AT3G19650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011131
Physical Location & Seq
Forward (+)
6823316 .. 6825350
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19650.1

Sequence Viewer

Length: 909 bp
ATGTCGACGAGGCGAGAAAGCAGAGATTCAGACCCTAGACGTCACCGTTCTAGAATCGATCGCGAACCCAGCCCTAAGAGATCAAGAAGAGATGGCAAACCTGAAGCTGAACGAGTTCTGAGTAAGAAGGATTTGGATGTTAGAGATGGTACTGACACTGAGAAAAACTCACGTCAGTCTTTGAGAGATGCTCCATTGGAACTTGATGCTCATGGTTCGAGAAAAGACAGTGAGAAGAAGCACTCTGGACATCATGAGACCACCAAAGCAGCTCCCCATCTGTCACAAGTACCTCGTTCTAGACCATATTCTCAGCATGATGATCGTCGTAGTGATGGAAAAGTTGATAGAAGACCAACTTCTGTGAGAGGATCGTGGAGAAGTTCAAGAGATCAGAGTAACCGAAGAGCTGGAGATGATGAGAAGTCACAGCATCGTAAAGACGAAGACAAAAGCTCATGGCGACATGATAGGTTCCGTGAGAGTGATGACACCCAAGGAGCACTCTCTAGGAAACGACCAGCCTTCAGGGAGAAGAAGATTGCAGAGGAAACTGGGAACAACACAGACAGAACAAGAACTGAGGATGGAAAAGACACTAATCTAAACAATCGCAGACAGAACGAGAGGAACTGGAGGAGCAATACGCATTCAGAAAGACATGAGAGACCAGCAATGGGAAGAGACAGAGTGTGGAACAGAGATGATGAAAGAGGCGCGGGAAGCAGACAGAGTTATCAAGCTGATAGAGACAGATTCAACGGCAATGGGCGAAGTGGGTTTAGCGGAAGCTGGACAAGGAATGAGAAGAAATGGGACCATGACTTGTTCGATGAGGCGAACAAGAGTCCAGCTAAAGCCACCGAGGAAGAACAGATAGCTAAAGTTGAAGCTTTGTTGGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

302

Amino Acids

35.28

Weight (kDa)

10.03

Isoelectric Point (pI)

