Rh6BG055600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011131
Physical Location & Seq
Reverse (-)
8942547 .. 8945420
2874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG055600.1

Sequence Viewer

Length: 987 bp
ATGTCCCGACGAGACAGTCGCGATTCTGATTCCAGACGACACCGTTCCAGGTTCGACAGGGAACCCAGTCCCAAGAGGTATAGGAGGGATGAGCAGGACAACAAAGATAGAGTCTTCGAGAAGAGTAATTTGGAGGGTGCAAAGAAGACTGACCAGGATCAAAAGCGCCGCAGGCTGCAAGATGCATTGCCACTTGAGTCCCCATTAGGATCCGATGCCAAGGTGGAAAGTGGGGCTCCCAGGAAGGAGTCTGATACGAAACCCAGCGGACATCAAGAACTAACCAAAAACTCTTCTGATGCAACTGAAGCACCCCGGTCTCGATCTTATTTTCAGAAGCATGATGAGCGTGGTGGTGCCGGGCAAGCTGTTCGAAGCTCTGGTCGTGGTTCAACTTCTGAACATGGACGCCGGAGGGATTCAAAGGATCACCATGATGATAAGACAGTGAGCAAAACAACTAATGATTCACGGCTAAGAAATGAGAAACCTAATGGTGATGAAAACAGGACCTGGCGTCATGATCGTTACTCAGAAATGGAGGCTGATCTACCAGCTGCAAGGAAAAGACCCGCTTTCAGGGAGAAGAAAGTTCCACTGGAGTCTGAAAATACTGAAAAACCAGCAGTAGAGACTGCAAAGTCAAGCCATCCTGACTGTTCGATGGAAGGAAGTAGAAAGAAGGAGGAAAGAGGTGACAACCGACGCCACTTTGATAGATCTGAGAAGCAATTTGGAGGAGACAGGGTGCGTTACAAGGGAGAAGCGCAGAGAGGTGCCTTTCCTTCAAGAGAAAGGTACACCAATGGTGGTGCTGGCCGCAACTATAGAGGAAGAGATAGATTTGGTGAGAGGCAAGGGTATCATTCTACTGGTGGTCGTGTTGAGAAATGGGGACATGATTTATATCATGAGGCTAATAGGAGTCCAACACCAAAAAATGAAGAGGATCAAATTGCGAAGGTAGAAGCACTTTTGGCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

328

Amino Acids

37.76

Weight (kDa)

9.76

Isoelectric Point (pI)

