAACTCGACATGGAAGCAGTGCCTGAGAACAAGCCTACCCCTATCAGCTTAGCTCAGCACACTTACTGGAACTTGGCTGGCCATAACTCAGGCGACATACTTGACCACAGAGTTCAAATATGGGCTAACCACATTACCCCTGTGGATGAAAACACTGTTCCCACAGGTGAAATCATGCCAGTTAAAGGCACCCCCTTTGATTTCACTGCCGAGAGGAGGGTTGGTGAGTCCATTCATGAGGTTGGACTAGGGTACGATCACAACTATGTGCTTGATTGTGGGGAAGAGAAGGAAGGTTTGAAACATGCTGCTAAAGTGAGAGACCCTTCCAGCTCAAGGGTCCTTAACCTATGGAGCAATGCCCCTGGGATGCAGTTTTACACTGGGAATTATGTCGATTGTGTTCAAGGTAAAGGAGGTGCTGTTTATAATAAGCATGCAGGGCTCTGCTTGGAGACTCAGGGATTCCCAAATGCAATCAACACTCCAAACTTCCCATCTGTTGTTGTCCAACCTGGTGAGAAGTATAGAAACACCATGTTGTTTGAGTTTTCAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

350

Amino Acids

38.5

Weight (kDa)

5.64

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	51 - 345	3.4e-86	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17940
fragaria_vesca	FvH4_5g17440 FvH4_5g17440 FvH4_5g17440
malus_domestica	MD06G1227800.v1.1 MD14G1236900.v1.1
prunus_persica	Prupe.5G234200_v2.0.a1
pyrus_communis	pycom06g20410 pycom14g19790
rosa_chinensis	RchiOBHm_Chr7g0178251
rosa_laevigata	RLG00000005459
rosa_multiflora	Rmu_co8199974.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275040
rosa_rugosa	Rorug06G0415500 Rorug06G0415600
rosa_samantha	Rh7AG014600 Rh7BG014000 Rh7CG013900 Rh7DG014200
rosa_wichuraiana	Rw7G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	918
Acc36I	ACCTGC	1 cut(s)	349
AccB1I	GGYRCC	2 cut(s)	41, 677
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	568
AfaI	GTAC	1 cut(s)	743
AfiI	CCNNNNNNNGG	4 cut(s)	218, 674, 705, 825
AgsI	TTSAA	7 cut(s)	29, 199, 403, 477, 605, 790, 896
AjnI	CCWGG	3 cut(s)	96, 853, 1003
AluBI	AGCT	3 cut(s)	537, 542, 822
AluI	AGCT	3 cut(s)	537, 542, 822
Alw26I	GTCTC	4 cut(s)	300, 323, 804, 938
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	3 cut(s)	232, 305, 568
ApeKI	GCWGC	3 cut(s)	71, 222, 797
AspS9I	GGNCC	2 cut(s)	232, 829
AsuC2I	CCSGG	3 cut(s)	236, 437, 438
AsuHPI	GGTGA	4 cut(s)	72, 668, 725, 1019
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	829
BalI	TGGCCA	1 cut(s)	570
BanI	GGYRCC	2 cut(s)	41, 677
BanII	GRGCYC	2 cut(s)	192, 936
BbvI	GCAGC	3 cut(s)	58, 209, 784
BccI	CCATC	4 cut(s)	85, 251, 413, 994
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	3 cut(s)	98, 855, 1005
BcnI	CCSGG	3 cut(s)	236, 437, 438
BcoDI	GTCTC	4 cut(s)	300, 323, 804, 938
BfaI	CTAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	72, 223, 798
BlpI	GCTNAGC	2 cut(s)	538, 543
BlsI	GCNGC	3 cut(s)	73, 224, 799
Bme1390I	CCNGG	6 cut(s)	98, 236, 437, 438, 855, 1005
Bme18I	GGWCC	1 cut(s)	829
BmeT110I	CYCGRG	1 cut(s)	436
