Rroxscaffold_7G00211640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011131
Physical Location & Seq
Forward (+)
62104099 .. 62106910
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211640.1

Sequence Viewer

Length: 996 bp
ATGTCCCGACGAGACAGTCGCGATTCTGGTTCCAGACGACACCGTTCCAGGTTCGACAGGGAACCCAGTCCCAAGAGGTATAGGAGGGATGAGCAAGACAACAAAGATAGAGTCTTCGAGAAGAGTACTTTGGAGGGTGCAAAGAAGACTGACCAGGAGGTCCAGGATCAAAAGCAGCGCCGCAGGCTGCAAGATGCATTGCCGCTCGAGTCCCCATTAGGATCCGATGCCAAGGTGGAAAGTGGGGCTCCCAGGAAGGAGTCTGATATGAAACCCAGCGGACATCAAGAACTAACCAAAAACTCTTCTGATGCAACTGAAGCACCCCGGTCTCGATCTTATTTTCAGCATGATGAGCGTGGTGGTGCTGGGCAAGCTGTTCGAAGCTCTGGTCGTGGTTCAACTTCTGAACATGGACGCCGGAGGGATTCAAAGGATCACCATGATGATAAGGCAGTGAGCAAAACAACTAATGATTCACGGCTAAGAAATGAGAAACCTAATGGTGATGAAAACAGGACCTGGCGTCATGATCGTTACTCAGAAATGGAGGCTGATCTACCAGCTGCAAGGAAAAGACCCGCTTTCAGGGAGAAGAAAGTTCCACTGGAGTCTGAAAATACTGAAAAAACAGCGGTAGAGACTGCAAAGTCAAGCCATCCTGACCGTTCGATGGAAGGAAGTAGAAAAAAGGAGGAAAGAGGTGACAACCGACGCCACTTTGATAGATCTGCTAAGCAATTTGGGGGAGACAGGGTGCGTTACAGGGGAGAGGCGCAGAGAGGTGCCTTTCCTTCGAGGGAAAGGTACACCAATGGTGGTGCTGGCCGCAACTATAGAGGAAGAGATAGATTTGGTGAGAAGCAAGGGTATCATTCTACTGGCGGTCGTGTTGAGAAATGGGAACATGATTTATATCACGAGGCTAACAGGAGTCCAACACCAAAAAATGAAGAGGATCAAATTGCCAAGGTCGAAACACTTTTGGCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Btz

Protein Analysis

331

Amino Acids

38.15

Weight (kDa)