63.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 15, 640
AccB1I GGYRCC 2 cut(s) 356, 776
AccII CGCG 1 cut(s) 21
AciI CCGC 4 cut(s) 169, 267, 573, 820
AclWI GGATC 5 cut(s) 165, 204, 217, 435, 957
AcoI YGGCCR 1 cut(s) 817
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 3 cut(s) 409, 517, 706
AfaI GTAC 1 cut(s) 800
AfiI CCNNNNNNNGG 1 cut(s) 579
AgsI TTSAA 3 cut(s) 393, 423, 789
AhdI GACNNNNNGTC 1 cut(s) 516
AjnI CCWGG 4 cut(s) 47, 153, 239, 512
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 3 cut(s) 368, 378, 557
AluI AGCT 3 cut(s) 368, 378, 557
Alw26I GTCTC 4 cut(s) 6, 324, 626, 735
AlwI GGATC 5 cut(s) 165, 204, 217, 435, 957
AlwNI CAGNNNCTG 1 cut(s) 513
AoxI GGCC 1 cut(s) 817
ApeKI GCWGC 2 cut(s) 175, 557
ArsI GACNNNNNNTTYG 4 cut(s) 96, 128, 367, 399
AspLEI GCGC 2 cut(s) 168, 769
AspS9I GGNCC 1 cut(s) 510
AsuC2I CCSGG 2 cut(s) 316, 361
AsuHPI GGTGA 4 cut(s) 422, 509, 707, 860
AsuII TTCGAA 1 cut(s) 373
AvaII GGWCC 1 cut(s) 510
BamHI GGATCC 1 cut(s) 209
BanI GGYRCC 2 cut(s) 356, 776
BanII GRGCYC 1 cut(s) 238
BbsI GAAGAC 2 cut(s) 106, 152
BbvI GCAGC 2 cut(s) 162, 544
BccI CCATC 2 cut(s) 657, 658
BceAI ACGGC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 4 cut(s) 49, 155, 241, 514
BcnI CCSGG 2 cut(s) 316, 361
BcoDI GTCTC 4 cut(s) 6, 324, 626, 735
BfmI CTRYAG 1 cut(s) 826
BfoI RGCGCY 1 cut(s) 169
BglII AGATCT 1 cut(s) 719
BisI GCNGC 4 cut(s) 169, 176, 558, 820
BlsI GCNGC 4 cut(s) 170, 177, 559, 821
Bme1390I CCNGG 6 cut(s) 49, 155, 241, 316, 361, 514
Bme18I GGWCC 1 cut(s) 510
BmeRI GACNNNNNGTC 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 5 cut(s) 63, 211, 237, 358, 778
BmrFI CCNGG 6 cut(s) 49, 155, 241, 316, 361, 514
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 3 cut(s) 172, 205, 289
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 106, 152
BpmI CTGGAG 1 cut(s) 620
Bpu14I TTCGAA 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 2 cut(s) 316, 361
BsaBI GATNNNNATC 1 cut(s) 906
BsaHI GRCGYC 3 cut(s) 409, 517, 706
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 3 cut(s) 219, 239, 314
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 1 cut(s) 579
Bse1I ACTGG 3 cut(s) 66, 603, 877
Bse3DI GCAATG 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 906
BseBI CCWGG 4 cut(s) 49, 155, 241, 514
BseDI CCNNGG 3 cut(s) 219, 239, 314
BseGI GGATG 2 cut(s) 94, 649
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 1 cut(s) 579
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 546, 714
BseNI ACTGG 3 cut(s) 66, 603, 877
BseRI GAGGAG 1 cut(s) 753
BseXI GCAGC 2 cut(s) 162, 544
BseYI CCCAGC 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 819
BshNI GGYRCC 2 cut(s) 356, 776
BsiSI CCGG 3 cut(s) 316, 360, 412
BslFI GGGAC 3 cut(s) 54, 184, 909
BslI CCNNNNNNNGG 1 cut(s) 579
BsmAI GTCTC 4 cut(s) 6, 324, 626, 735
BsmFI GGGAC 3 cut(s) 54, 184, 909
BsnI GGCC 1 cut(s) 819
Bso31I GGTCTC 1 cut(s) 324
Bsp119I TTCGAA 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 8 cut(s) 157, 209, 323, 427, 523, 547, 719, 949
Bsp68I TCGCGA 1 cut(s) 21
BspACI CCGC 4 cut(s) 169, 267, 573, 820
BspANI GGCC 1 cut(s) 819
BspCNI CTCAG 2 cut(s) 545, 715
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 2 cut(s) 520, 910