BmgT120I	GGNCC	2 cut(s)	232, 829
BmiI	GGNNCC	4 cut(s)	43, 210, 679, 830
BmrFI	CCNGG	6 cut(s)	98, 236, 437, 438, 855, 1005
BmrI	ACTGGG	2 cut(s)	76, 882
BmsI	GCATC	1 cut(s)	849
BmuI	ACTGGG	2 cut(s)	76, 882
Bpu1102I	GCTNAGC	2 cut(s)	538, 543
BpuEI	CTTGAG	1 cut(s)	808
BpuMI	CCSGG	3 cut(s)	236, 437, 438
BsaI	GGTCTC	1 cut(s)	804
BsaJI	CCNNGG	6 cut(s)	169, 322, 436, 437, 853, 854
BsaXI	ACNNNNNCTCC	4 cut(s)	697, 727, 897, 927
Bsc4I	CCNNNNNNNGG	4 cut(s)	218, 674, 705, 825
Bse1I	ACTGG	4 cut(s)	71, 560, 668, 877
Bse3DI	GCAATG	1 cut(s)	853
BseBI	CCWGG	3 cut(s)	98, 855, 1005
BseDI	CCNNGG	6 cut(s)	169, 322, 436, 437, 853, 854
BseGI	GGATG	2 cut(s)	640, 864
BseLI	CCNNNNNNNGG	4 cut(s)	218, 674, 705, 825
BseMI	GCAATG	1 cut(s)	853
BseMII	CTCAG	4 cut(s)	504, 557, 591, 962
BseNI	ACTGG	4 cut(s)	71, 560, 668, 877
BseRI	GAGGAG	1 cut(s)	718
BseXI	GCAGC	3 cut(s)	58, 209, 784
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	234, 307, 570
BshNI	GGYRCC	2 cut(s)	41, 677
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	235, 437
BslI	CCNNNNNNNGG	4 cut(s)	218, 674, 705, 825
BsmAI	GTCTC	4 cut(s)	300, 323, 804, 938
BsnI	GGCC	3 cut(s)	234, 307, 570
Bso31I	GGTCTC	1 cut(s)	804
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	192, 936
Bsp143I	GATC	3 cut(s)	7, 249, 745
Bsp1720I	GCTNAGC	2 cut(s)	538, 543
Bsp19I	CCATGG	1 cut(s)	322
BspANI	GGCC	3 cut(s)	234, 307, 570
BspCNI	CTCAG	4 cut(s)	505, 556, 590, 961
BspHI	TCATGA	2 cut(s)	415, 724
BspLI	GGNNCC	4 cut(s)	43, 210, 679, 830
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	2 cut(s)	41, 677
BspTNI	GGTCTC	1 cut(s)	804
BsrDI	GCAATG	1 cut(s)	853
BsrI	ACTGG	4 cut(s)	71, 560, 668, 877
BssECI	CCNNGG	6 cut(s)	169, 322, 436, 437, 853, 854
BssMI	GATC	3 cut(s)	7, 249, 745
BssT1I	CCWWGG	2 cut(s)	169, 322
Bst2UI	CCWGG	3 cut(s)	98, 855, 1005
Bst4CI	ACNGT	2 cut(s)	317, 646
Bst6I	CTCTTC	1 cut(s)	768
BstC8I	GCNNGC	3 cut(s)	207, 568, 927
BstDEI	CTNAG	5 cut(s)	513, 538, 543, 577, 948
BstDSI	CCRYGG	1 cut(s)	322
BstEII	GGTNACC	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	640, 864
BstKTI	GATC	3 cut(s)	10, 252, 748
BstMAI	GTCTC	4 cut(s)	300, 323, 804, 938
BstMBI	GATC	3 cut(s)	7, 249, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 355, 931
BstNI	CCWGG	3 cut(s)	98, 855, 1005
BstNSI	RCATGY	2 cut(s)	797, 929
BstPI	GGTNACC	1 cut(s)	431
BstSCI	CCNGG	6 cut(s)	96, 234, 435, 436, 853, 1003
BstV1I	GCAGC	3 cut(s)	58, 209, 784
BsuRI	GGCC	3 cut(s)	234, 307, 570
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	640, 864
BtsI	GCAGTG	2 cut(s)	513, 693
BtsIMutI	CAGTG	4 cut(s)	513, 642, 693, 870
