Rh6DG053100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011131
Physical Location & Seq
Reverse (-)
5559228 .. 5562149
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG053100.1

Sequence Viewer

Length: 732 bp
ATGAAACCCAGTGGACATCAAGAGCTAACCAAAAACTCCTCTGATGCAACTGAAGCACCCCGGTCTCGATCTTATTTTCAGAAGCATGATGAGCGTGGTGGTGCCGGGCAAGCTGTTCGAAGCTCTGGTCGTGGTTCAACTTCTGAACATGGACGCCGGAGGGATTCAAAGGATCACCATGATGATAAGACAGTGAGCAAAACAACTAATGATTCACGGCTAAGAAATGAGAAACCTAATGGTGATGAAAGCAGGACCTGGCGTCATGATCGTTACTCAGAAATGGAGGCTGATCTACCAGCTGCAAGGAAAAGACCCGCTTTCAGGGAGAAGAAAGTTCCACTGGAGTCTGAAAATACTGAAAAAACAGCAGTAGAGACTGCAAAGTCAAGCCATCCTGACCGTTCGATGGAAGGAAGTAGAAAGAAGGAGGAAAGAGGTGACAACCGACGCCACTTTGATAGATCTGAGAAGCAATTTGGAGGAGACAGGGTGCGTTACAAGGGAGAAGCGCAGAGAGGTGCCTTTCCTTCAAGAGAAAGGTACACCAATGGTGGTGCTGGCCGCAACTATAGAGGAAGAGATAGATTTGGTGAGAGGCAAGGGTATCATTCTACTGGTGGTCGTGTTGAGAAATGGGGGCATGATTTATATCATGAGGCTAATAGGAGTCCAACACCAAAAAATGAAGAGGATCAAATTGCGAAGGTAGAAGCACTTTTGGCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

243

Amino Acids

27.78

Weight (kDa)