BspLI GGNNCC 5 cut(s) 63, 211, 237, 358, 778
BspPI GGATC 5 cut(s) 165, 204, 217, 435, 957
BspT104I TTCGAA 1 cut(s) 373
BspT107I GGYRCC 2 cut(s) 356, 776
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 3 cut(s) 66, 603, 877
BssECI CCNNGG 3 cut(s) 219, 239, 314
BssMI GATC 8 cut(s) 157, 209, 323, 427, 523, 547, 719, 949
BssNI GRCGYC 3 cut(s) 409, 517, 706
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 4 cut(s) 49, 155, 241, 514
Bst4CI ACNGT 4 cut(s) 17, 44, 448, 659
Bst6I CTCTTC 4 cut(s) 116, 298, 829, 939
BstACI GRCGYC 3 cut(s) 409, 517, 706
BstBI TTCGAA 1 cut(s) 373
BstC8I GCNNGC 3 cut(s) 173, 366, 817
BstDEI CTNAG 3 cut(s) 476, 532, 723
BstF5I GGATG 2 cut(s) 94, 649
BstFNI CGCG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 2 cut(s) 168, 769
BstKTI GATC 8 cut(s) 160, 212, 326, 430, 526, 550, 722, 952
BstMAI GTCTC 4 cut(s) 6, 324, 626, 735
BstMBI GATC 8 cut(s) 157, 209, 323, 427, 523, 547, 719, 949
BstMWI GCNNNNNNNGC 5 cut(s) 172, 308, 346, 365, 977
BstNI CCWGG 4 cut(s) 49, 155, 241, 514
BstSCI CCNGG 6 cut(s) 47, 153, 239, 314, 359, 512
BstSFI CTRYAG 1 cut(s) 826
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 162, 544
BstV2I GAAGAC 2 cut(s) 106, 152
BstX2I RGATCY 2 cut(s) 209, 719
BstYI RGATCY 2 cut(s) 209, 719
BsuRI GGCC 1 cut(s) 819
BtsCI GGATG 2 cut(s) 94, 649
BtsIMutI CAGTG 2 cut(s) 453, 596
BtuMI TCGCGA 1 cut(s) 21
Cac8I GCNNGC 3 cut(s) 173, 366, 817
CaiI CAGNNNCTG 1 cut(s) 513
CciI TCATGA 2 cut(s) 520, 910
CfoI GCGC 2 cut(s) 168, 769
Cfr13I GGNCC 1 cut(s) 510
CseI GACGC 3 cut(s) 417, 506, 714
Csp6I GTAC 1 cut(s) 799
CviAII CATG 6 cut(s) 341, 404, 434, 521, 899, 911
CviQI GTAC 1 cut(s) 799
DdeI CTNAG 3 cut(s) 476, 532, 723
DpnI GATC 8 cut(s) 159, 211, 325, 429, 525, 549, 721, 951
DpnII GATC 8 cut(s) 157, 209, 323, 427, 523, 547, 719, 949
DrdI GACNNNNNNGTC 2 cut(s) 15, 640
DriI GACNNNNNGTC 1 cut(s) 516
DseDI GACNNNNNNGTC 2 cut(s) 15, 640
EaeI YGGCCR 1 cut(s) 817
Eam1104I CTCTTC 4 cut(s) 116, 298, 829, 939
Eam1105I GACNNNNNGTC 1 cut(s) 516
EarI CTCTTC 4 cut(s) 116, 298, 829, 939
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 510
EcoRII CCWGG 4 cut(s) 47, 153, 239, 512
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 6 cut(s) 344, 407, 437, 524, 902, 914
FalI AAGNNNNNCTT 2 cut(s) 559, 591
FaqI GGGAC 3 cut(s) 54, 184, 909
FatI CATG 6 cut(s) 340, 403, 433, 520, 898, 910
FauI CCCGC 1 cut(s) 580
Fnu4HI GCNGC 4 cut(s) 169, 176, 558, 820
FokI GGATG 2 cut(s) 101, 636
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 4 cut(s) 169, 176, 558, 820
GlaI GCGC 2 cut(s) 167, 768
GluI GCNGC 4 cut(s) 169, 176, 558, 820
GsaI CCCAGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 620
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 1 cut(s) 819
HapII CCGG 3 cut(s) 316, 360, 412
HgaI GACGC 3 cut(s) 417, 506, 714
HhaI GCGC 2 cut(s) 168, 769
Hin1I GRCGYC 3 cut(s) 409, 517, 706
Hin1II CATG 6 cut(s) 344, 407, 437, 524, 902, 914
Hin6I GCGC 2 cut(s) 166, 767
HinP1I GCGC 2 cut(s) 166, 767
HinfI GANTC 9 cut(s) 23, 29, 111, 197, 248, 419, 467, 602, 925
HpaII CCGG 3 cut(s) 316, 360, 412
HphI GGTGA 4 cut(s) 422, 509, 707, 860
Hpy166II GTNNAC 1 cut(s) 801
Hpy188I TCNGA 9 cut(s) 28, 214, 253, 298, 336, 400, 535, 607, 724
