Rorug05G0546400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
73533577 .. 73533771
195 bp
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UTR
Exon/CDS
Intron
Rorug05G0546400.1

Sequence Viewer

Length: 195 bp
ATGCGAACCTCAGATTACTTTATCATGGTATCAGAGCGGGTTACCCACGTGTGCATGCCTAACGGCCACACGTGCTCCACGTCACCCAAAGTTGTCCACGTGTATGGCTTGAAAATTCACCACACGTGCGGGGGCGTGTTGAGAATATATGTCATCCCACATGGAAAAAATGGGACATTGCCTATGAGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

7.11

Weight (kDa)

9.3

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011131)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 37
AciI CCGC 2 cut(s) 37, 129
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 1 cut(s) 114
AcvI CACGTG 4 cut(s) 49, 72, 100, 126
AflIII ACRYGT 4 cut(s) 48, 69, 99, 123
AgsI TTSAA 1 cut(s) 112
AjiI CACGTC 1 cut(s) 81
Alw21I GWGCWC 1 cut(s) 77
AoxI GGCC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 75, 110
BbrPI CACGTG 4 cut(s) 49, 72, 100, 126
Bbv12I GWGCWC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 81
BsaAI YACGTR 4 cut(s) 49, 72, 100, 126
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse3DI GCAATG 1 cut(s) 176
BseGI GGATG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 24
BshFI GGCC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 77
BspACI CCGC 2 cut(s) 37, 129
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 176
BstBAI YACGTR 4 cut(s) 49, 72, 100, 126
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 10
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 58
BstPI GGTNACC 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 66
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 56
CviAII CATG 3 cut(s) 25, 55, 161
CviJI RGCY 2 cut(s) 66, 108
CviKI_1 RGCY 2 cut(s) 66, 108
DdeI CTNAG 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 64
Eco72I CACGTG 4 cut(s) 49, 72, 100, 126
Eco91I GGTNACC 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 40
FaeI CATG 3 cut(s) 28, 58, 164
FaiI YATR 8 cut(s) 26, 56, 105, 148, 150, 162, 185, 193
FaqI GGGAC 1 cut(s) 187
FatI CATG 3 cut(s) 24, 54, 160
FauI CCCGC 2 cut(s) 30, 122
FokI GGATG 1 cut(s) 140
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 3 cut(s) 28, 58, 164
HphI GGTGA 2 cut(s) 75, 110
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 13, 34
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4IV ACGT 5 cut(s) 48, 71, 80, 99, 125
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 10
HpySE526I ACGT 5 cut(s) 48, 71, 80, 99, 125
Hsp92II CATG 3 cut(s) 28, 58, 164
LmnI GCTCC 1 cut(s) 80
MaeII ACGT 5 cut(s) 48, 71, 80, 99, 125
MaeIII GTNAC 2 cut(s) 40, 81
MbiI CCGCTC 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 1 cut(s) 114
MnlI CCTC 1 cut(s) 19
MslI CAYNNNNRTG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 72
NlaIII CATG 3 cut(s) 28, 58, 164
NmuCI GTSAC 1 cut(s) 81
NspI RCATGY 1 cut(s) 58
PaeI GCATGC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PmaCI CACGTG 4 cut(s) 49, 72, 100, 126
PmlI CACGTG 4 cut(s) 49, 72, 100, 126
Ppu21I YACGTR 4 cut(s) 49, 72, 100, 126
PsiI TTATAA 1 cut(s) 193
PspCI CACGTG 4 cut(s) 49, 72, 100, 126
PspEI GGTNACC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 77
SetI ASST 6 cut(s) 11, 51, 74, 83, 102, 128
SmiMI CAYNNNNRTG 1 cut(s) 102
SphI GCATGC 1 cut(s) 58
Sse9I AATT 1 cut(s) 114
SsiI CCGC 2 cut(s) 37, 129
TaiI ACGT 5 cut(s) 51, 74, 83, 102, 128
TasI AATT 1 cut(s) 114
TseFI GTSAC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 81
XapI RAATTY 1 cut(s) 114
XceI RCATGY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.