9.78

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 385
AccB1I GGYRCC 2 cut(s) 101, 521
AciI CCGC 2 cut(s) 318, 565
AclWI GGATC 2 cut(s) 180, 702
AcoI YGGCCR 1 cut(s) 562
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 3 cut(s) 154, 262, 451
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 2 cut(s) 324, 409
AgsI TTSAA 3 cut(s) 138, 168, 534
AhdI GACNNNNNGTC 1 cut(s) 261
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 4 cut(s) 25, 113, 123, 302
AluI AGCT 4 cut(s) 25, 113, 123, 302
Alw26I GTCTC 3 cut(s) 69, 371, 480
AlwI GGATC 2 cut(s) 180, 702
AlwNI CAGNNNCTG 1 cut(s) 258
AoxI GGCC 1 cut(s) 562
ApeKI GCWGC 1 cut(s) 302
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 2 cut(s) 61, 106
AsuHPI GGTGA 4 cut(s) 167, 254, 452, 605
AsuII TTCGAA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 255
BanI GGYRCC 2 cut(s) 101, 521
BbvI GCAGC 1 cut(s) 289
BccI CCATC 2 cut(s) 402, 403
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 259
BcnI CCSGG 2 cut(s) 61, 106
BcoDI GTCTC 3 cut(s) 69, 371, 480
BfmI CTRYAG 1 cut(s) 571
BglII AGATCT 1 cut(s) 464
BisI GCNGC 2 cut(s) 303, 565
BlsI GCNGC 2 cut(s) 304, 566
Bme1390I CCNGG 3 cut(s) 61, 106, 259
Bme18I GGWCC 1 cut(s) 255
BmeRI GACNNNNNGTC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 2 cut(s) 103, 523
BmrFI CCNGG 3 cut(s) 61, 106, 259
BmrI ACTGGG 1 cut(s) 3
BmsI GCATC 1 cut(s) 34
BmuI ACTGGG 1 cut(s) 3
BpmI CTGGAG 1 cut(s) 365
Bpu14I TTCGAA 1 cut(s) 118
BpuMI CCSGG 2 cut(s) 61, 106
BsaBI GATNNNNATC 1 cut(s) 651
BsaHI GRCGYC 3 cut(s) 154, 262, 451
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 409
Bse1I ACTGG 3 cut(s) 9, 348, 622
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 394
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 2 cut(s) 324, 409
BseMII CTCAG 2 cut(s) 291, 459
BseNI ACTGG 3 cut(s) 9, 348, 622
BseRI GAGGAG 2 cut(s) 28, 498
BseXI GCAGC 1 cut(s) 289
BshFI GGCC 1 cut(s) 564
BshNI GGYRCC 2 cut(s) 101, 521
BsiSI CCGG 3 cut(s) 61, 105, 157
BslI CCNNNNNNNGG 2 cut(s) 324, 409
BsmAI GTCTC 3 cut(s) 69, 371, 480
BsnI GGCC 1 cut(s) 564
Bso31I GGTCTC 1 cut(s) 69
Bsp119I TTCGAA 1 cut(s) 118
Bsp143I GATC 6 cut(s) 68, 172, 268, 292, 464, 694
BspACI CCGC 2 cut(s) 318, 565
BspANI GGCC 1 cut(s) 564
BspCNI CTCAG 2 cut(s) 290, 460
BspHI TCATGA 2 cut(s) 265, 655
BspLI GGNNCC 2 cut(s) 103, 523
BspPI GGATC 2 cut(s) 180, 702
BspT104I TTCGAA 1 cut(s) 118
BspT107I GGYRCC 2 cut(s) 101, 521
BspTNI GGTCTC 1 cut(s) 69
BsrI ACTGG 3 cut(s) 9, 348, 622
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 6 cut(s) 68, 172, 268, 292, 464, 694
BssNI GRCGYC 3 cut(s) 154, 262, 451
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 193, 404
Bst6I CTCTTC 2 cut(s) 574, 684
BstACI GRCGYC 3 cut(s) 154, 262, 451
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 111, 562
BstDEI CTNAG 3 cut(s) 221, 277, 468
BstF5I GGATG 1 cut(s) 394
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 6 cut(s) 71, 175, 271, 295, 467, 697
BstMAI GTCTC 3 cut(s) 69, 371, 480
BstMBI GATC 6 cut(s) 68, 172, 268, 292, 464, 694
BstMWI GCNNNNNNNGC 4 cut(s) 53, 91, 110, 722
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 3 cut(s) 59, 104, 257
BstSFI CTRYAG 1 cut(s) 571
BstV1I GCAGC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 1 cut(s) 564
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 3 cut(s) 16, 198, 341
Cac8I GCNNGC 2 cut(s) 111, 562
CaiI CAGNNNCTG 1 cut(s) 258
CciI TCATGA 2 cut(s) 265, 655
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 3 cut(s) 162, 251, 459
Csp6I GTAC 1 cut(s) 544
CviAII CATG 6 cut(s) 86, 149, 179, 266, 644, 656
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 3 cut(s) 221, 277, 468