Hpy8I GTNNAC 1 cut(s) 801
Hpy99I CGWCG 2 cut(s) 12, 708
HpyAV CCTTC 5 cut(s) 238, 662, 676, 795, 955
HpyCH4III ACNGT 4 cut(s) 17, 44, 448, 659
HpyCH4V TGCA 6 cut(s) 140, 178, 185, 302, 560, 638
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 308, 346, 365, 977
HpyF3I CTNAG 3 cut(s) 476, 532, 723
Hsp92I GRCGYC 3 cut(s) 409, 517, 706
Hsp92II CATG 6 cut(s) 344, 407, 437, 524, 902, 914
HspAI GCGC 2 cut(s) 166, 767
Kzo9I GATC 8 cut(s) 157, 209, 323, 427, 523, 547, 719, 949
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 2 cut(s) 162, 544
LweI GCATC 3 cut(s) 172, 205, 289
MaeIII GTNAC 3 cut(s) 527, 695, 752
MalI GATC 8 cut(s) 159, 211, 325, 429, 525, 549, 721, 951
MboI GATC 8 cut(s) 157, 209, 323, 427, 523, 547, 719, 949
MboII GAAGA 7 cut(s) 106, 133, 157, 285, 598, 846, 956
MflI RGATCY 2 cut(s) 209, 719
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 3 cut(s) 127, 731, 954
MlyI GAGTC 5 cut(s) 120, 206, 257, 611, 934
MmeI TCCRAC 1 cut(s) 953
Mph1103I ATGCAT 1 cut(s) 187
MslI CAYNNNNRTG 1 cut(s) 435
MspA1I CMGCKG 2 cut(s) 267, 557
MspI CCGG 3 cut(s) 316, 360, 412
MspR9I CCNGG 6 cut(s) 49, 155, 241, 316, 361, 514
MvaI CCWGG 4 cut(s) 49, 155, 241, 514
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 5 cut(s) 172, 308, 346, 365, 977
NciI CCSGG 2 cut(s) 316, 361
NdeII GATC 8 cut(s) 157, 209, 323, 427, 523, 547, 719, 949
NlaIII CATG 6 cut(s) 344, 407, 437, 524, 902, 914
NlaIV GGNNCC 5 cut(s) 63, 211, 237, 358, 778
NmuCI GTSAC 1 cut(s) 695
NruI TCGCGA 1 cut(s) 21
NsiI ATGCAT 1 cut(s) 187
NspV TTCGAA 1 cut(s) 373
PagI TCATGA 2 cut(s) 520, 910
PfeI GAWTC 4 cut(s) 23, 29, 419, 467
PkrI GCNGC 4 cut(s) 170, 177, 559, 821
PleI GAGTC 5 cut(s) 119, 205, 256, 610, 933
PpsI GAGTC 5 cut(s) 119, 205, 256, 610, 933
PpuMI RGGWCCY 1 cut(s) 510
Psp5II RGGWCCY 1 cut(s) 510
Psp6I CCWGG 4 cut(s) 47, 153, 239, 512
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 4 cut(s) 47, 153, 239, 512
PspN4I GGNNCC 5 cut(s) 63, 211, 237, 358, 778
PspPI GGNCC 1 cut(s) 510
PspPPI RGGWCCY 1 cut(s) 510
PstNI CAGNNNCTG 1 cut(s) 513
PsuI RGATCY 2 cut(s) 209, 719
PvuII CAGCTG 1 cut(s) 557
RruI TCGCGA 1 cut(s) 21
RsaI GTAC 1 cut(s) 800
RsaNI GTAC 1 cut(s) 799
RseI CAYNNNNRTG 1 cut(s) 435
SatI GCNGC 4 cut(s) 169, 176, 558, 820
Sau3AI GATC 8 cut(s) 157, 209, 323, 427, 523, 547, 719, 949
Sau96I GGNCC 1 cut(s) 510
SchI GAGTC 5 cut(s) 120, 206, 257, 611, 934
ScrFI CCNGG 6 cut(s) 49, 155, 241, 316, 361, 514
SduI GDGCHC 1 cut(s) 238
SfaNI GCATC 3 cut(s) 172, 205, 289
SfcI CTRYAG 1 cut(s) 826
SfuI TTCGAA 1 cut(s) 373
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 3 cut(s) 127, 731, 954
SsiI CCGC 4 cut(s) 169, 267, 573, 820
StyD4I CCNGG 6 cut(s) 47, 153, 239, 314, 359, 512
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 4 cut(s) 17, 44, 448, 659
TaqI TCGA 5 cut(s) 54, 117, 322, 373, 662
TasI AATT 3 cut(s) 127, 731, 954
TauI GCSGC 2 cut(s) 171, 822
TfiI GAWTC 4 cut(s) 23, 29, 419, 467
TscAI CASTG 2 cut(s) 453, 603
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 2 cut(s) 175, 557
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 3 cut(s) 516, 957, 972
TspRI CASTG 2 cut(s) 453, 603
VpaK11BI GGWCC 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.