9.83

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19650
fragaria_vesca FvH4_2g03741 FvH4_2g04340 FvH4_2g04340
malus_domestica MD05G1099900.v1.1
prunus_persica Prupe.8G144600_v2.0.a1 Prupe.8G144600_v2.0.a1
pyrus_communis pycom05g09870
rosa_chinensis RchiOBHm_Chr6g0253781
rosa_laevigata RLG00000014982 RLG00000014983
rosa_multiflora Rmu_co8218150.1_g000001 Rmu_sc0001351.1_g000015
rosa_roxburghii Rroxscaffold_7G00211640
rosa_rugosa Rorug05G0546400
rosa_samantha Rh6AG062100 Rh6BG055600 Rh6CG055500 Rh6DG053100
rosa_wichuraiana Rw6G005520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 15, 158, 649
AccB1I GGYRCC 1 cut(s) 785
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 21
AciI CCGC 7 cut(s) 181, 203, 279, 582, 635, 829, 885
AclWI GGATC 5 cut(s) 174, 216, 229, 444, 966
AcoI YGGCCR 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 3 cut(s) 418, 526, 715
AfaI GTAC 2 cut(s) 127, 809
AfiI CCNNNNNNNGG 2 cut(s) 588, 673
AgsI TTSAA 2 cut(s) 402, 432
AhdI GACNNNNNGTC 1 cut(s) 525
AjnI CCWGG 5 cut(s) 47, 153, 162, 251, 521
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 3 cut(s) 377, 387, 566
AluI AGCT 3 cut(s) 377, 387, 566
Alw26I GTCTC 4 cut(s) 6, 336, 635, 744
AlwI GGATC 5 cut(s) 174, 216, 229, 444, 966
AlwNI CAGNNNCTG 1 cut(s) 522
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 1 cut(s) 826
ApeKI GCWGC 3 cut(s) 175, 187, 566
ArsI GACNNNNNNTTYG 4 cut(s) 96, 128, 376, 408
AspLEI GCGC 2 cut(s) 180, 778
AspS9I GGNCC 2 cut(s) 160, 519
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 4 cut(s) 431, 518, 716, 869
AsuII TTCGAA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 2 cut(s) 160, 519
BamHI GGATCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 785
BanII GRGCYC 1 cut(s) 250
BauI CACGAG 1 cut(s) 920
BbsI GAAGAC 2 cut(s) 106, 152
BbvI GCAGC 3 cut(s) 174, 187, 553
BccI CCATC 2 cut(s) 666, 667
BceAI ACGGC 1 cut(s) 497
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BciT130I CCWGG 5 cut(s) 49, 155, 164, 253, 523
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 4 cut(s) 6, 336, 635, 744
BfmI CTRYAG 1 cut(s) 835
BfoI RGCGCY 1 cut(s) 181
BglII AGATCT 1 cut(s) 728
BisI GCNGC 6 cut(s) 176, 181, 188, 203, 567, 829
BlpI GCTNAGC 1 cut(s) 735
BlsI GCNGC 6 cut(s) 177, 182, 189, 204, 568, 830
BmcAI AGTACT 1 cut(s) 127
Bme1390I CCNGG 6 cut(s) 49, 155, 164, 253, 328, 523
Bme18I GGWCC 2 cut(s) 160, 519
BmeRI GACNNNNNGTC 1 cut(s) 525
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 160, 519
BmiI GGNNCC 5 cut(s) 31, 63, 223, 249, 787
BmrFI CCNGG 6 cut(s) 49, 155, 164, 253, 328, 523
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 3 cut(s) 184, 217, 301
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 106, 152
BpmI CTGGAG 1 cut(s) 629
Bpu1102I GCTNAGC 1 cut(s) 735
Bpu14I TTCGAA 1 cut(s) 382
BpuMI CCSGG 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 915
BsaHI GRCGYC 3 cut(s) 418, 526, 715
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 231, 251, 326, 969
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 2 cut(s) 588, 673
Bse1I ACTGG 3 cut(s) 66, 612, 886
Bse3DI GCAATG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 5 cut(s) 49, 155, 164, 253, 523
BseDI CCNNGG 4 cut(s) 231, 251, 326, 969
BseGI GGATG 2 cut(s) 94, 658
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 2 cut(s) 588, 673
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 3 cut(s) 66, 612, 886
BseXI GCAGC 3 cut(s) 174, 187, 553
BseYI CCCAGC 2 cut(s) 275, 368
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 889
BshFI GGCC 1 cut(s) 828
BshNI GGYRCC 1 cut(s) 785
BsiEI CGRYCG 1 cut(s) 889
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 2 cut(s) 328, 421
BslFI GGGAC 2 cut(s) 54, 196
BslI CCNNNNNNNGG 2 cut(s) 588, 673
BsmAI GTCTC 4 cut(s) 6, 336, 635, 744