DpnI GATC 6 cut(s) 70, 174, 270, 294, 466, 696
DpnII GATC 6 cut(s) 68, 172, 268, 292, 464, 694
DrdI GACNNNNNNGTC 1 cut(s) 385
DriI GACNNNNNGTC 1 cut(s) 261
DseDI GACNNNNNNGTC 1 cut(s) 385
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 2 cut(s) 574, 684
Eam1105I GACNNNNNGTC 1 cut(s) 261
EarI CTCTTC 2 cut(s) 574, 684
Eco31I GGTCTC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 257
FaeI CATG 6 cut(s) 89, 152, 182, 269, 647, 659
FaiI YATR 9 cut(s) 87, 150, 180, 267, 573, 645, 652, 657, 730
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FatI CATG 6 cut(s) 85, 148, 178, 265, 643, 655
FauI CCCGC 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 303, 565
FokI GGATG 1 cut(s) 381
Fsp4HI GCNGC 2 cut(s) 303, 565
GlaI GCGC 1 cut(s) 513
GluI GCNGC 2 cut(s) 303, 565
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 1 cut(s) 564
HapII CCGG 3 cut(s) 61, 105, 157
HgaI GACGC 3 cut(s) 162, 251, 459
HhaI GCGC 1 cut(s) 514
Hin1I GRCGYC 3 cut(s) 154, 262, 451
Hin1II CATG 6 cut(s) 89, 152, 182, 269, 647, 659
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HinfI GANTC 4 cut(s) 164, 212, 347, 670
HpaII CCGG 3 cut(s) 61, 105, 157
HphI GGTGA 4 cut(s) 167, 254, 452, 605
Hpy166II GTNNAC 2 cut(s) 14, 546
Hpy188I TCNGA 6 cut(s) 43, 81, 145, 280, 352, 469
Hpy188III TCNNGA 6 cut(s) 20, 66, 266, 398, 534, 656
Hpy8I GTNNAC 2 cut(s) 14, 546
Hpy99I CGWCG 1 cut(s) 453
HpyAV CCTTC 4 cut(s) 407, 421, 540, 700
HpyCH4III ACNGT 2 cut(s) 193, 404
HpyCH4V TGCA 3 cut(s) 47, 305, 383
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 91, 110, 722
HpyF3I CTNAG 3 cut(s) 221, 277, 468
Hsp92I GRCGYC 3 cut(s) 154, 262, 451
Hsp92II CATG 6 cut(s) 89, 152, 182, 269, 647, 659
HspAI GCGC 1 cut(s) 512
Kzo9I GATC 6 cut(s) 68, 172, 268, 292, 464, 694
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 34
MaeIII GTNAC 3 cut(s) 272, 440, 497
MalI GATC 6 cut(s) 70, 174, 270, 294, 466, 696
MboI GATC 6 cut(s) 68, 172, 268, 292, 464, 694
MboII GAAGA 3 cut(s) 343, 591, 701
MflI RGATCY 1 cut(s) 464
MluCI AATT 2 cut(s) 476, 699
MlyI GAGTC 2 cut(s) 356, 679
MmeI TCCRAC 1 cut(s) 698
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 3 cut(s) 61, 105, 157
MspR9I CCNGG 3 cut(s) 61, 106, 259
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 4 cut(s) 53, 91, 110, 722
NciI CCSGG 2 cut(s) 61, 106
NdeII GATC 6 cut(s) 68, 172, 268, 292, 464, 694
NlaIII CATG 6 cut(s) 89, 152, 182, 269, 647, 659
NlaIV GGNNCC 2 cut(s) 103, 523
NmuCI GTSAC 1 cut(s) 440
NspV TTCGAA 1 cut(s) 118
PagI TCATGA 2 cut(s) 265, 655
PfeI GAWTC 2 cut(s) 164, 212
PkrI GCNGC 2 cut(s) 304, 566
PleI GAGTC 2 cut(s) 355, 678
PpsI GAGTC 2 cut(s) 355, 678
PpuMI RGGWCCY 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 103, 523
PspPI GGNCC 1 cut(s) 255
PspPPI RGGWCCY 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 258
PsuI RGATCY 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 180
SatI GCNGC 2 cut(s) 303, 565
Sau3AI GATC 6 cut(s) 68, 172, 268, 292, 464, 694
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 2 cut(s) 356, 679
ScrFI CCNGG 3 cut(s) 61, 106, 259
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 571
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 2 cut(s) 476, 699
SsiI CCGC 2 cut(s) 318, 565
StyD4I CCNGG 3 cut(s) 59, 104, 257
TaaI ACNGT 2 cut(s) 193, 404
TaqI TCGA 3 cut(s) 67, 118, 407
TasI AATT 2 cut(s) 476, 699
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 2 cut(s) 164, 212
TscAI CASTG 3 cut(s) 16, 198, 348
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 4 cut(s) 17, 261, 702, 717
TspRI CASTG 3 cut(s) 16, 198, 348
VpaK11BI GGWCC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.