65.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 63, 719
AciI CCGC 2 cut(s) 719, 786
AclWI GGATC 1 cut(s) 379
AcuI CTGAAG 2 cut(s) 123, 511
AcyI GRCGYC 1 cut(s) 40
AfaI GTAC 2 cut(s) 151, 291
AfiI CCNNNNNNNGG 1 cut(s) 677
AgsI TTSAA 3 cut(s) 387, 760, 890
AjiI CACGTC 1 cut(s) 173
AluBI AGCT 9 cut(s) 107, 272, 410, 456, 743, 792, 854, 881, 893
AluI AGCT 9 cut(s) 107, 272, 410, 456, 743, 792, 854, 881, 893
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 4 cut(s) 251, 661, 678, 744
AlwI GGATC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 719
AspS9I GGNCC 1 cut(s) 817
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 817
BbsI GAAGAC 2 cut(s) 358, 453
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 281
BccI CCATC 5 cut(s) 86, 140, 285, 329, 581
BceAI ACGGC 1 cut(s) 778
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BcoDI GTCTC 4 cut(s) 251, 661, 678, 744
BfaI CTAG 4 cut(s) 36, 51, 300, 510
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 817
BmgBI CACGTC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 817
BmiI GGNNCC 2 cut(s) 476, 818
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 3 cut(s) 178, 196, 442
BmuI ACTGGG 1 cut(s) 564
BpiI GAAGAC 2 cut(s) 358, 453
BplI GAGNNNNNCTC 4 cut(s) 152, 184, 175, 207
BpmI CTGGAG 2 cut(s) 432, 655
Bsa29I ATCGAT 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 40
BsaI GGTCTC 2 cut(s) 251, 661
BsaJI CCNNGG 2 cut(s) 496, 864
Bsc4I CCNNNNNNNGG 1 cut(s) 677
Bse1I ACTGG 2 cut(s) 559, 638
Bse3DI GCAATG 2 cut(s) 681, 772
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 496, 864
BseGI GGATG 2 cut(s) 142, 592
BseLI CCNNNNNNNGG 1 cut(s) 677
BseMI GCAATG 2 cut(s) 681, 772
BseMII CTCAG 4 cut(s) 110, 150, 326, 573
BseNI ACTGG 2 cut(s) 559, 638
BseRI GAGGAG 1 cut(s) 652
BseXI GCAGC 1 cut(s) 281
BseYI CCCAGC 1 cut(s) 68
Bsh1236I CGCG 2 cut(s) 63, 719
Bsh1285I CGRYCG 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 505
BslFI GGGAC 1 cut(s) 830
BslI CCNNNNNNNGG 1 cut(s) 677
BsmAI GTCTC 4 cut(s) 251, 661, 678, 744
BsmFI GGGAC 1 cut(s) 830
BsmI GAATGC 1 cut(s) 649
Bso31I GGTCTC 2 cut(s) 251, 661
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 5 cut(s) 58, 80, 322, 371, 391
Bsp68I TCGCGA 1 cut(s) 63
BspACI CCGC 2 cut(s) 719, 786
BspCNI CTCAG 4 cut(s) 111, 151, 325, 574
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 2 cut(s) 63, 719
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 476, 818
BspPI GGATC 1 cut(s) 379
BspQI GCTCTTC 1 cut(s) 400
BspTNI GGTCTC 2 cut(s) 251, 661
BsrDI GCAATG 2 cut(s) 681, 772
BsrI ACTGG 2 cut(s) 559, 638
BssECI CCNNGG 2 cut(s) 496, 864
BssMI GATC 5 cut(s) 58, 80, 322, 371, 391
BssNI GRCGYC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 496
Bst4CI ACNGT 2 cut(s) 47, 230
Bst6I CTCTTC 3 cut(s) 82, 400, 676
BstACI GRCGYC 1 cut(s) 40
BstDEI CTNAG 5 cut(s) 75, 119, 159, 312, 582
BstF5I GGATG 2 cut(s) 142, 592
BstFNI CGCG 2 cut(s) 63, 719
BstHHI GCGC 1 cut(s) 719
BstKTI GATC 5 cut(s) 61, 83, 325, 374, 394
BstMAI GTCTC 4 cut(s) 251, 661, 678, 744
BstMBI GATC 5 cut(s) 58, 80, 322, 371, 391
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 69, 723, 899
BstUI CGCG 2 cut(s) 63, 719
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 2 cut(s) 358, 453
Bsu15I ATCGAT 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 57
BtrI CACGTC 1 cut(s) 173
BtsCI GGATG 2 cut(s) 142, 592
BtsIMutI CAGTG 2 cut(s) 156, 235
BtuMI TCGCGA 1 cut(s) 63
CciI TCATGA 1 cut(s) 253
CfoI GCGC 1 cut(s) 719
Cfr13I GGNCC 1 cut(s) 817
ClaI ATCGAT 1 cut(s) 57
Csp6I GTAC 2 cut(s) 150, 290
CviAII CATG 7 cut(s) 212, 254, 317, 459, 467, 662, 821
CviQI GTAC 2 cut(s) 150, 290
DdeI CTNAG 5 cut(s) 75, 119, 159, 312, 582
DpnI GATC 5 cut(s) 60, 82, 324, 373, 393