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	207, 568, 927
CaiI	CAGNNNCTG	1 cut(s)	512
CciI	TCATGA	2 cut(s)	415, 724
Cfr13I	GGNCC	2 cut(s)	232, 829
Cfr9I	CCCGGG	1 cut(s)	436
CsiI	ACCWGGT	1 cut(s)	1003
Csp6I	GTAC	1 cut(s)	742
CviAII	CATG	9 cut(s)	46, 323, 416, 499, 664, 725, 794, 926, 1027
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	5 cut(s)	513, 538, 543, 577, 948
DpnI	GATC	3 cut(s)	9, 251, 747
DpnII	GATC	3 cut(s)	7, 249, 745
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Eco130I	CCWWGG	2 cut(s)	169, 322
Eco147I	AGGCCT	1 cut(s)	307
Eco24I	GRGCYC	2 cut(s)	192, 936
Eco31I	GGTCTC	1 cut(s)	804
Eco47I	GGWCC	1 cut(s)	829
Eco88I	CYCGRG	1 cut(s)	436
Eco91I	GGTNACC	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	829
EcoO65I	GGTNACC	1 cut(s)	431
EcoRII	CCWGG	3 cut(s)	96, 853, 1003
EcoT14I	CCWWGG	2 cut(s)	169, 322
EcoT38I	GRGCYC	2 cut(s)	192, 936
ErhI	CCWWGG	2 cut(s)	169, 322
FaeI	CATG	9 cut(s)	49, 326, 419, 502, 667, 728, 797, 929, 1030
FatI	CATG	9 cut(s)	45, 322, 415, 498, 663, 724, 793, 925, 1026
Fnu4HI	GCNGC	3 cut(s)	72, 223, 798
FokI	GGATG	2 cut(s)	647, 871
FriOI	GRGCYC	2 cut(s)	192, 936
Fsp4HI	GCNGC	3 cut(s)	72, 223, 798
FspBI	CTAG	1 cut(s)	737
GluI	GCNGC	3 cut(s)	72, 223, 798
HaeIII	GGCC	3 cut(s)	234, 307, 570
HapII	CCGG	2 cut(s)	235, 437
Hin1II	CATG	9 cut(s)	49, 326, 419, 502, 667, 728, 797, 929, 1030
HinfI	GANTC	7 cut(s)	51, 137, 174, 179, 716, 946, 954
HpaII	CCGG	2 cut(s)	235, 437
HphI	GGTGA	4 cut(s)	72, 668, 725, 1019
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	416, 725
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	4 cut(s)	422, 772, 776, 825
HpyCH4III	ACNGT	2 cut(s)	317, 646
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	7 cut(s)	74, 225, 458, 490, 862, 929, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 355, 931
HpyF3I	CTNAG	5 cut(s)	513, 538, 543, 577, 948
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	9 cut(s)	49, 326, 419, 502, 667, 728, 797, 929, 1030
Kzo9I	GATC	3 cut(s)	7, 249, 745
LmnI	GCTCC	2 cut(s)	214, 843
Lsp1109I	GCAGC	3 cut(s)	58, 209, 784
LweI	GCATC	1 cut(s)	849
MabI	ACCWGGT	1 cut(s)	1003
MaeI	CTAG	1 cut(s)	737
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	3 cut(s)	329, 431, 451
MalI	GATC	3 cut(s)	9, 251, 747
MboI	GATC	3 cut(s)	7, 249, 745
MboII	GAAGA	1 cut(s)	785
MhlI	GDGCHC	2 cut(s)	192, 936
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	1 cut(s)	877
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	4 cut(s)	60, 173, 725, 940
MmeI	TCCRAC	3 cut(s)	87, 712, 1024