BsmFI GGGAC 2 cut(s) 54, 196
BsnI GGCC 1 cut(s) 828
Bso31I GGTCTC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 8 cut(s) 166, 221, 335, 436, 532, 556, 728, 958
Bsp1720I GCTNAGC 1 cut(s) 735
Bsp68I TCGCGA 1 cut(s) 21
BspACI CCGC 7 cut(s) 181, 203, 279, 582, 635, 829, 885
BspANI GGCC 1 cut(s) 828
BspCNI CTCAG 1 cut(s) 554
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 5 cut(s) 31, 63, 223, 249, 787
BspPI GGATC 5 cut(s) 174, 216, 229, 444, 966
BspT104I TTCGAA 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 785
BspTNI GGTCTC 1 cut(s) 336
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 197
BsrI ACTGG 3 cut(s) 66, 612, 886
BssECI CCNNGG 4 cut(s) 231, 251, 326, 969
BssMI GATC 8 cut(s) 166, 221, 335, 436, 532, 556, 728, 958
BssNI GRCGYC 3 cut(s) 418, 526, 715
BssSI CACGAG 1 cut(s) 920
BssT1I CCWWGG 2 cut(s) 231, 969
Bst2BI CACGAG 1 cut(s) 920
Bst2UI CCWGG 5 cut(s) 49, 155, 164, 253, 523
Bst4CI ACNGT 3 cut(s) 17, 44, 668
Bst6I CTCTTC 4 cut(s) 116, 310, 838, 948
BstACI GRCGYC 3 cut(s) 418, 526, 715
BstBI TTCGAA 1 cut(s) 382
BstC8I GCNNGC 3 cut(s) 185, 375, 826
BstDEI CTNAG 3 cut(s) 485, 541, 735
BstF5I GGATG 2 cut(s) 94, 658
BstFNI CGCG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 2 cut(s) 180, 778
BstKTI GATC 8 cut(s) 169, 224, 338, 439, 535, 559, 731, 961
BstMAI GTCTC 4 cut(s) 6, 336, 635, 744
BstMBI GATC 8 cut(s) 166, 221, 335, 436, 532, 556, 728, 958
BstMCI CGRYCG 1 cut(s) 889
BstMWI GCNNNNNNNGC 4 cut(s) 184, 320, 355, 374
BstNI CCWGG 5 cut(s) 49, 155, 164, 253, 523
BstSCI CCNGG 6 cut(s) 47, 153, 162, 251, 326, 521
BstSFI CTRYAG 1 cut(s) 835
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 174, 187, 553
BstV2I GAAGAC 2 cut(s) 106, 152
BstX2I RGATCY 2 cut(s) 221, 728
BstYI RGATCY 2 cut(s) 221, 728
BsuRI GGCC 1 cut(s) 828
BtsCI GGATG 2 cut(s) 94, 658
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 2 cut(s) 462, 605
BtuMI TCGCGA 1 cut(s) 21
Cac8I GCNNGC 3 cut(s) 185, 375, 826
CaiI CAGNNNCTG 1 cut(s) 522
CciI TCATGA 1 cut(s) 529
CfoI GCGC 2 cut(s) 180, 778
Cfr13I GGNCC 2 cut(s) 160, 519
CseI GACGC 3 cut(s) 426, 515, 723
Csp6I GTAC 2 cut(s) 126, 808
CviAII CATG 5 cut(s) 350, 413, 443, 530, 908
CviQI GTAC 2 cut(s) 126, 808
DdeI CTNAG 3 cut(s) 485, 541, 735
DpnI GATC 8 cut(s) 168, 223, 337, 438, 534, 558, 730, 960
DpnII GATC 8 cut(s) 166, 221, 335, 436, 532, 556, 728, 958
DrdI GACNNNNNNGTC 3 cut(s) 15, 158, 649
DriI GACNNNNNGTC 1 cut(s) 525
DseDI GACNNNNNNGTC 3 cut(s) 15, 158, 649
EaeI YGGCCR 1 cut(s) 826
Eam1104I CTCTTC 4 cut(s) 116, 310, 838, 948
Eam1105I GACNNNNNGTC 1 cut(s) 525
EarI CTCTTC 4 cut(s) 116, 310, 838, 948
Eco130I CCWWGG 2 cut(s) 231, 969
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 160, 519
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 519
EcoRII CCWGG 5 cut(s) 47, 153, 162, 251, 521
EcoT14I CCWWGG 2 cut(s) 231, 969
EcoT22I ATGCAT 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 231, 969
FaeI CATG 5 cut(s) 353, 416, 446, 533, 911
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FaqI GGGAC 2 cut(s) 54, 196
FatI CATG 5 cut(s) 349, 412, 442, 529, 907
FauI CCCGC 1 cut(s) 589
Fnu4HI GCNGC 6 cut(s) 176, 181, 188, 203, 567, 829
FokI GGATG 2 cut(s) 101, 645
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 6 cut(s) 176, 181, 188, 203, 567, 829
GlaI GCGC 2 cut(s) 179, 777
GluI GCNGC 6 cut(s) 176, 181, 188, 203, 567, 829
GsaI CCCAGC 2 cut(s) 279, 372
GsuI CTGGAG 1 cut(s) 629
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 1 cut(s) 828
HapII CCGG 2 cut(s) 328, 421
HgaI GACGC 3 cut(s) 426, 515, 723
HhaI GCGC 2 cut(s) 180, 778
Hin1I GRCGYC 3 cut(s) 418, 526, 715
Hin1II CATG 5 cut(s) 353, 416, 446, 533, 911
Hin6I GCGC 2 cut(s) 178, 776
HinP1I GCGC 2 cut(s) 178, 776
HinfI GANTC 8 cut(s) 23, 111, 209, 260, 428, 476, 611, 934