DpnII GATC 5 cut(s) 58, 80, 322, 371, 391
Eam1104I CTCTTC 3 cut(s) 82, 400, 676
EarI CTCTTC 3 cut(s) 82, 400, 676
Eco130I CCWWGG 1 cut(s) 496
Eco31I GGTCTC 2 cut(s) 251, 661
Eco47I GGWCC 1 cut(s) 817
Eco57I CTGAAG 2 cut(s) 123, 511
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 7 cut(s) 215, 257, 320, 462, 470, 665, 824
FaiI YATR 8 cut(s) 213, 255, 307, 318, 460, 468, 663, 822
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FaqI GGGAC 1 cut(s) 830
FatI CATG 7 cut(s) 211, 253, 316, 458, 466, 661, 820
FauI CCCGC 1 cut(s) 712
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 149, 599
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 4 cut(s) 36, 51, 300, 510
GlaI GCGC 1 cut(s) 718
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 72
GsuI CTGGAG 2 cut(s) 432, 655
HhaI GCGC 1 cut(s) 719
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 7 cut(s) 215, 257, 320, 462, 470, 665, 824
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 891
HinfI GANTC 4 cut(s) 26, 54, 756, 847
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 31, 120, 396, 655
Hpy188III TCNNGA 9 cut(s) 51, 62, 84, 219, 246, 254, 300, 387, 906
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 10, 330
HpyAV CCTTC 2 cut(s) 121, 535
HpyCH4III ACNGT 2 cut(s) 47, 230
HpyCH4IV ACGT 2 cut(s) 40, 172
HpyCH4V TGCA 1 cut(s) 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 723, 899
HpyF3I CTNAG 5 cut(s) 75, 119, 159, 312, 582
HpySE526I ACGT 2 cut(s) 40, 172
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 7 cut(s) 215, 257, 320, 462, 470, 665, 824
HspAI GCGC 1 cut(s) 717
Kzo9I GATC 5 cut(s) 58, 80, 322, 371, 391
LguI GCTCTTC 1 cut(s) 400
LmnI GCTCC 4 cut(s) 196, 277, 500, 639
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 3 cut(s) 178, 196, 442
MaeI CTAG 4 cut(s) 36, 51, 300, 510
MaeII ACGT 2 cut(s) 40, 172
MaeIII GTNAC 4 cut(s) 41, 282, 398, 426
MalI GATC 5 cut(s) 60, 82, 324, 373, 393
MboI GATC 5 cut(s) 58, 80, 322, 371, 391
MhlI GDGCHC 1 cut(s) 505
MlyI GAGTC 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 649
MvnI CGCG 2 cut(s) 63, 719
MwoI GCNNNNNNNGC 3 cut(s) 69, 723, 899
NdeII GATC 5 cut(s) 58, 80, 322, 371, 391
NlaIII CATG 7 cut(s) 215, 257, 320, 462, 470, 665, 824
NlaIV GGNNCC 2 cut(s) 476, 818
NmuCI GTSAC 3 cut(s) 41, 282, 426
NruI TCGCGA 1 cut(s) 63
PagI TCATGA 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 400
PctI GAATGC 1 cut(s) 649
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 3 cut(s) 26, 54, 756
PkrI GCNGC 1 cut(s) 271
Ple19I CGATCG 1 cut(s) 61
PleI GAGTC 1 cut(s) 855
PpsI GAGTC 1 cut(s) 855
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 476, 818
PspPI GGNCC 1 cut(s) 817
PvuI CGATCG 1 cut(s) 61
RruI TCGCGA 1 cut(s) 63
RsaI GTAC 2 cut(s) 151, 291
RsaNI GTAC 2 cut(s) 150, 290
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 400
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 5 cut(s) 58, 80, 322, 371, 391
Sau96I GGNCC 1 cut(s) 817
SchI GAGTC 1 cut(s) 856
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 3 cut(s) 178, 196, 442
SinI GGWCC 1 cut(s) 817
SsiI CCGC 2 cut(s) 719, 786
SspMI CTAG 4 cut(s) 36, 51, 300, 510
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 2 cut(s) 47, 230
TaiI ACGT 2 cut(s) 43, 175
TaqI TCGA 4 cut(s) 5, 57, 218, 831
TfiI GAWTC 3 cut(s) 26, 54, 756
TscAI CASTG 2 cut(s) 163, 235
TseFI GTSAC 3 cut(s) 41, 282, 426
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 3 cut(s) 41, 282, 426
TspDTI ATGAA 1 cut(s) 723
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 2 cut(s) 163, 235
VpaK11BI GGWCC 1 cut(s) 817
XbaI TCTAGA 2 cut(s) 50, 299
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 4 cut(s) 36, 51, 300, 510
ZraI GACGTC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.