MnlI	CCTC	8 cut(s)	65, 93, 318, 418, 696, 699, 721, 899
Mox20I	TGGCCA	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	2 cut(s)	672, 834
MslI	CAYNNNNRTG	3 cut(s)	414, 485, 753
Msp20I	TGGCCA	1 cut(s)	570
MspI	CCGG	2 cut(s)	235, 437
MspR9I	CCNGG	6 cut(s)	98, 236, 437, 438, 855, 1005
MvaI	CCWGG	3 cut(s)	98, 855, 1005
MwoI	GCNNNNNNNGC	3 cut(s)	231, 355, 931
NciI	CCSGG	3 cut(s)	236, 437, 438
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	7, 249, 745
NlaIII	CATG	9 cut(s)	49, 326, 419, 502, 667, 728, 797, 929, 1030
NlaIV	GGNNCC	4 cut(s)	43, 210, 679, 830
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	2 cut(s)	797, 929
PaeI	GCATGC	1 cut(s)	929
PagI	TCATGA	2 cut(s)	415, 724
PasI	CCCWGGG	1 cut(s)	854
PceI	AGGCCT	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	137, 174, 954
PkrI	GCNGC	3 cut(s)	73, 224, 799
PleI	GAGTC	4 cut(s)	59, 173, 724, 940
PpsI	GAGTC	4 cut(s)	59, 173, 724, 940
PpuMI	RGGWCCY	1 cut(s)	829
PsiI	TTATAA	1 cut(s)	918
Psp5II	RGGWCCY	1 cut(s)	829
Psp6I	CCWGG	3 cut(s)	96, 853, 1003
PspEI	GGTNACC	1 cut(s)	431
PspGI	CCWGG	3 cut(s)	96, 853, 1003
PspN4I	GGNNCC	4 cut(s)	43, 210, 679, 830
PspPI	GGNCC	2 cut(s)	232, 829
PspPPI	RGGWCCY	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
RseI	CAYNNNNRTG	3 cut(s)	414, 485, 753
SaqAI	TTAA	2 cut(s)	672, 834
SatI	GCNGC	3 cut(s)	72, 223, 798
Sau3AI	GATC	3 cut(s)	7, 249, 745
Sau96I	GGNCC	2 cut(s)	232, 829
SchI	GAGTC	4 cut(s)	60, 173, 725, 940
ScrFI	CCNGG	6 cut(s)	98, 236, 437, 438, 855, 1005
SduI	GDGCHC	2 cut(s)	192, 936
SexAI	ACCWGGT	1 cut(s)	1003
SfaNI	GCATC	1 cut(s)	849
SinI	GGWCC	1 cut(s)	829
SmaI	CCCGGG	1 cut(s)	438
SmiMI	CAYNNNNRTG	3 cut(s)	414, 485, 753
SmlI	CTYRAG	1 cut(s)	823
SmoI	CTYRAG	1 cut(s)	823
SphI	GCATGC	1 cut(s)	929
Sse9I	AATT	1 cut(s)	877
SseBI	AGGCCT	1 cut(s)	307
SspMI	CTAG	1 cut(s)	737
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	6 cut(s)	96, 234, 435, 436, 853, 1003
StyI	CCWWGG	2 cut(s)	169, 322
TaaI	ACNGT	2 cut(s)	317, 646
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	4 cut(s)	140, 177, 495, 885
TasI	AATT	1 cut(s)	877
TfiI	GAWTC	3 cut(s)	137, 174, 954
Tru1I	TTAA	2 cut(s)	672, 834
Tru9I	TTAA	2 cut(s)	672, 834
TscAI	CASTG	4 cut(s)	513, 649, 700, 877
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	3 cut(s)	71, 222, 797
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	3 cut(s)	131, 651, 713
TspMI	CCCGGG	1 cut(s)	436
TspRI	CASTG	4 cut(s)	513, 649, 700, 877
VpaK11BI	GGWCC	1 cut(s)	829
XceI	RCATGY	2 cut(s)	797, 929
XmaI	CCCGGG	1 cut(s)	436
XspI	CTAG	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.