HpaII CCGG 2 cut(s) 328, 421
HphI GGTGA 4 cut(s) 431, 518, 716, 869
Hpy166II GTNNAC 1 cut(s) 810
Hpy188I TCNGA 6 cut(s) 226, 265, 310, 409, 544, 616
Hpy188III TCNNGA 9 cut(s) 6, 20, 33, 118, 287, 333, 530, 662, 920
Hpy8I GTNNAC 1 cut(s) 810
Hpy99I CGWCG 2 cut(s) 12, 717
HpyAV CCTTC 3 cut(s) 250, 671, 804
HpyCH4III ACNGT 3 cut(s) 17, 44, 668
HpyCH4V TGCA 6 cut(s) 140, 190, 197, 314, 569, 647
HpyF10VI GCNNNNNNNGC 4 cut(s) 184, 320, 355, 374
HpyF3I CTNAG 3 cut(s) 485, 541, 735
Hsp92I GRCGYC 3 cut(s) 418, 526, 715
Hsp92II CATG 5 cut(s) 353, 416, 446, 533, 911
HspAI GCGC 2 cut(s) 178, 776
Kzo9I GATC 8 cut(s) 166, 221, 335, 436, 532, 556, 728, 958
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 3 cut(s) 174, 187, 553
LweI GCATC 3 cut(s) 184, 217, 301
MaeIII GTNAC 3 cut(s) 536, 704, 761
MalI GATC 8 cut(s) 168, 223, 337, 438, 534, 558, 730, 960
MbiI CCGCTC 1 cut(s) 205
MboI GATC 8 cut(s) 166, 221, 335, 436, 532, 556, 728, 958
MboII GAAGA 7 cut(s) 106, 133, 157, 297, 607, 855, 965
MflI RGATCY 2 cut(s) 221, 728
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 2 cut(s) 740, 963
MlyI GAGTC 5 cut(s) 120, 218, 269, 620, 943
MmeI TCCRAC 1 cut(s) 962
Mph1103I ATGCAT 1 cut(s) 199
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 3 cut(s) 279, 566, 635
MspI CCGG 2 cut(s) 328, 421
MspR9I CCNGG 6 cut(s) 49, 155, 164, 253, 328, 523
MvaI CCWGG 5 cut(s) 49, 155, 164, 253, 523
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 4 cut(s) 184, 320, 355, 374
NciI CCSGG 1 cut(s) 328
NdeII GATC 8 cut(s) 166, 221, 335, 436, 532, 556, 728, 958
NlaIII CATG 5 cut(s) 353, 416, 446, 533, 911
NlaIV GGNNCC 5 cut(s) 31, 63, 223, 249, 787
NmuCI GTSAC 1 cut(s) 704
NruI TCGCGA 1 cut(s) 21
NsiI ATGCAT 1 cut(s) 199
NspV TTCGAA 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 529
PfeI GAWTC 3 cut(s) 23, 428, 476
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 6 cut(s) 177, 182, 189, 204, 568, 830
PleI GAGTC 5 cut(s) 119, 217, 268, 619, 942
PpsI GAGTC 5 cut(s) 119, 217, 268, 619, 942
PpuMI RGGWCCY 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 519
Psp6I CCWGG 5 cut(s) 47, 153, 162, 251, 521
PspFI CCCAGC 2 cut(s) 275, 368
PspGI CCWGG 5 cut(s) 47, 153, 162, 251, 521
PspN4I GGNNCC 5 cut(s) 31, 63, 223, 249, 787
PspPI GGNCC 2 cut(s) 160, 519
PspPPI RGGWCCY 1 cut(s) 519
PspXI VCTCGAGB 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 522
PsuI RGATCY 2 cut(s) 221, 728
PvuII CAGCTG 1 cut(s) 566
RruI TCGCGA 1 cut(s) 21
RsaI GTAC 2 cut(s) 127, 809
RsaNI GTAC 2 cut(s) 126, 808
RseI CAYNNNNRTG 1 cut(s) 444
SatI GCNGC 6 cut(s) 176, 181, 188, 203, 567, 829
Sau3AI GATC 8 cut(s) 166, 221, 335, 436, 532, 556, 728, 958
Sau96I GGNCC 2 cut(s) 160, 519
ScaI AGTACT 1 cut(s) 127
SchI GAGTC 5 cut(s) 120, 218, 269, 620, 943
ScrFI CCNGG 6 cut(s) 49, 155, 164, 253, 328, 523
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 3 cut(s) 184, 217, 301
SfcI CTRYAG 1 cut(s) 835
Sfr274I CTCGAG 1 cut(s) 206
SfuI TTCGAA 1 cut(s) 382
SinI GGWCC 2 cut(s) 160, 519
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 740, 963
SsiI CCGC 7 cut(s) 181, 203, 279, 582, 635, 829, 885
StyD4I CCNGG 6 cut(s) 47, 153, 162, 251, 326, 521
StyI CCWWGG 2 cut(s) 231, 969
TaaI ACNGT 3 cut(s) 17, 44, 668
TaqI TCGA 8 cut(s) 54, 117, 207, 334, 382, 671, 797, 975
TasI AATT 2 cut(s) 740, 963
TatI WGTACW 1 cut(s) 125
TauI GCSGC 3 cut(s) 183, 205, 831
TfiI GAWTC 3 cut(s) 23, 428, 476
TscAI CASTG 2 cut(s) 462, 612
TseFI GTSAC 1 cut(s) 704
TseI GCWGC 3 cut(s) 175, 187, 566
Tsp45I GTSAC 1 cut(s) 704
TspDTI ATGAA 4 cut(s) 284, 525, 966, 981
TspRI CASTG 2 cut(s) 462, 612
VpaK11BI GGWCC 2 cut(s) 160, 519
XhoI CTCGAG 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 127
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.